data_DGE
# 
_chem_comp.id                                    DGE 
_chem_comp.name                                  "(2S,3R,4S)-4-{[1-(4,5-dihydro-1,3-thiazol-2-yl)azetidin-3-yl]sulfanyl}-2-[(2S,3R)-3-hydroxy-1-oxobutan-2-yl]-3-methyl-3,4-dihydro-2H-pyrrole-5-carboxylic acid" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C16 H23 N3 O4 S2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         "TEBIPENEM PRODUCT, BOUND FORM" 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2012-03-28 
_chem_comp.pdbx_modified_date                    2025-09-26 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        385.502 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     DGE 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        ? 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
DGE CAW CAW C 0 1 N N N N N N ? ? ? -4.688 0.207  0.245  CAW DGE 1  
DGE OAG OAG O 0 1 N N N N N N ? ? ? -5.646 0.718  -0.282 OAG DGE 2  
DGE CBF CBF C 0 1 N N S N N N ? ? ? -3.969 -0.928 -0.437 CBF DGE 3  
DGE CAZ CAZ C 0 1 N N R N N N ? ? ? -4.155 -2.212 0.374  CAZ DGE 4  
DGE CAC CAC C 0 1 N N N N N N ? ? ? -5.646 -2.540 0.474  CAC DGE 5  
DGE OAI OAI O 0 1 N N N N N N ? ? ? -3.473 -3.288 -0.273 OAI DGE 6  
DGE CBD CBD C 0 1 N N S N N N ? ? ? -2.477 -0.600 -0.537 CBD DGE 7  
DGE CBB CBB C 0 1 N N R N N N ? ? ? -2.251 0.583  -1.507 CBB DGE 8  
DGE CAD CAD C 0 1 N N N N N N ? ? ? -3.499 1.463  -1.604 CAD DGE 9  
DGE NAP NAP N 0 1 N N N N N N ? ? ? -1.970 -0.134 0.758  NAP DGE 10 
DGE CAY CAY C 0 1 N N N N N N ? ? ? -1.228 0.895  0.651  CAY DGE 11 
DGE CAV CAV C 0 1 N N N N N N ? ? ? -0.577 1.581  1.792  CAV DGE 12 
DGE OAH OAH O 0 1 N N N N N N ? ? ? -0.754 1.120  3.045  OAH DGE 13 
DGE OAF OAF O 0 1 N N N N N N ? ? ? 0.117  2.558  1.598  OAF DGE 14 
DGE CBE CBE C 0 1 N N S N N N ? ? ? -1.097 1.328  -0.793 CBE DGE 15 
DGE SAT SAT S 0 1 N N N N N N ? ? ? 0.506  0.815  -1.469 SAT DGE 16 
DGE CBA CBA C 0 1 N N N N N N ? ? ? 1.677  1.903  -0.612 CBA DGE 17 
DGE CAN CAN C 0 1 N N N N N N ? ? ? 3.130  1.757  -1.099 CAN DGE 18 
DGE CAM CAM C 0 1 N N N N N N ? ? ? 2.176  1.342  0.732  CAM DGE 19 
DGE NBG NBG N 0 1 N N N N N N ? ? ? 3.274  0.734  -0.045 NBG DGE 20 
DGE CAX CAX C 0 1 N N N N N N ? ? ? 4.100  -0.351 0.140  CAX DGE 21 
DGE SAS SAS S 0 1 N N N N N N ? ? ? 5.365  -0.865 -0.983 SAS DGE 22 
DGE CAK CAK C 0 1 N N N N N N ? ? ? 5.914  -2.293 0.007  CAK DGE 23 
DGE CAJ CAJ C 0 1 N N N N N N ? ? ? 4.990  -2.249 1.233  CAJ DGE 24 
DGE NAO NAO N 0 1 N N N N N N ? ? ? 4.070  -1.136 1.156  NAO DGE 25 
DGE H1  H1  H 0 1 N N N N N N ? ? ? -4.343 0.566  1.204  H1  DGE 26 
DGE H2  H2  H 0 1 N N N N N N ? ? ? -4.378 -1.068 -1.438 H2  DGE 27 
DGE H3  H3  H 0 1 N N N N N N ? ? ? -3.746 -2.072 1.375  H3  DGE 28 
DGE H4  H4  H 0 1 N N N N N N ? ? ? -6.056 -2.680 -0.526 H4  DGE 29 
DGE H5  H5  H 0 1 N N N N N N ? ? ? -5.779 -3.454 1.053  H5  DGE 30 
DGE H6  H6  H 0 1 N N N N N N ? ? ? -6.167 -1.719 0.968  H6  DGE 31 
DGE H7  H7  H 0 1 N N N N N N ? ? ? -3.786 -3.469 -1.169 H7  DGE 32 
DGE H8  H8  H 0 1 N N N N N N ? ? ? -1.918 -1.475 -0.870 H8  DGE 33 
DGE H9  H9  H 0 1 N N N N N N ? ? ? -1.944 0.231  -2.492 H9  DGE 34 
DGE H10 H10 H 0 1 N N N N N N ? ? ? -3.699 1.919  -0.635 H10 DGE 35 
DGE H11 H11 H 0 1 N N N N N N ? ? ? -3.336 2.244  -2.347 H11 DGE 36 
DGE H12 H12 H 0 1 N N N N N N ? ? ? -4.352 0.853  -1.901 H12 DGE 37 
DGE H16 H16 H 0 1 N N N N N N ? ? ? -0.310 1.600  3.757  H16 DGE 38 
DGE H17 H17 H 0 1 N N N N N N ? ? ? -1.224 2.407  -0.882 H17 DGE 39 
DGE H18 H18 H 0 1 N N N N N N ? ? ? 1.335  2.937  -0.557 H18 DGE 40 
DGE H19 H19 H 0 1 N N N N N N ? ? ? 3.217  1.360  -2.110 H19 DGE 41 
DGE H20 H20 H 0 1 N N N N N N ? ? ? 3.740  2.645  -0.937 H20 DGE 42 
DGE H21 H21 H 0 1 N N N N N N ? ? ? 2.506  2.108  1.433  H21 DGE 43 
DGE H22 H22 H 0 1 N N N N N N ? ? ? 1.501  0.614  1.182  H22 DGE 44 
DGE H25 H25 H 0 1 N N N N N N ? ? ? 5.771  -3.220 -0.550 H25 DGE 45 
DGE H26 H26 H 0 1 N N N N N N ? ? ? 6.956  -2.181 0.306  H26 DGE 46 
DGE H27 H27 H 0 1 N N N N N N ? ? ? 4.425  -3.180 1.289  H27 DGE 47 
DGE H28 H28 H 0 1 N N N N N N ? ? ? 5.595  -2.146 2.134  H28 DGE 48 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
DGE CAK CAJ SING N N 1  
DGE CAK SAS SING N N 2  
DGE CAJ NAO SING N N 3  
DGE NAO CAX DOUB N N 4  
DGE CAX SAS SING N N 5  
DGE CAX NBG SING N N 6  
DGE CAM NBG SING N N 7  
DGE CAM CBA SING N N 8  
DGE NBG CAN SING N N 9  
DGE OAI CAZ SING N N 10 
DGE CBA CAN SING N N 11 
DGE CBA SAT SING N N 12 
DGE CBD CBB SING N N 13 
DGE CBD NAP SING N N 14 
DGE CBD CBF SING N N 15 
DGE CBB CAD SING N N 16 
DGE CBB CBE SING N N 17 
DGE NAP CAY DOUB N N 18 
DGE CAC CAZ SING N N 19 
DGE CAZ CBF SING N N 20 
DGE SAT CBE SING N N 21 
DGE CAY CBE SING N N 22 
DGE CAY CAV SING N N 23 
DGE CBF CAW SING N N 24 
DGE OAF CAV DOUB N N 25 
DGE CAV OAH SING N N 26 
DGE CAW OAG DOUB N N 27 
DGE CAW H1  SING N N 28 
DGE CBF H2  SING N N 29 
DGE CAZ H3  SING N N 30 
DGE CAC H4  SING N N 31 
DGE CAC H5  SING N N 32 
DGE CAC H6  SING N N 33 
DGE OAI H7  SING N N 34 
DGE CBD H8  SING N N 35 
DGE CBB H9  SING N N 36 
DGE CAD H10 SING N N 37 
DGE CAD H11 SING N N 38 
DGE CAD H12 SING N N 39 
DGE OAH H16 SING N N 40 
DGE CBE H17 SING N N 41 
DGE CBA H18 SING N N 42 
DGE CAN H19 SING N N 43 
DGE CAN H20 SING N N 44 
DGE CAM H21 SING N N 45 
DGE CAM H22 SING N N 46 
DGE CAK H25 SING N N 47 
DGE CAK H26 SING N N 48 
DGE CAJ H27 SING N N 49 
DGE CAJ H28 SING N N 50 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
DGE SMILES           ACDLabs              12.01 "O=C(O)C3=NC(C(C=O)C(O)C)C(C)C3SC2CN(C1=NCCS1)C2"                                                                                                              
DGE InChI            InChI                1.03  "InChI=1S/C16H23N3O4S2/c1-8-12(11(7-20)9(2)21)18-13(15(22)23)14(8)25-10-5-19(6-10)16-17-3-4-24-16/h7-12,14,21H,3-6H2,1-2H3,(H,22,23)/t8-,9-,11-,12-,14+/m1/s1" 
DGE InChIKey         InChI                1.03  PNZUSXYFVQNLMP-ORMWDYAWSA-N                                                                                                                                    
DGE SMILES_CANONICAL CACTVS               3.370 "C[C@@H](O)[C@@H](C=O)[C@@H]1N=C([C@@H](SC2CN(C2)C3=NCCS3)[C@@H]1C)C(O)=O"                                                                                     
DGE SMILES           CACTVS               3.370 "C[CH](O)[CH](C=O)[CH]1N=C([CH](SC2CN(C2)C3=NCCS3)[CH]1C)C(O)=O"                                                                                               
DGE SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "C[C@H]1[C@@H](C(=N[C@H]1[C@H](C=O)[C@@H](C)O)C(=O)O)SC2CN(C2)C3=NCCS3"                                                                                        
DGE SMILES           "OpenEye OEToolkits" 1.7.6 "CC1C(C(=NC1C(C=O)C(C)O)C(=O)O)SC2CN(C2)C3=NCCS3"                                                                                                              
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
DGE "SYSTEMATIC NAME" ACDLabs              12.01 "(2S,3R,4S)-4-{[1-(4,5-dihydro-1,3-thiazol-2-yl)azetidin-3-yl]sulfanyl}-2-[(2S,3R)-3-hydroxy-1-oxobutan-2-yl]-3-methyl-3,4-dihydro-2H-pyrrole-5-carboxylic acid"           
DGE "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(2S,3R,4S)-4-[1-(4,5-dihydro-1,3-thiazol-2-yl)azetidin-3-yl]sulfanyl-3-methyl-2-[(2S,3R)-3-oxidanyl-1-oxidanylidene-butan-2-yl]-3,4-dihydro-2H-pyrrole-5-carboxylic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
DGE "Create component"   2012-03-28 RCSB 
DGE "Modify synonyms"    2012-03-29 RCSB 
DGE "Modify synonyms"    2012-03-30 RCSB 
DGE "Modify synonyms"    2021-03-13 RCSB 
DGE "Modify PCM"         2025-09-22 PDBJ 
DGE "Modify coordinates" 2025-09-23 RCSB 
DGE "Initial release"    2025-10-01 RCSB 
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      DGE 
_pdbx_chem_comp_synonyms.name         "TEBIPENEM PRODUCT, BOUND FORM" 
_pdbx_chem_comp_synonyms.provenance   PDB 
_pdbx_chem_comp_synonyms.type         ? 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            DGE 
_pdbx_chem_comp_pcm.modified_residue_id                SER 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               CAW 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   OG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
