data_VSE
# 
_chem_comp.id                                    VSE 
_chem_comp.name                                  "7-[trans-4-(4-methylpiperazin-1-yl)cyclohexyl]-5-(4-phenoxyphenyl)-7H-pyrrolo[2,3-d]pyrimidin-4-amine" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C29 H34 N6 O" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2012-05-28 
_chem_comp.pdbx_modified_date                    2013-04-26 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        482.620 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     VSE 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        3VS3 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
VSE NAK NAK N 0 1 N N N 0.762  2.250  13.038 3.235   2.816  -0.263 NAK LIG 1  
VSE C6  C6  C 0 1 Y N N -0.046 3.326  12.936 1.869   3.015  -0.175 C6  LIG 2  
VSE C5  C5  C 0 1 Y N N 0.460  4.620  13.045 0.989   1.927  -0.093 C5  LIG 3  
VSE CAI CAI C 0 1 Y N N 1.717  5.173  13.282 1.140   0.467  -0.073 CAI LIG 4  
VSE CAJ CAJ C 0 1 Y N N 3.074  4.574  13.440 2.411   -0.294 -0.143 CAJ LIG 5  
VSE CAL CAL C 0 1 Y N N 3.948  5.083  14.399 2.675   -1.299 0.787  CAL LIG 6  
VSE CAM CAM C 0 1 Y N N 5.233  4.561  14.523 3.857   -2.006 0.720  CAM LIG 7  
VSE CAN CAN C 0 1 Y N N 5.646  3.543  13.672 4.785   -1.716 -0.272 CAN LIG 8  
VSE OBD OBD O 0 1 N N N 6.906  3.012  13.758 5.950   -2.414 -0.336 OBD LIG 9  
VSE CBE CBE C 0 1 Y N N 7.457  2.604  14.942 7.105   -1.751 -0.066 CBE LIG 10 
VSE CBF CBF C 0 1 Y N N 8.719  3.067  15.296 7.065   -0.439 0.384  CBF LIG 11 
VSE CBG CBG C 0 1 Y N N 9.303  2.654  16.486 8.241   0.231  0.658  CBG LIG 12 
VSE CBH CBH C 0 1 Y N N 8.632  1.769  17.323 9.458   -0.403 0.483  CBH LIG 13 
VSE CBI CBI C 0 1 Y N N 7.374  1.299  16.963 9.500   -1.710 0.033  CBI LIG 14 
VSE CBJ CBJ C 0 1 Y N N 6.786  1.711  15.769 8.326   -2.388 -0.236 CBJ LIG 15 
VSE CAO CAO C 0 1 Y N N 4.784  3.064  12.693 4.525   -0.716 -1.200 CAO LIG 16 
VSE CAP CAP C 0 1 Y N N 3.501  3.586  12.569 3.341   -0.010 -1.141 CAP LIG 17 
VSE CAH CAH C 0 1 Y N N 1.546  6.538  13.280 -0.110  -0.049 0.022  CAH LIG 18 
VSE NAG NAG N 0 1 Y N N 0.263  6.835  13.080 -1.025  0.969  0.063  NAG LIG 19 
VSE C4  C4  C 0 1 Y N N -0.429 5.692  12.948 -0.391  2.180  -0.005 C4  LIG 20 
VSE N3  N3  N 0 1 Y N N -1.744 5.440  12.732 -0.807  3.446  -0.003 N3  LIG 21 
VSE C2  C2  C 0 1 Y N N -2.197 4.183  12.622 0.054   4.436  -0.082 C2  LIG 22 
VSE N1  N1  N 0 1 Y N N -1.369 3.135  12.724 1.359   4.243  -0.161 N1  LIG 23 
VSE CAQ CAQ C 0 1 N N N -0.203 8.250  13.067 -2.475  0.787  0.165  CAQ LIG 24 
VSE CAV CAV C 0 1 N N N -1.392 8.518  13.986 -2.806  0.034  1.455  CAV LIG 25 
VSE CAU CAU C 0 1 N N N -1.598 10.028 14.067 -4.320  -0.155 1.561  CAU LIG 26 
VSE CAT CAT C 0 1 N N N -1.875 10.586 12.671 -4.819  -0.960 0.359  CAT LIG 27 
VSE CAS CAS C 0 1 N N N -0.715 10.260 11.733 -4.488  -0.207 -0.932 CAS LIG 28 
VSE CAR CAR C 0 1 N N N -0.489 8.756  11.660 -2.974  -0.018 -1.037 CAR LIG 29 
VSE NAW NAW N 0 1 N N N -1.887 12.043 12.740 -6.273  -1.142 0.461  NAW LIG 30 
VSE CAX CAX C 0 1 N N N -2.887 12.702 11.915 -6.975  0.143  0.333  CAX LIG 31 
VSE CAY CAY C 0 1 N N N -2.527 14.179 11.952 -8.477  -0.079 0.523  CAY LIG 32 
VSE NAZ NAZ N 0 1 N N N -2.509 14.513 13.364 -8.959  -1.041 -0.478 NAZ LIG 33 
VSE CBC CBC C 0 1 N N N -3.456 15.505 13.850 -10.413 -1.223 -0.376 CBC LIG 34 
VSE CBA CBA C 0 1 N N N -1.553 13.899 14.281 -8.257  -2.325 -0.350 CBA LIG 35 
VSE CBB CBB C 0 1 N N N -0.904 12.694 13.599 -6.755  -2.104 -0.541 CBB LIG 36 
VSE H1  H1  H 0 1 N N N 0.221  1.415  12.934 3.595   1.915  -0.269 H1  LIG 37 
VSE H2  H2  H 0 1 N N N 1.459  2.287  12.321 3.833   3.577  -0.324 H2  LIG 38 
VSE H3  H3  H 0 1 N N N 3.628  5.885  15.048 1.954   -1.524 1.559  H3  LIG 39 
VSE H4  H4  H 0 1 N N N 5.905  4.945  15.276 4.062   -2.784 1.439  H4  LIG 40 
VSE H5  H5  H 0 1 N N N 9.246  3.749  14.645 6.116   0.057  0.521  H5  LIG 41 
VSE H6  H6  H 0 1 N N N 10.281 3.021  16.762 8.211   1.252  1.009  H6  LIG 42 
VSE H7  H7  H 0 1 N N N 9.086  1.448  18.249 10.376  0.123  0.697  H7  LIG 43 
VSE H8  H8  H 0 1 N N N 6.851  0.612  17.611 10.451  -2.203 -0.103 H8  LIG 44 
VSE H9  H9  H 0 1 N N N 5.812  1.338  15.487 8.360   -3.410 -0.583 H9  LIG 45 
VSE H10 H10 H 0 1 N N N 5.112  2.282  12.025 5.248   -0.494 -1.970 H10 LIG 46 
VSE H11 H11 H 0 1 N N N 2.840  3.222  11.796 3.139   0.767  -1.863 H11 LIG 47 
VSE H12 H12 H 0 1 N N N 2.335  7.262  13.420 -0.348  -1.102 0.060  H12 LIG 48 
VSE H13 H13 H 0 1 N N N -3.249 4.012  12.448 -0.319  5.450  -0.073 H13 LIG 49 
VSE H14 H14 H 0 1 N N N 0.628  8.860  13.452 -2.963  1.762  0.177  H14 LIG 50 
VSE H15 H15 H 0 1 N N N -2.294 8.040  13.577 -2.318  -0.940 1.442  H15 LIG 51 
VSE H16 H16 H 0 1 N N N -1.186 8.115  14.989 -2.451  0.608  2.311  H16 LIG 52 
VSE H17 H17 H 0 1 N N N -0.692 10.499 14.476 -4.556  -0.692 2.480  H17 LIG 53 
VSE H18 H18 H 0 1 N N N -2.453 10.246 14.724 -4.809  0.819  1.573  H18 LIG 54 
VSE H19 H19 H 0 1 N N N -2.821 10.189 12.274 -4.331  -1.935 0.346  H19 LIG 55 
VSE H20 H20 H 0 1 N N N 0.199  10.745 12.107 -4.844  -0.781 -1.788 H20 LIG 56 
VSE H21 H21 H 0 1 N N N -0.946 10.640 10.727 -4.976  0.767  -0.919 H21 LIG 57 
VSE H22 H22 H 0 1 N N N -1.388 8.263  11.262 -2.738  0.519  -1.957 H22 LIG 58 
VSE H23 H23 H 0 1 N N N 0.368  8.539  11.005 -2.486  -0.992 -1.050 H23 LIG 59 
VSE H25 H25 H 0 1 N N N -3.894 12.540 12.327 -6.610  0.834  1.092  H25 LIG 60 
VSE H26 H26 H 0 1 N N N -2.847 12.321 10.884 -6.792  0.560  -0.658 H26 LIG 61 
VSE H27 H27 H 0 1 N N N -1.539 14.350 11.499 -8.663  -0.471 1.523  H27 LIG 62 
VSE H28 H28 H 0 1 N N N -3.282 14.777 11.421 -9.003  0.868  0.400  H28 LIG 63 
VSE H30 H30 H 0 1 N N N -3.317 15.646 14.932 -10.911 -0.267 -0.542 H30 LIG 64 
VSE H31 H31 H 0 1 N N N -3.285 16.460 13.331 -10.743 -1.939 -1.128 H31 LIG 65 
VSE H32 H32 H 0 1 N N N -4.482 15.159 13.654 -10.664 -1.596 0.616  H32 LIG 66 
VSE H33 H33 H 0 1 N N N -0.778 14.632 14.549 -8.441  -2.743 0.640  H33 LIG 67 
VSE H34 H34 H 0 1 N N N -2.076 13.569 15.191 -8.622  -3.017 -1.110 H34 LIG 68 
VSE H35 H35 H 0 1 N N N -0.554 11.983 14.362 -6.569  -1.712 -1.541 H35 LIG 69 
VSE H36 H36 H 0 1 N N N -0.050 13.030 12.992 -6.229  -3.051 -0.417 H36 LIG 70 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
VSE CAR CAS SING N N 1  
VSE CAR CAQ SING N N 2  
VSE CAS CAT SING N N 3  
VSE CAX CAY SING N N 4  
VSE CAX NAW SING N N 5  
VSE CAY NAZ SING N N 6  
VSE CAP CAO DOUB Y N 7  
VSE CAP CAJ SING Y N 8  
VSE C2  N1  SING Y N 9  
VSE C2  N3  DOUB Y N 10 
VSE CAT NAW SING N N 11 
VSE CAT CAU SING N N 12 
VSE CAO CAN SING Y N 13 
VSE N1  C6  DOUB Y N 14 
VSE N3  C4  SING Y N 15 
VSE NAW CBB SING N N 16 
VSE C6  NAK SING N N 17 
VSE C6  C5  SING Y N 18 
VSE C4  C5  DOUB Y N 19 
VSE C4  NAG SING Y N 20 
VSE C5  CAI SING Y N 21 
VSE CAQ NAG SING N N 22 
VSE CAQ CAV SING N N 23 
VSE NAG CAH SING Y N 24 
VSE CAH CAI DOUB Y N 25 
VSE CAI CAJ SING N N 26 
VSE NAZ CBC SING N N 27 
VSE NAZ CBA SING N N 28 
VSE CAJ CAL DOUB Y N 29 
VSE CBB CBA SING N N 30 
VSE CAN OBD SING N N 31 
VSE CAN CAM DOUB Y N 32 
VSE OBD CBE SING N N 33 
VSE CAV CAU SING N N 34 
VSE CAL CAM SING Y N 35 
VSE CBE CBF DOUB Y N 36 
VSE CBE CBJ SING Y N 37 
VSE CBF CBG SING Y N 38 
VSE CBJ CBI DOUB Y N 39 
VSE CBG CBH DOUB Y N 40 
VSE CBI CBH SING Y N 41 
VSE NAK H1  SING N N 42 
VSE NAK H2  SING N N 43 
VSE CAL H3  SING N N 44 
VSE CAM H4  SING N N 45 
VSE CBF H5  SING N N 46 
VSE CBG H6  SING N N 47 
VSE CBH H7  SING N N 48 
VSE CBI H8  SING N N 49 
VSE CBJ H9  SING N N 50 
VSE CAO H10 SING N N 51 
VSE CAP H11 SING N N 52 
VSE CAH H12 SING N N 53 
VSE C2  H13 SING N N 54 
VSE CAQ H14 SING N N 55 
VSE CAV H15 SING N N 56 
VSE CAV H16 SING N N 57 
VSE CAU H17 SING N N 58 
VSE CAU H18 SING N N 59 
VSE CAT H19 SING N N 60 
VSE CAS H20 SING N N 61 
VSE CAS H21 SING N N 62 
VSE CAR H22 SING N N 63 
VSE CAR H23 SING N N 64 
VSE CAX H25 SING N N 65 
VSE CAX H26 SING N N 66 
VSE CAY H27 SING N N 67 
VSE CAY H28 SING N N 68 
VSE CBC H30 SING N N 69 
VSE CBC H31 SING N N 70 
VSE CBC H32 SING N N 71 
VSE CBA H33 SING N N 72 
VSE CBA H34 SING N N 73 
VSE CBB H35 SING N N 74 
VSE CBB H36 SING N N 75 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
VSE SMILES           ACDLabs              12.01 "O(c1ccccc1)c2ccc(cc2)c4c3c(ncnc3n(c4)C6CCC(N5CCN(CC5)C)CC6)N"                                                                                                                                             
VSE InChI            InChI                1.03  "InChI=1S/C29H34N6O/c1-33-15-17-34(18-16-33)22-9-11-23(12-10-22)35-19-26(27-28(30)31-20-32-29(27)35)21-7-13-25(14-8-21)36-24-5-3-2-4-6-24/h2-8,13-14,19-20,22-23H,9-12,15-18H2,1H3,(H2,30,31,32)/t22-,23-" 
VSE InChIKey         InChI                1.03  FDVSOQRNTAPCHB-YHBQERECSA-N                                                                                                                                                                                
VSE SMILES_CANONICAL CACTVS               3.370 "CN1CCN(CC1)[C@@H]2CC[C@H](CC2)n3cc(c4ccc(Oc5ccccc5)cc4)c6c(N)ncnc36"                                                                                                                                      
VSE SMILES           CACTVS               3.370 "CN1CCN(CC1)[CH]2CC[CH](CC2)n3cc(c4ccc(Oc5ccccc5)cc4)c6c(N)ncnc36"                                                                                                                                         
VSE SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CN1CCN(CC1)C2CCC(CC2)n3cc(c4c3ncnc4N)c5ccc(cc5)Oc6ccccc6"                                                                                                                                                 
VSE SMILES           "OpenEye OEToolkits" 1.7.6 "CN1CCN(CC1)C2CCC(CC2)n3cc(c4c3ncnc4N)c5ccc(cc5)Oc6ccccc6"                                                                                                                                                 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
VSE "SYSTEMATIC NAME" ACDLabs              12.01 "7-[trans-4-(4-methylpiperazin-1-yl)cyclohexyl]-5-(4-phenoxyphenyl)-7H-pyrrolo[2,3-d]pyrimidin-4-amine" 
VSE "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "7-[4-(4-methylpiperazin-1-yl)cyclohexyl]-5-(4-phenoxyphenyl)pyrrolo[2,3-d]pyrimidin-4-amine"           
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
VSE "Create component" 2012-05-28 PDBJ 
VSE "Initial release"  2013-05-01 RCSB 
# 
