data_YAE
# 
_chem_comp.id                                    YAE 
_chem_comp.name                                  "(E)-S-ethyl-N-({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methylidene)-L-homocysteine" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C14 H21 N2 O7 P S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-11-29 
_chem_comp.pdbx_modified_date                    2023-12-08 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        392.365 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     YAE 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8V4A 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
YAE C02  C1  C 0 1 N N N N N N 31.317 53.654 16.148 2.962  -1.353 -2.725 C02  YAE 1  
YAE C04  C2  C 0 1 N N N N N N 28.793 53.127 15.682 3.700  0.221  -0.956 C04  YAE 2  
YAE C05  C3  C 0 1 N N N N N N 28.875 52.952 14.171 3.234  1.322  -0.001 C05  YAE 3  
YAE C07  C4  C 0 1 N N N N N N 30.377 54.829 12.753 3.924  3.273  1.942  C07  YAE 4  
YAE C09  C5  C 0 1 Y N N N N N 29.004 54.452 21.869 -0.928 -2.972 2.034  C09  YAE 5  
YAE C10  C6  C 0 1 N N N N N N 29.981 55.244 22.689 -0.458 -4.131 2.873  C10  YAE 6  
YAE C11  C7  C 0 1 Y N N N N N 29.344 54.031 20.570 -0.052 -2.372 1.141  C11  YAE 7  
YAE C12  C8  C 0 1 Y N N N N N 28.331 53.295 19.894 -0.507 -1.293 0.366  C12  YAE 8  
YAE C13  C9  C 0 1 N N N N N N 28.622 52.837 18.522 0.385  -0.621 -0.598 C13  YAE 9  
YAE C14  C10 C 0 1 Y N N N N N 27.088 52.989 20.449 -1.832 -0.873 0.534  C14  YAE 10 
YAE C15  C11 C 0 1 N N N N N N 26.050 52.207 19.688 -2.377 0.279  -0.269 C15  YAE 11 
YAE C16  C12 C 0 1 Y N N N N N 26.855 53.461 21.737 -2.632 -1.530 1.447  C16  YAE 12 
YAE C23  C13 C 0 1 N N S N N N 30.057 52.844 16.518 2.492  -0.356 -1.697 C23  YAE 13 
YAE C25  C14 C 0 1 N N N N N N 30.477 53.824 11.625 5.021  3.956  2.763  C25  YAE 14 
YAE N01  N1  N 0 1 N N N N N N 29.670 53.238 17.895 1.606  -1.023 -0.739 N01  YAE 15 
YAE N17  N2  N 0 1 Y N N N N N 27.794 54.151 22.392 -2.169 -2.544 2.153  N17  YAE 16 
YAE O03  O1  O 0 1 N N N N N N 31.861 53.341 15.058 2.595  -2.502 -2.664 O03  YAE 17 
YAE O08  O2  O 0 1 N N N N N N 31.655 54.520 17.012 3.784  -0.962 -3.711 O08  YAE 18 
YAE O18  O3  O 0 1 N N N N N N 26.532 50.607 17.126 -3.962 2.968  -0.417 O18  YAE 19 
YAE O19  O4  O 0 1 N N N N N N 24.334 50.336 18.430 -6.076 1.713  0.152  O19  YAE 20 
YAE O20  O5  O 0 1 N N N N N N 30.479 54.293 20.030 1.223  -2.820 1.019  O20  YAE 21 
YAE O21  O6  O 0 1 N N N N N N 26.215 48.587 18.638 -4.846 1.353  -2.143 O21  YAE 22 
YAE O22  O7  O 0 1 N N N N N N 26.432 50.857 19.609 -3.742 0.505  0.087  O22  YAE 23 
YAE P24  P1  P 0 1 N N N N N N 25.821 50.016 18.324 -4.642 1.663  -0.577 P24  YAE 24 
YAE S06  S1  S 0 1 N N N N N N 28.751 54.657 13.552 4.666  2.007  0.876  S06  YAE 25 
YAE H041 H1  H 0 0 N N N N N N 28.502 54.170 15.874 4.402  0.640  -1.678 H041 YAE 26 
YAE H042 H2  H 0 0 N N N N N N 28.004 52.453 16.046 4.190  -0.569 -0.389 H042 YAE 27 
YAE H051 H3  H 0 0 N N N N N N 29.831 52.494 13.878 2.744  2.112  -0.569 H051 YAE 28 
YAE H052 H4  H 0 0 N N N N N N 28.044 52.335 13.799 2.532  0.904  0.720  H052 YAE 29 
YAE H071 H5  H 0 0 N N N N N N 30.485 55.847 12.351 3.205  2.806  2.615  H071 YAE 30 
YAE H072 H6  H 0 0 N N N N N N 31.172 54.639 13.489 3.417  4.015  1.326  H072 YAE 31 
YAE H102 H7  H 0 0 N N N N N N 29.534 55.479 23.666 -0.044 -3.758 3.810  H102 YAE 32 
YAE H101 H8  H 0 0 N N N N N N 30.898 54.654 22.837 -1.299 -4.791 3.086  H101 YAE 33 
YAE H103 H9  H 0 0 N N N N N N 30.227 56.179 22.164 0.310  -4.684 2.332  H103 YAE 34 
YAE H131 H10 H 0 0 N N N N N N 27.942 52.153 18.036 0.019  0.208  -1.186 H131 YAE 35 
YAE H152 H11 H 0 0 N N N N N N 25.083 52.283 20.207 -1.793 1.176  -0.061 H152 YAE 36 
YAE H151 H12 H 0 0 N N N N N N 25.955 52.619 18.673 -2.314 0.043  -1.332 H151 YAE 37 
YAE H161 H13 H 0 0 N N N N N N 25.905 53.268 22.213 -3.655 -1.212 1.582  H161 YAE 38 
YAE H231 H14 H 0 0 N N N N N N 30.288 51.769 16.480 1.950  0.449  -2.192 H231 YAE 39 
YAE H251 H15 H 0 0 N N N N N N 31.457 53.919 11.134 4.575  4.717  3.403  H251 YAE 40 
YAE H253 H16 H 0 0 N N N N N N 30.367 52.807 12.029 5.529  3.214  3.379  H253 YAE 41 
YAE H252 H17 H 0 0 N N N N N N 29.680 54.016 10.892 5.740  4.423  2.090  H252 YAE 42 
YAE H1   H18 H 0 1 N N N N N N 32.447 54.960 16.727 4.055  -1.636 -4.349 H1   YAE 43 
YAE H2   H19 H 0 1 N N N N N N 24.074 50.880 17.696 -6.672 2.389  -0.198 H2   YAE 44 
YAE H3   H20 H 0 1 N N N N N N 30.508 53.922 19.156 1.335  -3.512 0.353  H3   YAE 45 
YAE H4   H21 H 0 1 N N N N N N 26.864 48.292 18.010 -5.286 0.511  -2.323 H4   YAE 46 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
YAE N01 C13  DOUB N N 1  
YAE N01 C23  SING N N 2  
YAE C02 O03  DOUB N N 3  
YAE C02 O08  SING N N 4  
YAE C02 C23  SING N N 5  
YAE C04 C05  SING N N 6  
YAE C04 C23  SING N N 7  
YAE C05 S06  SING N N 8  
YAE S06 C07  SING N N 9  
YAE C07 C25  SING N N 10 
YAE C09 C10  SING N N 11 
YAE C11 C09  DOUB Y N 12 
YAE N17 C09  SING Y N 13 
YAE C12 C11  SING Y N 14 
YAE C11 O20  SING N N 15 
YAE C12 C13  SING N N 16 
YAE C14 C12  DOUB Y N 17 
YAE C14 C15  SING N N 18 
YAE C14 C16  SING Y N 19 
YAE C15 O22  SING N N 20 
YAE N17 C16  DOUB Y N 21 
YAE O18 P24  DOUB N N 22 
YAE O19 P24  SING N N 23 
YAE O21 P24  SING N N 24 
YAE O22 P24  SING N N 25 
YAE C04 H041 SING N N 26 
YAE C04 H042 SING N N 27 
YAE C05 H051 SING N N 28 
YAE C05 H052 SING N N 29 
YAE C07 H071 SING N N 30 
YAE C07 H072 SING N N 31 
YAE C10 H102 SING N N 32 
YAE C10 H101 SING N N 33 
YAE C10 H103 SING N N 34 
YAE C13 H131 SING N N 35 
YAE C15 H152 SING N N 36 
YAE C15 H151 SING N N 37 
YAE C16 H161 SING N N 38 
YAE C23 H231 SING N N 39 
YAE C25 H251 SING N N 40 
YAE C25 H253 SING N N 41 
YAE C25 H252 SING N N 42 
YAE O08 H1   SING N N 43 
YAE O19 H2   SING N N 44 
YAE O20 H3   SING N N 45 
YAE O21 H4   SING N N 46 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
YAE SMILES           ACDLabs              12.01 "Oc1c(/C=N/C(CCSCC)C(=O)O)c(cnc1C)COP(=O)(O)O"                                                                                                 
YAE InChI            InChI                1.06  "InChI=1S/C14H21N2O7PS/c1-3-25-5-4-12(14(18)19)16-7-11-10(8-23-24(20,21)22)6-15-9(2)13(11)17/h6-7,12,17H,3-5,8H2,1-2H3,(H,18,19)(H2,20,21,22)" 
YAE InChIKey         InChI                1.06  OMGMVELSRDRWBU-UHFFFAOYSA-N                                                                                                                    
YAE SMILES_CANONICAL CACTVS               3.385 "CCSCC[C@H](N=Cc1c(O)c(C)ncc1CO[P](O)(O)=O)C(O)=O"                                                                                             
YAE SMILES           CACTVS               3.385 "CCSCC[CH](N=Cc1c(O)c(C)ncc1CO[P](O)(O)=O)C(O)=O"                                                                                              
YAE SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCSCC[C@@H](C(=O)O)/N=C/c1c(cnc(c1O)C)COP(=O)(O)O"                                                                                            
YAE SMILES           "OpenEye OEToolkits" 2.0.7 "CCSCCC(C(=O)O)N=Cc1c(cnc(c1O)C)COP(=O)(O)O"                                                                                                   
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
YAE "SYSTEMATIC NAME" ACDLabs              12.01 "(E)-S-ethyl-N-({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methylidene)-L-homocysteine"                      
YAE "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{S})-4-ethylsulfanyl-2-[(~{E})-[2-methyl-3-oxidanyl-5-(phosphonooxymethyl)pyridin-4-yl]methylideneamino]butanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
YAE "Create component" 2023-11-29 RCSB 
YAE "Initial release"  2023-12-13 RCSB 
# 
