data_6TF
#

_chem_comp.id                                   6TF
_chem_comp.name                                 "N-[(4-fluorophenyl)methyl]-2-{(1R)-5-[(methylcarbamoyl)amino]-2',4'-dioxo-2,3-dihydro-3'H-spiro[indene-1,5'-[1,3]oxazolidin]-3'-yl}-N-[(2S)-1,1,1-trifluoropropan-2-yl]acetamide"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C25 H24 F4 N4 O5"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "N-(4-fluorobenzyl)-2-((R)-5-(3-methylureido)-2',4'-dioxo-2,3-dihydrospiro[indene-1,5'-ozazolidine]-3'-yl)-N-((S)-1,1,1-trifluoropropan-2-yl)acetamide"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2016-06-20
_chem_comp.pdbx_modified_date                   2021-03-13
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       536.475
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    6TF
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       5KJ2
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
6TF  C4   C1   C  0  1  Y  N  N  33.615   8.151  181.087   5.288   0.456  -0.575  C4   6TF   1  
6TF  C5   C2   C  0  1  Y  N  N  37.297  11.866  190.516  -6.284  -2.406  -1.200  C5   6TF   2  
6TF  C6   C3   C  0  1  Y  N  N  35.806  10.101  189.861  -4.600  -3.438   0.160  C6   6TF   3  
6TF  C7   C4   C  0  1  Y  N  N  35.408   6.773  180.307   5.198  -1.785   0.282  C7   6TF   4  
6TF  C8   C5   C  0  1  Y  N  N  35.817   8.527  181.873   3.395  -0.266   0.711  C8   6TF   5  
6TF  C10  C6   C  0  1  Y  N  N  35.890  12.135  188.607  -4.969  -1.076   0.295  C10  6TF   6  
6TF  C13  C7   C  0  1  N  N  N  36.709   9.485  184.073   0.918  -0.306   0.451  C13  6TF   7  
6TF  C15  C8   C  0  1  N  N  N  34.938  11.750  185.420  -2.217   0.612   0.670  C15  6TF   8  
6TF  C17  C9   C  0  1  N  N  N  37.750   7.305  181.229   3.045  -2.415   1.656  C17  6TF   9  
6TF  C20  C10  C  0  1  N  N  N  32.454  12.490  187.984  -4.430   0.762  -2.060  C20  6TF  10  
6TF  C21  C11  C  0  1  N  N  N  31.941   4.416  176.704  10.194   0.739  -1.868  C21  6TF  11  
6TF  C22  C12  C  0  1  N  N  N  35.436  13.014  187.496  -4.620   0.267   0.882  C22  6TF  12  
6TF  C24  C13  C  0  1  N  N  S  33.057  12.745  186.616  -3.640   1.593  -1.047  C24  6TF  13  
6TF  C1   C14  C  0  1  Y  N  N  34.483   8.876  181.879   4.058   0.716  -0.007  C1   6TF  14  
6TF  C2   C15  C  0  1  Y  N  N  36.868  12.619  189.445  -5.967  -1.176  -0.657  C2   6TF  15  
6TF  C3   C16  C  0  1  Y  N  N  35.367  10.871  188.809  -4.281  -2.205   0.697  C3   6TF  16  
6TF  C9   C17  C  0  1  Y  N  N  36.277   7.502  181.092   3.964  -1.521   0.850  C9   6TF  17  
6TF  C11  C18  C  0  1  Y  N  N  34.064   7.107  180.295   5.864  -0.800  -0.432  C11  6TF  18  
6TF  C12  C19  C  0  1  Y  N  N  36.754  10.616  190.710  -5.603  -3.540  -0.790  C12  6TF  19  
6TF  C14  C20  C  0  1  N  N  N  36.965  11.444  182.944   0.751   1.560   1.646  C14  6TF  20  
6TF  C16  C21  C  0  1  N  N  N  33.279   5.724  178.335   8.028  -0.088  -1.119  C16  6TF  21  
6TF  C18  C22  C  0  1  N  N  N  38.135   8.279  182.336   2.065  -1.446   2.369  C18  6TF  22  
6TF  C19  C23  C  0  1  N  N  R  36.933   9.178  182.616   2.068  -0.239   1.422  C19  6TF  23  
6TF  C23  C24  C  0  1  N  N  N  36.445  11.581  185.350  -1.020   1.178  -0.049  C23  6TF  24  
6TF  C25  C25  C  0  1  N  N  N  32.760  14.137  186.089  -4.409   2.877  -0.731  C25  6TF  25  
6TF  N26  N1   N  0  1  N  N  N  36.734  10.848  184.146   0.201   0.818   0.676  N26  6TF  26  
6TF  N27  N2   N  0  1  N  N  N  33.094   6.417  179.526   7.111  -1.070  -1.006  N27  6TF  27  
6TF  N28  N3   N  0  1  N  N  N  32.074   5.213  177.899   9.198  -0.328  -1.744  N28  6TF  28  
6TF  N29  N4   N  0  1  N  N  N  34.489  12.418  186.558  -3.456   0.818   0.183  N29  6TF  29  
6TF  O30  O1   O  0  1  N  N  N  36.550   8.680  184.982   0.686  -1.179  -0.357  O30  6TF  30  
6TF  O31  O2   O  0  1  N  N  N  37.021  12.634  182.660   0.293   2.616   2.032  O31  6TF  31  
6TF  O32  O3   O  0  1  N  N  N  34.199  11.341  184.529  -2.065  -0.030   1.688  O32  6TF  32  
6TF  O33  O4   O  0  1  N  N  N  34.346   5.542  177.755   7.799   1.013  -0.658  O33  6TF  33  
6TF  O34  O5   O  0  1  N  N  N  37.156  10.455  182.032   1.870   1.001   2.146  O34  6TF  34  
6TF  F35  F1   F  0  1  N  N  N  37.156   9.893  191.744  -5.917  -4.744  -1.316  F35  6TF  35  
6TF  F36  F2   F  0  1  N  N  N  31.425  14.279  185.933  -3.758   3.569   0.296  F36  6TF  36  
6TF  F37  F3   F  0  1  N  N  N  33.317  14.386  184.888  -4.463   3.682  -1.874  F37  6TF  37  
6TF  F38  F4   F  0  1  N  N  N  33.186  15.146  186.871  -5.708   2.555  -0.325  F38  6TF  38  
6TF  H1   H1   H  0  1  N  N  N  32.565   8.403  181.085   5.799   1.225  -1.135  H1   6TF  39  
6TF  H2   H2   H  0  1  N  N  N  38.047  12.250  191.192  -7.066  -2.484  -1.941  H2   6TF  40  
6TF  H3   H3   H  0  1  N  N  N  35.411   9.108  190.016  -4.068  -4.321   0.480  H3   6TF  41  
6TF  H4   H4   H  0  1  N  N  N  35.772   5.951  179.708   5.642  -2.763   0.392  H4   6TF  42  
6TF  H5   H5   H  0  1  N  N  N  37.984   6.269  181.517   2.497  -3.098   1.008  H5   6TF  43  
6TF  H6   H6   H  0  1  N  N  N  32.703  11.469  188.310  -4.567   1.339  -2.975  H6   6TF  44  
6TF  H7   H7   H  0  1  N  N  N  32.861  13.215  188.705  -3.882  -0.153  -2.286  H7   6TF  45  
6TF  H8   H8   H  0  1  N  N  N  31.361  12.601  187.929  -5.404   0.509  -1.642  H8   6TF  46  
6TF  H9   H9   H  0  1  N  N  N  30.888   4.129  176.570  11.067   0.361  -2.399  H9   6TF  47  
6TF  H10  H10  H  0  1  N  N  N  32.275   5.001  175.834   9.765   1.575  -2.422  H10  6TF  48  
6TF  H11  H11  H  0  1  N  N  N  32.559   3.511  176.797  10.490   1.077  -0.874  H11  6TF  49  
6TF  H12  H12  H  0  1  N  N  N  36.325  13.324  186.927  -5.466   0.945   0.768  H12  6TF  50  
6TF  H13  H13  H  0  1  N  N  N  34.958  13.900  187.940  -4.386   0.152   1.940  H13  6TF  51  
6TF  H14  H14  H  0  1  N  N  N  32.552  12.049  185.930  -2.666   1.846  -1.466  H14  6TF  52  
6TF  H15  H15  H  0  1  N  N  N  34.127   9.694  182.487   3.609   1.692  -0.123  H15  6TF  53  
6TF  H16  H16  H  0  1  N  N  N  37.301  13.592  189.263  -6.497  -0.291  -0.977  H16  6TF  54  
6TF  H17  H17  H  0  1  N  N  N  34.612  10.487  188.139  -3.502  -2.127   1.441  H17  6TF  55  
6TF  H18  H18  H  0  1  N  N  N  38.404   7.722  183.246   1.069  -1.885   2.440  H18  6TF  56  
6TF  H19  H19  H  0  1  N  N  N  36.803  11.022  186.227  -0.977   0.770  -1.059  H19  6TF  57  
6TF  H20  H20  H  0  1  N  N  N  36.934  12.566  185.318  -1.106   2.263  -0.099  H20  6TF  58  
6TF  H21  H21  H  0  1  N  N  N  32.161   6.430  179.885   7.316  -1.964  -1.322  H21  6TF  59  
6TF  H22  H22  H  0  1  N  N  N  31.253   5.404  178.437   9.380  -1.206  -2.113  H22  6TF  60  
6TF  H23  H23  H  0  1  N  N  N  38.269   7.550  180.291   3.624  -2.975   2.391  H23  6TF  61  
6TF  H24  H24  H  0  1  N  N  N  38.991   8.890  182.014   2.440  -1.171   3.355  H24  6TF  62  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
6TF  C21  N28  SING  N  N   1  
6TF  O33  C16  DOUB  N  N   2  
6TF  N28  C16  SING  N  N   3  
6TF  C16  N27  SING  N  N   4  
6TF  N27  C11  SING  N  N   5  
6TF  C11  C7   DOUB  Y  N   6  
6TF  C11  C4   SING  Y  N   7  
6TF  C7   C9   SING  Y  N   8  
6TF  C4   C1   DOUB  Y  N   9  
6TF  C9   C17  SING  N  N  10  
6TF  C9   C8   DOUB  Y  N  11  
6TF  C17  C18  SING  N  N  12  
6TF  C8   C1   SING  Y  N  13  
6TF  C8   C19  SING  N  N  14  
6TF  O34  C19  SING  N  N  15  
6TF  O34  C14  SING  N  N  16  
6TF  C18  C19  SING  N  N  17  
6TF  C19  C13  SING  N  N  18  
6TF  O31  C14  DOUB  N  N  19  
6TF  C14  N26  SING  N  N  20  
6TF  C13  N26  SING  N  N  21  
6TF  C13  O30  DOUB  N  N  22  
6TF  N26  C23  SING  N  N  23  
6TF  O32  C15  DOUB  N  N  24  
6TF  F37  C25  SING  N  N  25  
6TF  C23  C15  SING  N  N  26  
6TF  C15  N29  SING  N  N  27  
6TF  F36  C25  SING  N  N  28  
6TF  C25  C24  SING  N  N  29  
6TF  C25  F38  SING  N  N  30  
6TF  N29  C24  SING  N  N  31  
6TF  N29  C22  SING  N  N  32  
6TF  C24  C20  SING  N  N  33  
6TF  C22  C10  SING  N  N  34  
6TF  C10  C3   DOUB  Y  N  35  
6TF  C10  C2   SING  Y  N  36  
6TF  C3   C6   SING  Y  N  37  
6TF  C2   C5   DOUB  Y  N  38  
6TF  C6   C12  DOUB  Y  N  39  
6TF  C5   C12  SING  Y  N  40  
6TF  C12  F35  SING  N  N  41  
6TF  C4   H1   SING  N  N  42  
6TF  C5   H2   SING  N  N  43  
6TF  C6   H3   SING  N  N  44  
6TF  C7   H4   SING  N  N  45  
6TF  C17  H5   SING  N  N  46  
6TF  C20  H6   SING  N  N  47  
6TF  C20  H7   SING  N  N  48  
6TF  C20  H8   SING  N  N  49  
6TF  C21  H9   SING  N  N  50  
6TF  C21  H10  SING  N  N  51  
6TF  C21  H11  SING  N  N  52  
6TF  C22  H12  SING  N  N  53  
6TF  C22  H13  SING  N  N  54  
6TF  C24  H14  SING  N  N  55  
6TF  C1   H15  SING  N  N  56  
6TF  C2   H16  SING  N  N  57  
6TF  C3   H17  SING  N  N  58  
6TF  C18  H18  SING  N  N  59  
6TF  C23  H19  SING  N  N  60  
6TF  C23  H20  SING  N  N  61  
6TF  N27  H21  SING  N  N  62  
6TF  N28  H22  SING  N  N  63  
6TF  C17  H23  SING  N  N  64  
6TF  C18  H24  SING  N  N  65  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
6TF  SMILES            ACDLabs               12.01  "c3cc4C1(C(N(C(=O)O1)CC(N(Cc2ccc(cc2)F)C(C)C(F)(F)F)=O)=O)CCc4cc3NC(NC)=O"  
6TF  InChI             InChI                 1.03   "InChI=1S/C25H24F4N4O5/c1-14(25(27,28)29)32(12-15-3-5-17(26)6-4-15)20(34)13-33-21(35)24(38-23(33)37)10-9-16-11-18(7-8-19(16)24)31-22(36)30-2/h3-8,11,14H,9-10,12-13H2,1-2H3,(H2,30,31,36)/t14-,24+/m0/s1"  
6TF  InChIKey          InChI                 1.03   VRVJKILQRBSEAG-LFPIHBKWSA-N  
6TF  SMILES_CANONICAL  CACTVS                3.385  "CNC(=O)Nc1ccc2c(CC[C@@]23OC(=O)N(CC(=O)N(Cc4ccc(F)cc4)[C@@H](C)C(F)(F)F)C3=O)c1"  
6TF  SMILES            CACTVS                3.385  "CNC(=O)Nc1ccc2c(CC[C]23OC(=O)N(CC(=O)N(Cc4ccc(F)cc4)[CH](C)C(F)(F)F)C3=O)c1"  
6TF  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.6  "C[C@@H](C(F)(F)F)N(Cc1ccc(cc1)F)C(=O)CN2C(=O)[C@]3(CCc4c3ccc(c4)NC(=O)NC)OC2=O"  
6TF  SMILES            "OpenEye OEToolkits"  2.0.6  "CC(C(F)(F)F)N(Cc1ccc(cc1)F)C(=O)CN2C(=O)C3(CCc4c3ccc(c4)NC(=O)NC)OC2=O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
6TF  "SYSTEMATIC NAME"  ACDLabs               12.01  "N-[(4-fluorophenyl)methyl]-2-{(1R)-5-[(methylcarbamoyl)amino]-2',4'-dioxo-2,3-dihydro-3'H-spiro[indene-1,5'-[1,3]oxazolidin]-3'-yl}-N-[(2S)-1,1,1-trifluoropropan-2-yl]acetamide"  
6TF  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.6  "~{N}-[(4-fluorophenyl)methyl]-2-[(3~{R})-6-(methylcarbamoylamino)-2',4'-bis(oxidanylidene)spiro[1,2-dihydroindene-3,5'-1,3-oxazolidine]-3'-yl]-~{N}-[(2~{S})-1,1,1-tris(fluoranyl)propan-2-yl]ethanamide"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
6TF  "Create component"  2016-06-20  RCSB  
6TF  "Initial release"   2017-09-27  RCSB  
6TF  "Modify synonyms"   2017-10-19  RCSB  
6TF  "Modify synonyms"   2021-03-13  RCSB  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     6TF
_pdbx_chem_comp_synonyms.name        "N-(4-fluorobenzyl)-2-((R)-5-(3-methylureido)-2',4'-dioxo-2,3-dihydrospiro[indene-1,5'-ozazolidine]-3'-yl)-N-((S)-1,1,1-trifluoropropan-2-yl)acetamide"
_pdbx_chem_comp_synonyms.provenance  PDB
_pdbx_chem_comp_synonyms.type        ?
##
