data_A1AXF
# 
_chem_comp.id                                    A1AXF 
_chem_comp.name                                  "1-[5-chloro-4-(difluoromethyl)pyridin-2-yl]piperazine" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C10 H12 Cl F2 N3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2024-07-10 
_chem_comp.pdbx_modified_date                    2025-03-21 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        247.672 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     A1AXF 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7H9Y 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
A1AXF C10 C1  C  0 1 Y N N N N N 4.886 -14.567 -25.313 -1.800 0.942  -0.114 C10 A1AXF 1  
A1AXF C7  C2  C  0 1 N N N N N N 4.647 -8.871  -22.730 4.073  -1.342 -0.505 C7  A1AXF 2  
A1AXF C8  C3  C  0 1 N N N N N N 4.681 -9.750  -23.958 2.619  -0.933 -0.754 C8  A1AXF 3  
A1AXF C9  C4  C  0 1 Y N N N N N 3.883 -13.679 -24.985 -0.805 1.890  0.019  C9  A1AXF 4  
A1AXF C1  C5  C  0 1 N N N N N N 7.318 -15.174 -25.477 -2.525 -1.467 -0.224 C1  A1AXF 5  
A1AXF C2  C6  C  0 1 Y N N N N N 6.213 -14.215 -25.118 -1.464 -0.406 -0.087 C2  A1AXF 6  
A1AXF C3  C7  C  0 1 Y N N N N N 6.480 -12.958 -24.594 -0.134 -0.751 0.068  C3  A1AXF 7  
A1AXF C4  C8  C  0 1 Y N N N N N 5.417 -12.101 -24.288 0.817  0.256  0.191  C4  A1AXF 8  
A1AXF C5  C9  C  0 1 N N N N N N 6.825 -10.511 -23.006 2.991  1.128  0.458  C5  A1AXF 9  
A1AXF C6  C10 C  0 1 N N N N N N 7.089 -9.024  -23.085 4.445  0.719  0.708  C6  A1AXF 10 
A1AXF F1  F1  F  0 1 N N N N N N 7.830 -14.871 -26.698 -2.132 -2.613 0.476  F1  A1AXF 11 
A1AXF F2  F2  F  0 1 N N N N N N 8.354 -15.089 -24.604 -3.731 -0.992 0.301  F2  A1AXF 12 
A1AXF N1  N1  N  0 1 N N N N N N 5.626 -10.847 -23.770 2.158  -0.077 0.347  N1  A1AXF 13 
A1AXF N2  N2  N  0 1 N N N N N N 5.974 -8.249  -22.476 4.906  -0.137 -0.394 N2  A1AXF 14 
A1AXF N3  N3  N  0 1 Y N N N N N 4.139 -12.463 -24.483 0.457  1.530  0.166  N3  A1AXF 15 
A1AXF CL1 CL1 CL 0 0 N N N N N N 4.468 -16.129 -25.959 -3.455 1.430  -0.307 CL1 A1AXF 16 
A1AXF H73 H1  H  0 1 N N N N N N 4.365 -9.481  -21.860 4.136  -1.914 0.421  H73 A1AXF 17 
A1AXF H72 H2  H  0 1 N N N N N N 3.901 -8.076  -22.878 4.426  -1.954 -1.335 H72 A1AXF 18 
A1AXF H82 H3  H  0 1 N N N N N N 4.991 -9.149  -24.826 2.552  -0.385 -1.694 H82 A1AXF 19 
A1AXF H83 H4  H  0 1 N N N N N N 3.677 -10.163 -24.137 1.995  -1.825 -0.809 H83 A1AXF 20 
A1AXF H9  H5  H  0 1 N N N N N N 2.855 -13.974 -25.138 -1.061 2.939  0.003  H9  A1AXF 21 
A1AXF H1  H6  H  0 1 N N N N N N 6.903 -16.193 -25.479 -2.659 -1.713 -1.277 H1  A1AXF 22 
A1AXF H3  H7  H  0 1 N N N N N N 7.499 -12.644 -24.424 0.162  -1.790 0.094  H3  A1AXF 23 
A1AXF H53 H8  H  0 1 N N N N N N 6.680 -10.800 -21.955 2.638  1.740  1.288  H53 A1AXF 24 
A1AXF H52 H9  H  0 1 N N N N N N 7.686 -11.056 -23.420 2.928  1.701  -0.468 H52 A1AXF 25 
A1AXF H63 H10 H  0 1 N N N N N N 8.021 -8.795  -22.547 5.069  1.611  0.761  H63 A1AXF 26 
A1AXF H62 H11 H  0 1 N N N N N N 7.194 -8.733  -24.141 4.512  0.171  1.647  H62 A1AXF 27 
A1AXF H23 H12 H  0 1 N N N N N N 6.121 -8.197  -21.488 4.923  0.372  -1.265 H23 A1AXF 28 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
A1AXF F1  C1  SING N N 1  
A1AXF C1  F2  SING N N 2  
A1AXF C1  C2  SING N N 3  
A1AXF C2  C3  DOUB Y N 4  
A1AXF C2  C10 SING Y N 5  
A1AXF C3  C4  SING Y N 6  
A1AXF C4  N1  SING N N 7  
A1AXF C4  N3  DOUB Y N 8  
A1AXF N1  C5  SING N N 9  
A1AXF N1  C8  SING N N 10 
A1AXF C5  C6  SING N N 11 
A1AXF C6  N2  SING N N 12 
A1AXF N2  C7  SING N N 13 
A1AXF C7  C8  SING N N 14 
A1AXF N3  C9  SING Y N 15 
A1AXF C9  C10 DOUB Y N 16 
A1AXF C10 CL1 SING N N 17 
A1AXF C7  H73 SING N N 18 
A1AXF C7  H72 SING N N 19 
A1AXF C8  H82 SING N N 20 
A1AXF C8  H83 SING N N 21 
A1AXF C9  H9  SING N N 22 
A1AXF C1  H1  SING N N 23 
A1AXF C3  H3  SING N N 24 
A1AXF C5  H53 SING N N 25 
A1AXF C5  H52 SING N N 26 
A1AXF C6  H63 SING N N 27 
A1AXF C6  H62 SING N N 28 
A1AXF N2  H23 SING N N 29 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
A1AXF SMILES           ACDLabs              12.01 "FC(F)c1cc(ncc1Cl)N1CCNCC1"                                                            
A1AXF InChI            InChI                1.06  "InChI=1S/C10H12ClF2N3/c11-8-6-15-9(5-7(8)10(12)13)16-3-1-14-2-4-16/h5-6,10,14H,1-4H2" 
A1AXF InChIKey         InChI                1.06  YUJNUNUYEORSDZ-UHFFFAOYSA-N                                                            
A1AXF SMILES_CANONICAL CACTVS               3.385 "FC(F)c1cc(ncc1Cl)N2CCNCC2"                                                            
A1AXF SMILES           CACTVS               3.385 "FC(F)c1cc(ncc1Cl)N2CCNCC2"                                                            
A1AXF SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1c(c(cnc1N2CCNCC2)Cl)C(F)F"                                                          
A1AXF SMILES           "OpenEye OEToolkits" 2.0.7 "c1c(c(cnc1N2CCNCC2)Cl)C(F)F"                                                          
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
A1AXF "SYSTEMATIC NAME" ACDLabs              12.01 "1-[5-chloro-4-(difluoromethyl)pyridin-2-yl]piperazine"           
A1AXF "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "1-[4-[bis(fluoranyl)methyl]-5-chloranyl-pyridin-2-yl]piperazine" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
A1AXF "Create component" 2024-07-10 RCSB 
A1AXF "Initial release"  2025-03-26 RCSB 
# 
