data_G2F
# 
_chem_comp.id                                    G2F 
_chem_comp.name                                  2-deoxy-2-fluoro-alpha-D-glucopyranose 
_chem_comp.type                                  "D-saccharide, alpha linking" 
_chem_comp.pdbx_type                             ATOMS 
_chem_comp.formula                               "C6 H11 F O5" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         "2-deoxy-2-fluoro-alpha-D-glucose; 2-deoxy-2-fluoro-D-glucose; 2-deoxy-2-fluoro-glucose" 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     1999-07-08 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        182.147 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     G2F 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        1EXP 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_pdbx_chem_comp_synonyms.ordinal 
_pdbx_chem_comp_synonyms.comp_id 
_pdbx_chem_comp_synonyms.name 
_pdbx_chem_comp_synonyms.provenance 
_pdbx_chem_comp_synonyms.type 
1 G2F 2-deoxy-2-fluoro-alpha-D-glucose PDB ? 
2 G2F 2-deoxy-2-fluoro-D-glucose       PDB ? 
3 G2F 2-deoxy-2-fluoro-glucose         PDB ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
G2F C1  C1  C 0 1 N N S N N N 21.498 68.515 37.192 -0.546 1.565  -0.248 C1  G2F 1  
G2F C2  C2  C 0 1 N N R N N N 20.776 69.651 37.894 -1.553 0.454  -0.556 C2  G2F 2  
G2F C3  C3  C 0 1 N N S N N N 20.006 68.902 38.975 -1.149 -0.814 0.204  C3  G2F 3  
G2F C4  C4  C 0 1 N N S N N N 19.009 67.892 38.354 0.280  -1.199 -0.190 C4  G2F 4  
G2F C5  C5  C 0 1 N N R N N N 19.764 66.940 37.429 1.216  -0.023 0.103  C5  G2F 5  
G2F C6  C6  C 0 1 N N N N N N 18.856 66.024 36.616 2.636  -0.377 -0.343 C6  G2F 6  
G2F O1  O1  O 0 1 N Y N N N N 22.717 67.779 37.324 -0.581 1.867  1.148  O1  G2F 7  
G2F O3  O3  O 0 1 N N N N N N 19.329 69.802 39.822 -2.041 -1.878 -0.134 O3  G2F 8  
G2F O4  O4  O 0 1 N N N N N N 18.397 67.155 39.407 0.694  -2.338 0.566  O4  G2F 9  
G2F O5  O5  O 0 1 N N N N N N 20.557 67.707 36.490 0.766  1.131  -0.610 O5  G2F 10 
G2F O6  O6  O 0 1 N N N N N N 17.666 66.694 36.216 3.530  0.671  0.035  O6  G2F 11 
G2F F2  F2  F 0 1 N N N N N N 21.161 70.978 37.958 -2.830 0.854  -0.151 F2  G2F 12 
G2F H1  H1  H 0 1 N N N N N N 22.204 69.345 37.037 -0.804 2.457  -0.819 H1  G2F 13 
G2F H2  H2  H 0 1 N N N N N N 20.201 70.299 37.216 -1.556 0.251  -1.627 H2  G2F 14 
G2F H3  H3  H 0 1 N N N N N N 20.735 68.338 39.575 -1.194 -0.626 1.276  H3  G2F 15 
G2F H4  H4  H 0 1 N N N N N N 18.240 68.423 37.773 0.314  -1.435 -1.254 H4  G2F 16 
G2F H5  H5  H 0 1 N N N N N N 20.383 66.311 38.085 1.213  0.186  1.173  H5  G2F 17 
G2F H61 H61 H 0 1 N N N N N N 19.397 65.695 35.717 2.945  -1.308 0.133  H61 G2F 18 
G2F H62 H62 H 0 1 N N N N N N 18.584 65.155 37.233 2.657  -0.499 -1.426 H62 G2F 19 
G2F HO1 HO1 H 0 1 N Y N N N N 22.769 67.126 36.636 0.033  2.565  1.415  HO1 G2F 20 
G2F HO3 HO3 H 0 1 N Y N N N N 18.856 69.316 40.488 -2.966 -1.699 0.082  HO3 G2F 21 
G2F HO4 HO4 H 0 1 N Y N N N N 17.782 66.530 39.041 0.141  -3.121 0.433  HO4 G2F 22 
G2F HO6 HO6 H 0 1 N N N N N N 17.122 66.100 35.713 4.450  0.514  -0.217 HO6 G2F 23 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
G2F C1 C2  SING N N 1  
G2F C1 O1  SING N N 2  
G2F C1 O5  SING N N 3  
G2F C1 H1  SING N N 4  
G2F C2 C3  SING N N 5  
G2F C2 F2  SING N N 6  
G2F C2 H2  SING N N 7  
G2F C3 C4  SING N N 8  
G2F C3 O3  SING N N 9  
G2F C3 H3  SING N N 10 
G2F C4 C5  SING N N 11 
G2F C4 O4  SING N N 12 
G2F C4 H4  SING N N 13 
G2F C5 C6  SING N N 14 
G2F C5 O5  SING N N 15 
G2F C5 H5  SING N N 16 
G2F C6 O6  SING N N 17 
G2F C6 H61 SING N N 18 
G2F C6 H62 SING N N 19 
G2F O1 HO1 SING N N 20 
G2F O3 HO3 SING N N 21 
G2F O4 HO4 SING N N 22 
G2F O6 HO6 SING N N 23 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
G2F SMILES           ACDLabs              12.01 "FC1C(O)C(O)C(OC1O)CO"                                                                 
G2F SMILES_CANONICAL CACTVS               3.370 "OC[C@H]1O[C@H](O)[C@H](F)[C@@H](O)[C@@H]1O"                                           
G2F SMILES           CACTVS               3.370 "OC[CH]1O[CH](O)[CH](F)[CH](O)[CH]1O"                                                  
G2F SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "C([C@@H]1[C@H]([C@@H]([C@H]([C@H](O1)O)F)O)O)O"                                       
G2F SMILES           "OpenEye OEToolkits" 1.7.0 "C(C1C(C(C(C(O1)O)F)O)O)O"                                                             
G2F InChI            InChI                1.03  "InChI=1S/C6H11FO5/c7-3-5(10)4(9)2(1-8)12-6(3)11/h2-6,8-11H,1H2/t2-,3-,4-,5-,6+/m1/s1" 
G2F InChIKey         InChI                1.03  ZCXUVYAZINUVJD-UKFBFLRUSA-N                                                            
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
G2F "SYSTEMATIC NAME"           ACDLabs              12.01 2-deoxy-2-fluoro-alpha-D-glucopyranose                         
G2F "SYSTEMATIC NAME"           "OpenEye OEToolkits" 1.7.0 "(2S,3R,4S,5S,6R)-3-fluoro-6-(hydroxymethyl)oxane-2,4,5-triol" 
G2F "IUPAC CARBOHYDRATE SYMBOL" PDB-CARE             1.0   a-D-Glcp2fluoro                                                
# 
loop_
_pdbx_chem_comp_feature.comp_id 
_pdbx_chem_comp_feature.type 
_pdbx_chem_comp_feature.value 
_pdbx_chem_comp_feature.source 
_pdbx_chem_comp_feature.support 
G2F "CARBOHYDRATE ISOMER"                 D        PDB ? 
G2F "CARBOHYDRATE RING"                   pyranose PDB ? 
G2F "CARBOHYDRATE ANOMER"                 alpha    PDB ? 
G2F "CARBOHYDRATE PRIMARY CARBONYL GROUP" aldose   PDB ? 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
G2F "Create component"         1999-07-08 RCSB 
G2F "Modify name"              2011-01-04 RCSB 
G2F "Modify descriptor"        2011-06-04 RCSB 
G2F "Other modification"       2020-07-03 RCSB 
G2F "Modify synonyms"          2020-07-17 RCSB 
G2F "Modify linking type"      2020-07-17 RCSB 
G2F "Modify leaving atom flag" 2020-07-17 RCSB 
G2F "Modify PCM"               2024-09-27 PDBE 
# 
loop_
_pdbx_chem_comp_pcm.pcm_id 
_pdbx_chem_comp_pcm.comp_id 
_pdbx_chem_comp_pcm.modified_residue_id 
_pdbx_chem_comp_pcm.type 
_pdbx_chem_comp_pcm.category 
_pdbx_chem_comp_pcm.position 
_pdbx_chem_comp_pcm.polypeptide_position 
_pdbx_chem_comp_pcm.comp_id_linking_atom 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession 
1 G2F ASP None Carbohydrate "Amino-acid side chain" "Any position" C1 OD1 ? ? 
2 G2F ASP None Carbohydrate "Amino-acid side chain" "Any position" C1 OD2 ? ? 
3 G2F GLU None Carbohydrate "Amino-acid side chain" "Any position" C1 OE1 ? ? 
4 G2F GLU None Carbohydrate "Amino-acid side chain" "Any position" C1 OE2 ? ? 
# 
