data_J2F
# 
_chem_comp.id                                    J2F 
_chem_comp.name                                  "(2~{S})-2-azanyl-3-[4-[(2-nitrophenyl)methoxy]phenyl]propanoic acid" 
_chem_comp.type                                  "L-peptide linking" 
_chem_comp.pdbx_type                             ATOMP 
_chem_comp.formula                               "C16 H16 N2 O5" 
_chem_comp.mon_nstd_parent_comp_id               TYR 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-08-04 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        316.309 
_chem_comp.one_letter_code                       Y 
_chem_comp.three_letter_code                     J2F 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7YNU 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
J2F N   N1  N 0  1 N N N Y Y N 24.629 -12.654 -1.919  -4.852 -1.133 1.206  N1  J2F 1  
J2F C4  C4  C 0  1 Y N N N N N 22.906 -10.103 -5.345  -2.339 -1.566 -0.607 C4  J2F 2  
J2F C5  C5  C 0  1 Y N N N N N 22.452 -9.897  -6.648  -0.995 -1.843 -0.451 C5  J2F 3  
J2F C6  C6  C 0  1 Y N N N N N 21.546 -10.790 -7.209  -0.080 -0.804 -0.363 C6  J2F 4  
J2F C7  C7  C 0  1 Y N N N N N 21.075 -11.918 -6.478  -0.517 0.510  -0.433 C7  J2F 5  
J2F C8  C8  C 0  1 Y N N N N N 21.530 -12.124 -5.158  -1.862 0.782  -0.588 C8  J2F 6  
J2F C10 C10 C 0  1 Y N N N N N 19.814 -10.678 -10.419 3.544  -0.445 0.040  C10 J2F 7  
J2F C13 C13 C 0  1 Y N N N N N 19.766 -10.400 -13.197 6.140  -1.345 0.347  C13 J2F 8  
J2F C15 C15 C 0  1 Y N N N N N 19.178 -11.665 -11.229 4.582  0.461  0.143  C15 J2F 9  
J2F CA  C1  C 0  1 N N S Y N N 24.229 -12.297 -3.271  -4.904 0.165  0.521  C1  J2F 10 
J2F C11 C11 C 0  1 Y N N N N N 20.426 -9.570  -11.000 3.803  -1.802 0.096  C11 J2F 11 
J2F C12 C12 C 0  1 Y N N N N N 20.404 -9.419  -12.394 5.101  -2.252 0.250  C12 J2F 12 
J2F C14 C14 C 0  1 Y N N N N N 19.157 -11.517 -12.606 5.880  0.012  0.296  C14 J2F 13 
J2F C   C16 C 0  1 N N N Y N Y 25.348 -11.650 -4.035  -6.341 0.585  0.348  C16 J2F 14 
J2F C2  C2  C 0  1 N N N N N N 22.982 -11.381 -3.211  -4.239 0.044  -0.852 C2  J2F 15 
J2F C3  C3  C 0  1 Y N N N N N 22.445 -11.199 -4.603  -2.773 -0.255 -0.675 C3  J2F 16 
J2F C9  C9  C 0  1 N N N N N N 19.828 -10.867 -8.904  2.128  0.045  -0.127 C9  J2F 17 
J2F N2  N2  N 1  1 N N N N N N 18.565 -12.803 -10.574 4.303  1.914  0.089  N2  J2F 18 
J2F O1  O1  O 0  1 N N N N N N 21.142 -10.510 -8.552  1.243  -1.074 -0.210 O1  J2F 19 
J2F O2  O2  O 0  1 N N N N N N 18.959 -14.083 -10.900 3.159  2.310  -0.046 O2  J2F 20 
J2F O3  O3  O -1 1 N N N N N N 17.551 -12.589 -9.565  5.218  2.713  0.180  O3  J2F 21 
J2F O   O5  O 0  1 N N N Y N Y 26.049 -10.733 -3.519  -7.223 -0.240 0.409  O5  J2F 22 
J2F H   H1  H 0  1 N N N Y Y N 23.859 -13.081 -1.445  -5.334 -1.842 0.674  H1  J2F 23 
J2F H2  H2  H 0  1 N Y N Y Y N 25.394 -13.296 -1.957  -3.898 -1.407 1.392  H2  J2F 24 
J2F H4  H4  H 0  1 N N N N N N 23.615 -9.416  -4.907  -3.052 -2.374 -0.679 H4  J2F 25 
J2F H5  H5  H 0  1 N N N N N N 22.802 -9.049  -7.218  -0.657 -2.867 -0.397 H5  J2F 26 
J2F H6  H6  H 0  1 N N N N N N 20.377 -12.608 -6.929  0.194  1.321  -0.365 H6  J2F 27 
J2F H7  H7  H 0  1 N N N N N N 21.186 -12.971 -4.583  -2.204 1.806  -0.642 H7  J2F 28 
J2F H8  H8  H 0  1 N N N N N N 19.749 -10.286 -14.271 7.154  -1.696 0.467  H8  J2F 29 
J2F HA  H9  H 0  1 N N N Y N N 23.939 -13.214 -3.805  -4.377 0.911  1.116  H9  J2F 30 
J2F H10 H10 H 0  1 N N N N N N 20.914 -8.832  -10.381 2.992  -2.511 0.020  H10 J2F 31 
J2F H11 H11 H 0  1 N N N N N N 20.870 -8.560  -12.854 5.304  -3.312 0.290  H11 J2F 32 
J2F H12 H12 H 0  1 N N N N N N 18.673 -12.260 -13.223 6.691  0.720  0.372  H12 J2F 33 
J2F H14 H14 H 0  1 N N N N N N 23.262 -10.403 -2.792  -4.710 -0.763 -1.413 H14 J2F 34 
J2F H15 H15 H 0  1 N N N N N N 22.213 -11.845 -2.576  -4.356 0.982  -1.395 H15 J2F 35 
J2F H16 H16 H 0  1 N N N N N N 19.095 -10.207 -8.417  1.854  0.662  0.728  H16 J2F 36 
J2F H17 H17 H 0  1 N N N N N N 19.617 -11.912 -8.634  2.054  0.635  -1.041 H17 J2F 37 
J2F OXT OXT O 0  1 N Y N Y N Y 25.798 -12.316 -5.216  -6.642 1.874  0.127  OXT J2F 38 
J2F HXT HXT H 0  1 N Y N Y N Y 26.635 -11.955 -5.484  -7.577 2.095  0.022  HXT J2F 39 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
J2F C13 C14 DOUB Y N 1  
J2F C13 C12 SING Y N 2  
J2F C14 C15 SING Y N 3  
J2F C12 C11 DOUB Y N 4  
J2F C15 N2  SING N N 5  
J2F C15 C10 DOUB Y N 6  
J2F C11 C10 SING Y N 7  
J2F O2  N2  DOUB N N 8  
J2F N2  O3  SING N N 9  
J2F C10 C9  SING N N 10 
J2F C9  O1  SING N N 11 
J2F O1  C6  SING N N 12 
J2F C6  C5  DOUB Y N 13 
J2F C6  C7  SING Y N 14 
J2F C5  C4  SING Y N 15 
J2F C7  C8  DOUB Y N 16 
J2F C4  C3  DOUB Y N 17 
J2F C8  C3  SING Y N 18 
J2F C3  C2  SING N N 19 
J2F C   O   DOUB N N 20 
J2F C   CA  SING N N 21 
J2F CA  C2  SING N N 22 
J2F CA  N   SING N N 23 
J2F N   H   SING N N 24 
J2F N   H2  SING N N 25 
J2F C4  H4  SING N N 26 
J2F C5  H5  SING N N 27 
J2F C7  H6  SING N N 28 
J2F C8  H7  SING N N 29 
J2F C13 H8  SING N N 30 
J2F CA  HA  SING N N 31 
J2F C11 H10 SING N N 32 
J2F C12 H11 SING N N 33 
J2F C14 H12 SING N N 34 
J2F C2  H14 SING N N 35 
J2F C2  H15 SING N N 36 
J2F C9  H16 SING N N 37 
J2F C9  H17 SING N N 38 
J2F C   OXT SING N N 39 
J2F OXT HXT SING N N 40 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
J2F InChI            InChI                1.06  "InChI=1S/C16H16N2O5/c17-14(16(19)20)9-11-5-7-13(8-6-11)23-10-12-3-1-2-4-15(12)18(21)22/h1-8,14H,9-10,17H2,(H,19,20)/t14-/m0/s1" 
J2F InChIKey         InChI                1.06  NLFOHNAFILVHGM-AWEZNQCLSA-N                                                                                                      
J2F SMILES_CANONICAL CACTVS               3.385 "N[C@@H](Cc1ccc(OCc2ccccc2[N+]([O-])=O)cc1)C(O)=O"                                                                               
J2F SMILES           CACTVS               3.385 "N[CH](Cc1ccc(OCc2ccccc2[N+]([O-])=O)cc1)C(O)=O"                                                                                 
J2F SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(c(c1)COc2ccc(cc2)C[C@@H](C(=O)O)N)[N+](=O)[O-]"                                                                           
J2F SMILES           "OpenEye OEToolkits" 2.0.7 "c1ccc(c(c1)COc2ccc(cc2)CC(C(=O)O)N)[N+](=O)[O-]"                                                                                
# 
_pdbx_chem_comp_identifier.comp_id           J2F 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "(2~{S})-2-azanyl-3-[4-[(2-nitrophenyl)methoxy]phenyl]propanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
J2F "Create component" 2022-08-04 PDBJ 
J2F "Initial release"  2022-09-21 RCSB 
J2F "Modify backbone"  2023-11-03 PDBE 
J2F "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            J2F 
_pdbx_chem_comp_pcm.modified_residue_id                TYR 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Non-standard residue" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               ? 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   ? 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
