data_40G
# 
_chem_comp.id                                    40G 
_chem_comp.name                                  "N-[(2-amino-6-oxo-1,6-dihydro-9H-purin-9-yl)acetyl]-N-[(2S)-2-aminopropyl]glycine" 
_chem_comp.type                                  peptide-like 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C12 H17 N7 O4" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2010-04-26 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        323.308 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     40G 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        2KVJ 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
40G C      "C'"   C 0 1 N N N Y N Y 30.290 20.210 51.972 3.773  1.776  0.673  "C'"   40G 1  
40G N1     N1     N 0 1 N N N N N N 31.469 16.817 44.521 -4.433 -0.777 0.407  N1     40G 2  
40G C2     C2     C 0 1 N N N N N N 32.126 16.929 45.660 -3.348 -1.223 1.102  C2     40G 3  
40G N2     N2     N 0 1 N N N N N N 33.371 17.209 45.544 -3.480 -2.322 1.913  N2     40G 4  
40G N3     N3     N 0 1 N N N N N N 31.611 16.878 46.866 -2.177 -0.631 1.016  N3     40G 5  
40G C4     C4     C 0 1 Y N N N N N 30.273 16.690 46.827 -2.001 0.444  0.238  C4     40G 6  
40G C5     C5     C 0 1 Y N N N N N 29.482 16.577 45.719 -3.077 0.950  -0.500 C5     40G 7  
40G C6     C6     C 0 1 N N N N N N 30.132 16.618 44.455 -4.331 0.303  -0.399 C6     40G 8  
40G O6     O6     O 0 1 N N N N N N 29.659 16.512 43.335 -5.296 0.709  -1.023 O6     40G 9  
40G N7     N7     N 0 1 Y N N N N N 28.140 16.462 46.077 -2.623 2.025  -1.188 N7     40G 10 
40G C8     C8     C 0 1 Y N N N N N 28.177 16.487 47.376 -1.362 2.205  -0.923 C8     40G 11 
40G N9     N9     N 0 1 Y N N N N N 29.435 16.551 47.897 -0.933 1.251  -0.046 N9     40G 12 
40G N      "N1'"  N 0 1 N N N Y Y N 28.359 15.424 52.536 1.618  -2.829 -0.178 "N1'"  40G 13 
40G O      "O1'"  O 0 1 N N N Y N Y 30.129 21.222 52.630 3.716  2.111  -0.487 "O1'"  40G 14 
40G CA     "C2'"  C 0 1 N N S Y N N 29.339 16.231 53.182 3.051  -2.520 -0.268 "C2'"  40G 15 
40G C2M    C2M    C 0 1 N N N N N N 30.122 15.302 54.048 3.736  -3.536 -1.184 C2M    40G 16 
40G "C3'"  "C3'"  C 0 1 N N N Y N N 30.278 16.883 52.185 3.234  -1.113 -0.839 "C3'"  40G 17 
40G "N4'"  "N4'"  N 0 1 N N N Y N N 29.610 17.889 51.363 2.479  -0.154 -0.029 "N4'"  40G 18 
40G "C5'"  "C5'"  C 0 1 N N N Y N N 29.252 19.118 52.068 3.116  0.495  1.120  "C5'"  40G 19 
40G "C7'"  "C7'"  C 0 1 N N N N N N 29.422 17.801 50.036 1.199  0.131  -0.340 "C7'"  40G 20 
40G "O7'"  "O7'"  O 0 1 N N N N N N 28.970 18.746 49.394 0.672  -0.407 -1.291 "O7'"  40G 21 
40G "C8'"  "C8'"  C 0 1 N N N N N N 29.818 16.519 49.316 0.422  1.117  0.494  "C8'"  40G 22 
40G HN1    HN1    H 0 1 N N N N N N 31.984 16.882 43.666 -5.281 -1.240 0.490  HN1    40G 23 
40G H8     H8     H 0 1 N N N N N N 27.288 16.459 47.989 -0.747 2.991  -1.335 H8     40G 24 
40G H      "HN1'" H 0 0 N N N Y Y N 28.814 14.718 51.993 1.182  -2.790 -1.087 "HN1'" 40G 25 
40G HA     "H22'" H 0 0 N N N Y N N 28.853 17.040 53.747 3.496  -2.569 0.726  "H22'" 40G 26 
40G HN2    HN2    H 0 1 N N N N N N 33.923 17.382 46.360 -4.338 -2.770 1.986  HN2    40G 27 
40G HN2A   HN2A   H 0 0 N N N N N N 33.791 17.255 44.638 -2.717 -2.651 2.413  HN2A   40G 28 
40G "H13'" "H13'" H 0 0 N N N Y N N 30.680 16.102 51.522 4.292  -0.849 -0.823 "H13'" 40G 29 
40G "H23'" "H23'" H 0 0 N N N Y N N 31.092 17.372 52.741 2.869  -1.087 -1.866 "H23'" 40G 30 
40G "H15'" "H15'" H 0 0 N N N Y N N 28.317 19.499 51.631 3.867  -0.170 1.543  "H15'" 40G 31 
40G "H25'" "H25'" H 0 0 N N N Y N N 29.117 18.871 53.131 2.362  0.719  1.875  "H25'" 40G 32 
40G "H18'" "H18'" H 0 0 N N N N N N 30.909 16.398 49.385 0.921  2.086  0.469  "H18'" 40G 33 
40G "H28'" "H28'" H 0 0 N N N N N N 29.311 15.671 49.800 0.370  0.761  1.523  "H28'" 40G 34 
40G H2M    H2M    H 0 1 N N N N N N 29.450 14.828 54.779 3.605  -4.538 -0.776 H2M    40G 35 
40G H2MA   H2MA   H 0 0 N N N N N N 30.902 15.866 54.580 3.291  -3.487 -2.178 H2MA   40G 36 
40G H2MB   H2MB   H 0 0 N N N N N N 30.591 14.527 53.424 4.799  -3.306 -1.250 H2MB   40G 37 
40G OXT    OXT    O 0 1 N Y N Y N Y 31.435 20.059 51.128 4.427  2.540  1.561  OXT    40G 38 
40G H2     HNXT   H 0 0 N Y N Y Y N 27.798 15.995 51.937 1.468  -3.727 0.256  HNXT   40G 39 
40G HXT    HXT    H 0 1 N Y N Y N Y 31.979 20.836 51.189 4.833  3.352  1.227  HXT    40G 40 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
40G C      "C5'"  SING N N 1  
40G C      O      DOUB N N 2  
40G C      OXT    SING N N 3  
40G N1     C2     SING N N 4  
40G C2     N3     DOUB N N 5  
40G N2     C2     SING N N 6  
40G N2     HN2    SING N N 7  
40G C4     N3     SING N N 8  
40G C4     N9     SING Y N 9  
40G C5     C4     DOUB Y N 10 
40G C5     N7     SING Y N 11 
40G C6     N1     SING N N 12 
40G C6     C5     SING N N 13 
40G O6     C6     DOUB N N 14 
40G N7     C8     DOUB Y N 15 
40G C8     N9     SING Y N 16 
40G C8     H8     SING N N 17 
40G N9     "C8'"  SING N N 18 
40G N      CA     SING N N 19 
40G N      H2     SING N N 20 
40G CA     HA     SING N N 21 
40G CA     C2M    SING N N 22 
40G C2M    H2MA   SING N N 23 
40G C2M    H2M    SING N N 24 
40G "C3'"  CA     SING N N 25 
40G "C3'"  "H23'" SING N N 26 
40G "N4'"  "C3'"  SING N N 27 
40G "N4'"  "C5'"  SING N N 28 
40G "C5'"  "H25'" SING N N 29 
40G "C7'"  "N4'"  SING N N 30 
40G "O7'"  "C7'"  DOUB N N 31 
40G "C8'"  "C7'"  SING N N 32 
40G "C8'"  "H28'" SING N N 33 
40G "C8'"  "H18'" SING N N 34 
40G HN1    N1     SING N N 35 
40G H      N      SING N N 36 
40G HN2A   N2     SING N N 37 
40G "H13'" "C3'"  SING N N 38 
40G "H15'" "C5'"  SING N N 39 
40G H2MB   C2M    SING N N 40 
40G OXT    HXT    SING N N 41 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
40G SMILES           ACDLabs              12.01 "O=C(O)CN(C(=O)Cn1c2N=C(NC(=O)c2nc1)N)CC(N)C"                                                                                                  
40G SMILES_CANONICAL CACTVS               3.370 "C[C@H](N)CN(CC(O)=O)C(=O)Cn1cnc2C(=O)NC(=Nc12)N"                                                                                              
40G SMILES           CACTVS               3.370 "C[CH](N)CN(CC(O)=O)C(=O)Cn1cnc2C(=O)NC(=Nc12)N"                                                                                               
40G SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "C[C@@H](CN(CC(=O)O)C(=O)Cn1cnc2c1N=C(NC2=O)N)N"                                                                                               
40G SMILES           "OpenEye OEToolkits" 1.7.0 "CC(CN(CC(=O)O)C(=O)Cn1cnc2c1N=C(NC2=O)N)N"                                                                                                    
40G InChI            InChI                1.03  "InChI=1S/C12H17N7O4/c1-6(13)2-18(4-8(21)22)7(20)3-19-5-15-9-10(19)16-12(14)17-11(9)23/h5-6H,2-4,13H2,1H3,(H,21,22)(H3,14,16,17,23)/t6-/m0/s1" 
40G InChIKey         InChI                1.03  KMNPWJULLUAIHL-LURJTMIESA-N                                                                                                                    
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
40G "SYSTEMATIC NAME" ACDLabs              12.01 "N-[(2-amino-6-oxo-1,6-dihydro-9H-purin-9-yl)acetyl]-N-[(2S)-2-aminopropyl]glycine"    
40G "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.0 "2-[2-(2-azanyl-6-oxo-1H-purin-9-yl)ethanoyl-[(2S)-2-azanylpropyl]amino]ethanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
40G "Create component"  2010-04-26 RCSB 
40G "Modify descriptor" 2011-06-04 RCSB 
40G "Modify backbone"   2023-11-03 PDBE 
40G "Modify PCM"        2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            40G 
_pdbx_chem_comp_pcm.modified_residue_id                ? 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Non-standard residue" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain and backbone" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               ? 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   ? 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
