data_4DG
#

_chem_comp.id                                   4DG
_chem_comp.name                                 "2-[(2-amino-6-oxo-1,6-dihydro-9H-purin-9-yl)methoxy]ethyl dihydrogen phosphate"
_chem_comp.type                                 "DNA OH 3 prime terminus"
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C8 H12 N5 O6 P"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "acyclic guanosine monophosphate; acyclovir monophosphate"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2009-11-09
_chem_comp.pdbx_modified_date                   2020-12-12
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       305.185
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    4DG
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       3KD1
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
4DG  P       P       P  0  1  N  N  N  -0.732  -4.655   3.342   4.961  -0.347  -0.280  P       4DG   1  
4DG  N1      N1      N  0  1  N  N  N   0.607   4.823  -1.786  -5.421  -0.272  -0.285  N1      4DG   2  
4DG  C2      C2      C  0  1  N  N  N  -0.483   4.335  -1.124  -4.915   0.990  -0.386  C2      4DG   3  
4DG  N2      N2      N  0  1  N  N  N  -1.661   5.082  -1.090  -5.767   2.029  -0.663  N2      4DG   4  
4DG  N3      N3      N  0  1  N  N  N  -0.423   3.120  -0.509  -3.635   1.240  -0.225  N3      4DG   5  
4DG  C4      C4      C  0  1  Y  N  N   0.721   2.391  -0.570  -2.768   0.258   0.047  C4      4DG   6  
4DG  C5      C5      C  0  1  Y  N  N   1.833   2.857  -1.262  -3.226  -1.060   0.163  C5      4DG   7  
4DG  C6      C6      C  0  1  N  N  N   1.770   4.119  -1.876  -4.606  -1.314  -0.012  C6      4DG   8  
4DG  O6      O6      O  0  1  N  N  N   2.748   4.595  -2.493  -5.049  -2.447   0.080  O6      4DG   9  
4DG  N7      N7      N  0  1  Y  N  N   2.810   1.943  -1.193  -2.149  -1.837   0.438  N7      4DG  10  
4DG  C8      C8      C  0  1  Y  N  N   2.306   0.931  -0.459  -1.084  -1.092   0.496  C8      4DG  11  
4DG  N9      N9      N  0  1  Y  N  N   1.043   1.193  -0.050  -1.417   0.210   0.261  N9      4DG  12  
4DG  "C1'"   "C1'"   C  0  1  N  N  N   0.239   0.356   0.787  -0.496   1.349   0.241  "C1'"   4DG  13  
4DG  "C4'"   "C4'"   C  0  1  N  N  N  -0.922  -1.799   0.772   1.814   1.932   0.512  "C4'"   4DG  14  
4DG  "O4'"   "O4'"   O  0  1  N  N  N  -0.045  -0.875   0.092   0.832   0.893   0.508  "O4'"   4DG  15  
4DG  "C5'"   "C5'"   C  0  1  N  N  N  -0.171  -2.737   1.743   3.190   1.332   0.807  "C5'"   4DG  16  
4DG  "O5'"   "O5'"   O  0  1  N  N  N  -1.044  -3.581   2.311   3.567   0.459  -0.259  "O5'"   4DG  17  
4DG  OP1     OP1     O  0  1  N  N  N   0.250  -5.615   2.799   6.083   0.604  -0.123  OP1     4DG  18  
4DG  OP2     OP2     O  0  1  N  N  N  -2.010  -5.382   3.689   4.985  -1.410   0.928  OP2     4DG  19  
4DG  HN1     HN1     H  0  1  N  N  N   0.550   5.723  -2.217  -6.372  -0.422  -0.405  HN1     4DG  20  
4DG  HN2     HN2     H  0  1  N  N  N  -2.465   4.726  -0.613  -6.715   1.860  -0.784  HN2     4DG  21  
4DG  HN2A    HN2A    H  0  0  N  N  N  -1.701   5.973  -1.542  -5.422   2.933  -0.737  HN2A    4DG  22  
4DG  H8      H8      H  0  1  N  N  N   2.844   0.024  -0.226  -0.086  -1.452   0.699  H8      4DG  23  
4DG  "H1'"   "H1'"   H  0  1  N  N  N   0.781   0.137   1.719  -0.526   1.824  -0.740  "H1'"   4DG  24  
4DG  "H1'A"  "H1'A"  H  0  0  N  N  N  -0.704   0.870   1.026  -0.793   2.070   1.003  "H1'A"  4DG  25  
4DG  "H4'"   "H4'"   H  0  1  N  N  N  -1.656  -1.218   1.350   1.831   2.419  -0.463  "H4'"   4DG  26  
4DG  "H4'A"  "H4'A"  H  0  0  N  N  N  -1.428  -2.417   0.015   1.564   2.665   1.280  "H4'A"  4DG  27  
4DG  "H5'"   "H5'"   H  0  1  N  N  N   0.586  -3.310   1.188   3.923   2.133   0.898  "H5'"   4DG  28  
4DG  "H5'A"  "H5'A"  H  0  0  N  N  N   0.322  -2.139   2.523   3.148   0.770   1.740  "H5'A"  4DG  29  
4DG  O61     O61     O  0  1  N  Y  N  -0.184  -4.008   4.591   5.109  -1.125  -1.682  O61     4DG  30  
4DG  H11     H11     H  0  1  N  Y  N  -1.915  -6.305   3.485   4.275  -2.066   0.890  H11     4DG  31  
4DG  H12     H12     H  0  1  N  Y  N   0.683  -4.352   4.772   5.928  -1.633  -1.765  H12     4DG  32  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
4DG  P      "O5'"   SING  N  N   1  
4DG  P      OP1     DOUB  N  N   2  
4DG  P      OP2     SING  N  N   3  
4DG  N1     C2      SING  N  N   4  
4DG  N1     C6      SING  N  N   5  
4DG  N1     HN1     SING  N  N   6  
4DG  C2     N2      SING  N  N   7  
4DG  C2     N3      DOUB  N  N   8  
4DG  N2     HN2     SING  N  N   9  
4DG  N2     HN2A    SING  N  N  10  
4DG  N3     C4      SING  N  N  11  
4DG  C4     C5      DOUB  Y  N  12  
4DG  C4     N9      SING  Y  N  13  
4DG  C5     C6      SING  N  N  14  
4DG  C5     N7      SING  Y  N  15  
4DG  C6     O6      DOUB  N  N  16  
4DG  N7     C8      DOUB  Y  N  17  
4DG  C8     N9      SING  Y  N  18  
4DG  C8     H8      SING  N  N  19  
4DG  N9     "C1'"   SING  N  N  20  
4DG  "C1'"  "O4'"   SING  N  N  21  
4DG  "C1'"  "H1'"   SING  N  N  22  
4DG  "C1'"  "H1'A"  SING  N  N  23  
4DG  "C4'"  "O4'"   SING  N  N  24  
4DG  "C4'"  "C5'"   SING  N  N  25  
4DG  "C4'"  "H4'"   SING  N  N  26  
4DG  "C4'"  "H4'A"  SING  N  N  27  
4DG  "C5'"  "O5'"   SING  N  N  28  
4DG  "C5'"  "H5'"   SING  N  N  29  
4DG  "C5'"  "H5'A"  SING  N  N  30  
4DG  P      O61     SING  N  N  31  
4DG  OP2    H11     SING  N  N  32  
4DG  O61    H12     SING  N  N  33  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
4DG  SMILES_CANONICAL  CACTVS                3.352  "NC1=Nc2n(COCCO[P](O)(O)=O)cnc2C(=O)N1"  
4DG  SMILES            CACTVS                3.352  "NC1=Nc2n(COCCO[P](O)(O)=O)cnc2C(=O)N1"  
4DG  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.0  "c1nc2c(n1COCCOP(=O)(O)O)N=C(NC2=O)N"  
4DG  SMILES            "OpenEye OEToolkits"  1.7.0  "c1nc2c(n1COCCOP(=O)(O)O)N=C(NC2=O)N"  
4DG  InChI             InChI                 1.03   "InChI=1S/C8H12N5O6P/c9-8-11-6-5(7(14)12-8)10-3-13(6)4-18-1-2-19-20(15,16)17/h3H,1-2,4H2,(H2,15,16,17)(H3,9,11,12,14)"  
4DG  InChIKey          InChI                 1.03   KUOAJOVOKFATQE-UHFFFAOYSA-N  
#
_pdbx_chem_comp_identifier.comp_id          4DG
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  1.6.1
_pdbx_chem_comp_identifier.identifier       "2-[(2-azanyl-6-oxo-1H-purin-9-yl)methoxy]ethyl dihydrogen phosphate"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
4DG  "Create component"      2009-11-09  RCSB  
4DG  "Modify aromatic_flag"  2011-06-04  RCSB  
4DG  "Modify descriptor"     2011-06-04  RCSB  
4DG  "Modify synonyms"       2020-12-12  PDBE  
#   #
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1  4DG  "acyclovir monophosphate"          PUBCHEM  ?  
2  4DG  135422933                          PUBCHEM  ?  
3  4DG  "acyclic guanosine monophosphate"  PDB      ?  
##
