data_DNG
# 
_chem_comp.id                                    DNG 
_chem_comp.name                                  N-FORMYL-D-NORLEUCINE 
_chem_comp.type                                  "D-PEPTIDE LINKING" 
_chem_comp.pdbx_type                             ATOMP 
_chem_comp.formula                               "C7 H13 N O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2004-01-27 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        159.183 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     DNG 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   Y 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        1S4A 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
DNG C   C   C 0 1 N N N Y N Y 35.208 8.871  4.381 1.619  1.074  -0.027 C    DNG 1  
DNG N   N   N 0 1 N N N Y Y N 36.339 8.087  6.380 0.672  -1.072 -0.649 N    DNG 2  
DNG O   O   O 0 1 N N N Y N Y 35.423 9.289  3.243 2.502  0.798  -0.804 O    DNG 3  
DNG C1  C1  C 0 1 N N N N N N 36.004 7.361  7.442 1.446  -2.088 -0.218 C1   DNG 4  
DNG O1  O1  O 0 1 N N N N N N 35.460 6.262  7.373 1.983  -2.023 0.868  O1   DNG 5  
DNG CA  CA  C 0 1 N N R Y N N 36.051 7.749  4.995 0.481  0.111  0.194  CA   DNG 6  
DNG CB  CB  C 0 1 N N N N N N 37.363 7.531  4.228 -0.840 0.790  -0.173 CB   DNG 7  
DNG CD  CD  C 0 1 N N N N N N 39.365 5.978  3.960 -3.325 0.537  -0.198 CD   DNG 8  
DNG CE  CE  C 0 1 N N N N N N 40.355 7.118  3.709 -4.490 -0.395 0.143  CE   DNG 9  
DNG CG  CG  C 0 1 N N N N N N 38.197 6.407  4.858 -2.004 -0.142 0.168  CG   DNG 10 
DNG OXT OXT O 0 1 N Y N Y N Y 34.229 9.368  5.137 1.655  2.236  0.644  OXT  DNG 11 
DNG H   H   H 0 1 N N N Y Y N 36.832 8.940  6.548 0.243  -1.124 -1.517 H    DNG 12 
DNG HC1 H1  H 0 1 N N N N N N 36.223 7.760  8.421 1.587  -2.961 -0.839 H1   DNG 13 
DNG HA  HA  H 0 1 N N N Y N N 35.469 6.817  4.959 0.457  -0.189 1.241  HA   DNG 14 
DNG HB  HB  H 0 1 N N N N N N 37.129 7.263  3.187 -0.940 1.718  0.391  HB   DNG 15 
DNG HBA HBA H 0 1 N N N N N N 37.947 8.463  4.245 -0.851 1.010  -1.240 HBA  DNG 16 
DNG HD  HD  H 0 1 N N N N N N 39.898 5.147  4.446 -3.337 0.757  -1.266 HD   DNG 17 
DNG HDA HDA H 0 1 N N N N N N 38.962 5.640  2.994 -3.426 1.465  0.365  HDA  DNG 18 
DNG HE  HE  H 0 1 N N N N N N 40.771 7.460  4.668 -4.478 -0.615 1.210  HE   DNG 19 
DNG HEA HEA H 0 1 N N N N N N 39.835 7.953  3.216 -5.431 0.089  -0.118 HEA  DNG 20 
DNG HEB HEB H 0 1 N N N N N N 41.170 6.761  3.063 -4.389 -1.323 -0.421 HEB  DNG 21 
DNG HG  HG  H 0 1 N N N N N N 37.546 5.538  5.032 -1.904 -1.070 -0.395 HG   DNG 22 
DNG HGA HGA H 0 1 N N N N N N 38.600 6.761  5.818 -1.993 -0.362 1.236  HGA  DNG 23 
DNG HXT HXT H 0 1 N Y N Y N Y 33.773 10.050 4.658 2.404  2.821  0.469  HOXT DNG 24 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
DNG O   C   DOUB N N 1  
DNG C   CA  SING N N 2  
DNG C   OXT SING N N 3  
DNG CA  N   SING N N 4  
DNG N   H   SING N N 5  
DNG N   C1  SING N N 6  
DNG O1  C1  DOUB N N 7  
DNG C1  HC1 SING N N 8  
DNG CB  CA  SING N N 9  
DNG HA  CA  SING N N 10 
DNG HB  CB  SING N N 11 
DNG HBA CB  SING N N 12 
DNG CB  CG  SING N N 13 
DNG HDA CD  SING N N 14 
DNG CE  CD  SING N N 15 
DNG CD  HD  SING N N 16 
DNG CD  CG  SING N N 17 
DNG HEB CE  SING N N 18 
DNG HEA CE  SING N N 19 
DNG CE  HE  SING N N 20 
DNG CG  HGA SING N N 21 
DNG CG  HG  SING N N 22 
DNG OXT HXT SING N N 23 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
DNG SMILES           ACDLabs              12.01 "O=CNC(C(=O)O)CCCC"                                                                     
DNG InChI            InChI                1.03  "InChI=1S/C7H13NO3/c1-2-3-4-6(7(10)11)8-5-9/h5-6H,2-4H2,1H3,(H,8,9)(H,10,11)/t6-/m1/s1" 
DNG InChIKey         InChI                1.03  IRIJLKLYPXLQSQ-ZCFIWIBFSA-N                                                             
DNG SMILES_CANONICAL CACTVS               3.370 "CCCC[C@@H](NC=O)C(O)=O"                                                                
DNG SMILES           CACTVS               3.370 "CCCC[CH](NC=O)C(O)=O"                                                                  
DNG SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CCCC[C@H](C(=O)O)NC=O"                                                                 
DNG SMILES           "OpenEye OEToolkits" 1.7.6 "CCCCC(C(=O)O)NC=O"                                                                     
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
DNG "SYSTEMATIC NAME" ACDLabs              12.01 N-formyl-D-norleucine           
DNG "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(2R)-2-formamidohexanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
DNG "Create component"         2004-01-27 RCSB 
DNG "Modify descriptor"        2011-06-04 RCSB 
DNG "Modify component atom id" 2012-09-10 RCSB 
DNG "Modify backbone"          2023-11-03 PDBE 
DNG "Modify PCM"               2024-09-27 PDBE 
# 
loop_
_pdbx_chem_comp_pcm.pcm_id 
_pdbx_chem_comp_pcm.comp_id 
_pdbx_chem_comp_pcm.modified_residue_id 
_pdbx_chem_comp_pcm.type 
_pdbx_chem_comp_pcm.category 
_pdbx_chem_comp_pcm.position 
_pdbx_chem_comp_pcm.polypeptide_position 
_pdbx_chem_comp_pcm.comp_id_linking_atom 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession 
1 DNG DLE Formylation "Named protein modification" "Amino-acid backbone"   N-terminal ? ? ? ? 
2 DNG DLE Norleucine  "Named protein modification" "Amino-acid side chain" N-terminal ? ? ? ? 
# 
