data_N2G
# 
_chem_comp.id                                    N2G 
_chem_comp.name                                  
;2'-deoxy-N-(naphthalen-1-ylmethyl)guanosine 5'-(dihydrogen phosphate)
;
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             ? 
_chem_comp.formula                               "C21 H22 N5 O7 P" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2008-09-26 
_chem_comp.pdbx_modified_date                    2011-06-04 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        487.402 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     N2G 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   Y 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        2V4T 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
N2G P     P     P 0 1 N N N 6.421  -14.965 -14.372 -7.350 -0.853 -0.651 P     N2G 1  
N2G O1P   O1P   O 0 1 N N N 5.511  -16.110 -14.602 -7.749 -0.540 -2.179 O1P   N2G 2  
N2G O2P   O2P   O 0 1 N N N 5.877  -13.596 -14.502 -7.832 0.244  0.219  O2P   N2G 3  
N2G O3P   O3P   O 0 1 N Y N ?      ?       ?       -8.028 -2.239 -0.192 O3P   N2G 4  
N2G "O5'" "O5'" O 0 1 N N N 7.745  -15.098 -15.264 -5.749 -0.971 -0.528 "O5'" N2G 5  
N2G CAZ   CAZ   C 0 1 Y N N 17.863 -17.172 -11.706 5.804  -1.189 -0.049 CAZ   N2G 6  
N2G CAK   CAK   C 0 1 Y N N 16.812 -16.742 -12.499 5.510  -0.840 1.280  CAK   N2G 7  
N2G CAF   CAF   C 0 1 Y N N 16.934 -15.596 -13.285 6.451  -1.016 2.247  CAF   N2G 8  
N2G CAE   CAE   C 0 1 Y N N 18.119 -14.877 -13.273 7.707  -1.538 1.939  CAE   N2G 9  
N2G CAI   CAI   C 0 1 Y N N 19.181 -15.303 -12.479 8.027  -1.886 0.663  CAI   N2G 10 
N2G CAY   CAY   C 0 1 Y N N 19.052 -16.450 -11.698 7.081  -1.719 -0.362 CAY   N2G 11 
N2G CAJ   CAJ   C 0 1 Y N N 20.121 -16.868 -10.911 7.375  -2.068 -1.691 CAJ   N2G 12 
N2G CAG   CAG   C 0 1 Y N N 19.992 -18.010 -10.133 6.433  -1.892 -2.658 CAG   N2G 13 
N2G CAH   CAH   C 0 1 Y N N 18.794 -18.731 -10.143 5.178  -1.370 -2.350 CAH   N2G 14 
N2G CAV   CAV   C 0 1 Y N N 17.729 -18.324 -10.923 4.855  -1.027 -1.074 CAV   N2G 15 
N2G CAM   CAM   C 0 1 N N N 16.452 -19.168 -10.882 3.491  -0.469 -0.761 CAM   N2G 16 
N2G N2    N2    N 0 1 N N N 15.474 -18.491 -11.736 3.571  0.990  -0.657 N2    N2G 17 
N2G C2    C2    C 0 1 N N N 14.278 -18.982 -12.074 2.444  1.721  -0.377 C2    N2G 18 
N2G N1    N1    N 0 1 N N N 13.890 -20.227 -11.560 2.542  3.077  -0.285 N1    N2G 19 
N2G C6    C6    C 0 1 N N N 12.654 -20.833 -11.834 1.448  3.823  -0.010 C6    N2G 20 
N2G O6    O6    O 0 1 N N N 12.378 -21.920 -11.319 1.525  5.037  0.074  O6    N2G 21 
N2G N3    N3    N 0 1 N N N 13.519 -18.240 -12.873 1.302  1.093  -0.210 N3    N2G 22 
N2G C4    C4    C 0 1 Y N N 12.335 -18.843 -13.128 0.177  1.765  0.065  C4    N2G 23 
N2G C5    C5    C 0 1 Y N N 11.867 -20.064 -12.671 0.213  3.160  0.178  C5    N2G 24 
N2G N7    N7    N 0 1 Y N N 10.646 -20.293 -13.162 -1.047 3.573  0.458  N7    N2G 25 
N2G C8    C8    C 0 1 Y N N 10.391 -19.215 -13.902 -1.834 2.539  0.528  C8    N2G 26 
N2G N9    N9    N 0 1 Y N N 11.386 -18.337 -13.889 -1.123 1.400  0.285  N9    N2G 27 
N2G CBE   CBE   C 0 1 N N R 11.421 -16.995 -14.526 -1.653 0.034  0.270  CBE   N2G 28 
N2G OAU   OAU   O 0 1 N N N 10.336 -16.197 -14.036 -3.071 0.048  -0.008 OAU   N2G 29 
N2G CAO   CAO   C 0 1 N N N 11.320 -16.938 -16.054 -1.532 -0.605 1.671  CAO   N2G 30 
N2G CBC   CBC   C 0 1 N N S 10.174 -15.951 -16.290 -2.820 -1.448 1.812  CBC   N2G 31 
N2G CBD   CBD   C 0 1 N N R 10.166 -15.150 -14.992 -3.566 -1.218 0.480  CBD   N2G 32 
N2G CAN   CAN   C 0 1 N N N 8.874  -14.357 -14.791 -5.076 -1.141 0.721  CAN   N2G 33 
N2G "O3'" "O3'" O 0 1 N N N 10.455 -15.077 -17.385 -2.498 -2.830 1.974  "O3'" N2G 34 
N2G H1P   H1P   H 0 1 N N N 5.316  -16.179 -15.529 -8.701 -0.455 -2.328 H1P   N2G 35 
N2G H3P   H3P   H 0 1 N N N ?      ?       ?       -7.758 -3.003 -0.720 H3P   N2G 36 
N2G HAN1  HAN1  H 0 0 N N N 8.942  -13.412 -15.350 -5.297 -0.295 1.371  HAN1  N2G 37 
N2G HAN2  HAN2  H 0 0 N N N 8.743  -14.161 -13.717 -5.415 -2.063 1.194  HAN2  N2G 38 
N2G HAK   HAK   H 0 1 N N N 15.888 -17.300 -12.509 4.541  -0.435 1.533  HAK   N2G 39 
N2G HAF   HAF   H 0 1 N N N 16.108 -15.270 -13.900 6.222  -0.747 3.267  HAF   N2G 40 
N2G HAE   HAE   H 0 1 N N N 18.219 -13.988 -13.878 8.436  -1.667 2.725  HAE   N2G 41 
N2G HAI   HAI   H 0 1 N N N 20.105 -14.744 -12.469 9.004  -2.288 0.439  HAI   N2G 42 
N2G HAJ   HAJ   H 0 1 N N N 21.044 -16.308 -10.906 8.344  -2.473 -1.944 HAJ   N2G 43 
N2G HAG   HAG   H 0 1 N N N 20.817 -18.342 -9.520  6.662  -2.160 -3.679 HAG   N2G 44 
N2G HAH   HAH   H 0 1 N N N 18.700 -19.617 -9.533  4.449  -1.240 -3.136 HAH   N2G 45 
N2G HAM1  HAM1  H 0 0 N N N 16.651 -20.183 -11.256 2.797  -0.739 -1.557 HAM1  N2G 46 
N2G HAM2  HAM2  H 0 0 N N N 16.076 -19.266 -9.853  3.138  -0.882 0.184  HAM2  N2G 47 
N2G H2    H2    H 0 1 N N N 15.720 -17.591 -12.094 4.421  1.439  -0.787 H2    N2G 48 
N2G H1    H1    H 0 1 N N N 14.531 -20.711 -10.964 3.400  3.510  -0.417 H1    N2G 49 
N2G H8    H8    H 0 1 N N N 9.473  -19.071 -14.453 -2.892 2.578  0.738  H8    N2G 50 
N2G HBE   HBE   H 0 1 N N N 12.423 -16.629 -14.258 -1.128 -0.569 -0.470 HBE   N2G 51 
N2G HAO1  HAO1  H 0 0 N N N 12.258 -16.587 -16.510 -0.650 -1.244 1.725  HAO1  N2G 52 
N2G HAO2  HAO2  H 0 0 N N N 11.140 -17.923 -16.510 -1.494 0.166  2.441  HAO2  N2G 53 
N2G HBD   HBD   H 0 1 N N N 10.933 -14.363 -14.939 -3.334 -2.014 -0.228 HBD   N2G 54 
N2G HBC   HBC   H 0 1 N N N 9.223  -16.449 -16.532 -3.418 -1.093 2.651  HBC   N2G 55 
N2G "H3'" "H3'" H 0 1 N N N 10.517 -14.183 -17.069 -1.976 -3.023 2.765  "H3'" N2G 56 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
N2G P     O1P   SING N N 1  
N2G P     O2P   DOUB N N 2  
N2G P     O3P   SING N N 3  
N2G P     "O5'" SING N N 4  
N2G "O5'" CAN   SING N N 5  
N2G CAZ   CAK   SING Y N 6  
N2G CAZ   CAY   DOUB Y N 7  
N2G CAZ   CAV   SING Y N 8  
N2G CAK   CAF   DOUB Y N 9  
N2G CAF   CAE   SING Y N 10 
N2G CAE   CAI   DOUB Y N 11 
N2G CAI   CAY   SING Y N 12 
N2G CAY   CAJ   SING Y N 13 
N2G CAJ   CAG   DOUB Y N 14 
N2G CAG   CAH   SING Y N 15 
N2G CAH   CAV   DOUB Y N 16 
N2G CAV   CAM   SING N N 17 
N2G CAM   N2    SING N N 18 
N2G N2    C2    SING N N 19 
N2G C2    N1    SING N N 20 
N2G C2    N3    DOUB N N 21 
N2G N1    C6    SING N N 22 
N2G C6    O6    DOUB N N 23 
N2G C6    C5    SING N N 24 
N2G N3    C4    SING N N 25 
N2G C4    C5    DOUB Y N 26 
N2G C4    N9    SING Y N 27 
N2G C5    N7    SING Y N 28 
N2G N7    C8    DOUB Y N 29 
N2G C8    N9    SING Y N 30 
N2G N9    CBE   SING N N 31 
N2G CBE   OAU   SING N N 32 
N2G CBE   CAO   SING N N 33 
N2G OAU   CBD   SING N N 34 
N2G CAO   CBC   SING N N 35 
N2G CBC   CBD   SING N N 36 
N2G CBC   "O3'" SING N N 37 
N2G CBD   CAN   SING N N 38 
N2G O1P   H1P   SING N N 39 
N2G CAN   HAN1  SING N N 40 
N2G CAN   HAN2  SING N N 41 
N2G CAK   HAK   SING N N 42 
N2G CAF   HAF   SING N N 43 
N2G CAE   HAE   SING N N 44 
N2G CAI   HAI   SING N N 45 
N2G CAJ   HAJ   SING N N 46 
N2G CAG   HAG   SING N N 47 
N2G CAH   HAH   SING N N 48 
N2G CAM   HAM1  SING N N 49 
N2G CAM   HAM2  SING N N 50 
N2G N2    H2    SING N N 51 
N2G N1    H1    SING N N 52 
N2G C8    H8    SING N N 53 
N2G CBE   HBE   SING N N 54 
N2G CAO   HAO1  SING N N 55 
N2G CAO   HAO2  SING N N 56 
N2G CBD   HBD   SING N N 57 
N2G CBC   HBC   SING N N 58 
N2G "O3'" "H3'" SING N N 59 
N2G O3P   H3P   SING N N 60 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
N2G SMILES           ACDLabs              10.04 "O=C3c4ncn(c4N=C(NCc2c1ccccc1ccc2)N3)C5OC(C(O)C5)COP(=O)(O)O"                                                                                                                                                 
N2G SMILES_CANONICAL CACTVS               3.341 "O[C@H]1C[C@@H](O[C@@H]1CO[P](O)(O)=O)n2cnc3C(=O)NC(=Nc23)NCc4cccc5ccccc45"                                                                                                                                   
N2G SMILES           CACTVS               3.341 "O[CH]1C[CH](O[CH]1CO[P](O)(O)=O)n2cnc3C(=O)NC(=Nc23)NCc4cccc5ccccc45"                                                                                                                                        
N2G SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1ccc2c(c1)cccc2CNC3=Nc4c(ncn4[C@H]5C[C@@H]([C@H](O5)COP(=O)(O)O)O)C(=O)N3"                                                                                                                                  
N2G SMILES           "OpenEye OEToolkits" 1.5.0 "c1ccc2c(c1)cccc2CNC3=Nc4c(ncn4C5CC(C(O5)COP(=O)(O)O)O)C(=O)N3"                                                                                                                                               
N2G InChI            InChI                1.03  "InChI=1S/C21H22N5O7P/c27-15-8-17(33-16(15)10-32-34(29,30)31)26-11-23-18-19(26)24-21(25-20(18)28)22-9-13-6-3-5-12-4-1-2-7-14(12)13/h1-7,11,15-17,27H,8-10H2,(H2,29,30,31)(H2,22,24,25,28)/t15-,16+,17+/m0/s1" 
N2G InChIKey         InChI                1.03  COMPKRGNHXOXMN-GVDBMIGSSA-N                                                                                                                                                                                   
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
N2G "SYSTEMATIC NAME" ACDLabs              10.04 
;2'-deoxy-N-(naphthalen-1-ylmethyl)guanosine 5'-(dihydrogen phosphate)
;
N2G "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,3S,5R)-3-hydroxy-5-[2-(naphthalen-1-ylmethylamino)-6-oxo-1H-purin-9-yl]oxolan-2-yl]methyl dihydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
N2G "Create component"     2008-09-26 EBI  
N2G "Modify aromatic_flag" 2011-06-04 RCSB 
N2G "Modify descriptor"    2011-06-04 RCSB 
# 
