data_P9G
#

_chem_comp.id                                   P9G
_chem_comp.name                                 "diamino(2'-deoxy-5'-guanylic acid-kappaN~8~)(phenanthridine)platinum"
_chem_comp.type                                 "DNA LINKING"
_chem_comp.pdbx_type                            ATOMN
_chem_comp.formula                              "C23 H27 N8 O7 P Pt"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2014-05-02
_chem_comp.pdbx_modified_date                   2014-06-27
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       753.562
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    P9G
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  Y
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  Y
_chem_comp.pdbx_model_coordinates_db_code       4Q8E
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
P9G  "O3'"  "O3'"  O   0  1  N  N  N  35.993   8.705   5.247  ?  ?  ?  "O3'"  P9G   1  
P9G  OP2    OP2    O   0  1  N  N  N  33.393   6.417   9.130  ?  ?  ?  OP2    P9G   2  
P9G  P      P      P   0  1  N  N  N  34.527   5.507   9.461  ?  ?  ?  P      P9G   3  
P9G  OP1    OP1    O   0  1  N  N  N  34.584   4.147   8.862  ?  ?  ?  OP1    P9G   4  
P9G  "O5'"  "O5'"  O   0  1  N  N  N  35.789   6.285   8.886  ?  ?  ?  "O5'"  P9G   5  
P9G  "C5'"  "C5'"  C   0  1  N  N  N  35.775   7.714   8.761  ?  ?  ?  "C5'"  P9G   6  
P9G  "C4'"  "C4'"  C   0  1  N  N  R  36.421   8.118   7.457  ?  ?  ?  "C4'"  P9G   7  
P9G  "O4'"  "O4'"  O   0  1  N  N  N  37.730   7.516   7.363  ?  ?  ?  "O4'"  P9G   8  
P9G  "C1'"  "C1'"  C   0  1  N  N  R  37.766   6.582   6.292  ?  ?  ?  "C1'"  P9G   9  
P9G  "C2'"  "C2'"  C   0  1  N  N  N  36.316   6.326   5.898  ?  ?  ?  "C2'"  P9G  10  
P9G  "C3'"  "C3'"  C   0  1  N  N  S  35.687   7.677   6.195  ?  ?  ?  "C3'"  P9G  11  
P9G  N9     N9     N   0  1  Y  N  N  38.586   5.462   6.736  ?  ?  ?  N9     P9G  12  
P9G  C8     C8     C   0  1  Y  N  N  38.309   4.519   7.697  ?  ?  ?  C8     P9G  13  
P9G  N7     N7     N   0  1  Y  N  N  39.310   3.714   7.925  ?  ?  ?  N7     P9G  14  
P9G  C5     C5     C   0  1  Y  N  N  40.320   4.174   7.087  ?  ?  ?  C5     P9G  15  
P9G  C6     C6     C   0  1  Y  N  N  41.652   3.718   6.910  ?  ?  ?  C6     P9G  16  
P9G  O6     O6     O   0  1  N  N  N  42.219   2.758   7.451  ?  ?  ?  O6     P9G  17  
P9G  N1     N1     N   0  1  Y  N  N  42.338   4.496   5.980  ?  ?  ?  N1     P9G  18  
P9G  C2     C2     C   0  1  Y  N  N  41.816   5.579   5.317  ?  ?  ?  C2     P9G  19  
P9G  N2     N2     N   0  1  N  N  N  42.636   6.206   4.459  ?  ?  ?  N2     P9G  20  
P9G  N3     N3     N   0  1  Y  N  N  40.584   6.022   5.487  ?  ?  ?  N3     P9G  21  
P9G  C4     C4     C   0  1  Y  N  N  39.898   5.278   6.379  ?  ?  ?  C4     P9G  22  
P9G  PT1    PT1    PT  0  0  N  N  N  39.363   2.127   9.233  ?  ?  ?  PT1    P9G  23  
P9G  N12    N12    N   0  1  N  N  N  39.643   0.865   7.677  ?  ?  ?  N12    P9G  24  
P9G  N11    N11    N   0  1  N  N  N  39.416   0.548  10.523  ?  ?  ?  N11    P9G  25  
P9G  N10    N10    N   0  1  Y  N  N  39.083   3.394  10.795  ?  ?  ?  N10    P9G  26  
P9G  C18    C18    C   0  1  Y  N  N  38.171   3.090  11.747  ?  ?  ?  C18    P9G  27  
P9G  C13    C13    C   0  1  Y  N  N  37.980   3.938  12.825  ?  ?  ?  C13    P9G  28  
P9G  C12    C12    C   0  1  Y  N  N  37.032   3.626  13.794  ?  ?  ?  C12    P9G  29  
P9G  C11    C11    C   0  1  Y  N  N  36.837   4.476  14.871  ?  ?  ?  C11    P9G  30  
P9G  C10    C10    C   0  1  Y  N  N  37.593   5.631  14.985  ?  ?  ?  C10    P9G  31  
P9G  C16    C16    C   0  1  Y  N  N  39.846   4.530  10.910  ?  ?  ?  C16    P9G  32  
P9G  C22    C22    C   0  1  Y  N  N  40.806   4.822   9.957  ?  ?  ?  C22    P9G  33  
P9G  C21    C21    C   0  1  Y  N  N  41.547   5.996  10.049  ?  ?  ?  C21    P9G  34  
P9G  C20    C20    C   0  1  Y  N  N  41.357   6.854  11.119  ?  ?  ?  C20    P9G  35  
P9G  C19    C19    C   0  1  Y  N  N  40.411   6.554  12.087  ?  ?  ?  C19    P9G  36  
P9G  C15    C15    C   0  1  Y  N  N  39.656   5.387  11.984  ?  ?  ?  C15    P9G  37  
P9G  C14    C14    C   0  1  Y  N  N  38.726   5.088  12.936  ?  ?  ?  C14    P9G  38  
P9G  C9     C9     C   0  1  Y  N  N  38.535   5.940  14.013  ?  ?  ?  C9     P9G  39  
P9G  H1     H1     H   0  1  N  N  N  35.563   9.512   5.505  ?  ?  ?  H1     P9G  40  
P9G  H3     H3     H   0  1  N  N  N  33.831   4.017   8.298  ?  ?  ?  H3     P9G  41  
P9G  H4     H4     H   0  1  N  N  N  36.332   8.160   9.598  ?  ?  ?  H4     P9G  42  
P9G  H5     H5     H   0  1  N  N  N  34.735   8.072   8.780  ?  ?  ?  H5     P9G  43  
P9G  H6     H6     H   0  1  N  N  N  36.518   9.214   7.438  ?  ?  ?  H6     P9G  44  
P9G  H7     H7     H   0  1  N  N  N  38.263   7.052   5.431  ?  ?  ?  H7     P9G  45  
P9G  H8     H8     H   0  1  N  N  N  35.867   5.529   6.509  ?  ?  ?  H8     P9G  46  
P9G  H9     H9     H   0  1  N  N  N  36.228   6.065   4.833  ?  ?  ?  H9     P9G  47  
P9G  H10    H10    H   0  1  N  N  N  34.607   7.581   6.379  ?  ?  ?  H10    P9G  48  
P9G  H11    H11    H   0  1  N  N  N  37.361   4.452   8.210  ?  ?  ?  H11    P9G  49  
P9G  H12    H12    H   0  1  N  N  N  43.285   4.246   5.780  ?  ?  ?  H12    P9G  50  
P9G  H13    H13    H   0  1  N  N  N  42.313   7.005   3.952  ?  ?  ?  H13    P9G  51  
P9G  H14    H14    H   0  1  N  N  N  43.570   5.874   4.327  ?  ?  ?  H14    P9G  52  
P9G  H15    H15    H   0  1  N  N  N  39.714  -0.073   8.017  ?  ?  ?  H15    P9G  53  
P9G  H16    H16    H   0  1  N  N  N  38.868   0.934   7.048  ?  ?  ?  H16    P9G  54  
P9G  H17    H17    H   0  1  N  N  N  39.294   0.878  11.459  ?  ?  ?  H17    P9G  55  
P9G  H18    H18    H   0  1  N  N  N  38.682  -0.092  10.297  ?  ?  ?  H18    P9G  56  
P9G  H19    H19    H   0  1  N  N  N  37.590   2.183  11.666  ?  ?  ?  H19    P9G  57  
P9G  H20    H20    H   0  1  N  N  N  36.448   2.722  13.707  ?  ?  ?  H20    P9G  58  
P9G  H21    H21    H   0  1  N  N  N  36.097   4.238  15.620  ?  ?  ?  H21    P9G  59  
P9G  H22    H22    H   0  1  N  N  N  37.450   6.290  15.829  ?  ?  ?  H22    P9G  60  
P9G  H23    H23    H   0  1  N  N  N  40.980   4.137   9.140  ?  ?  ?  H23    P9G  61  
P9G  H24    H24    H   0  1  N  N  N  42.271   6.238   9.285  ?  ?  ?  H24    P9G  62  
P9G  H25    H25    H   0  1  N  N  N  41.945   7.756  11.199  ?  ?  ?  H25    P9G  63  
P9G  H26    H26    H   0  1  N  N  N  40.259   7.224  12.920  ?  ?  ?  H26    P9G  64  
P9G  H27    H27    H   0  1  N  N  N  39.119   6.845  14.096  ?  ?  ?  H27    P9G  65  
P9G  OP3    O1     O   0  1  N  Y  N       ?       ?       ?  ?  ?  ?  O1     P9G  66  
P9G  H29    H29    H   0  1  N  N  N       ?       ?       ?  ?  ?  ?  H29    P9G  67  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
P9G  N2     C2     SING  N  N   1  
P9G  "O3'"  "C3'"  SING  N  N   2  
P9G  C2     N3     DOUB  Y  N   3  
P9G  C2     N1     SING  Y  N   4  
P9G  N3     C4     SING  Y  N   5  
P9G  "C2'"  "C3'"  SING  N  N   6  
P9G  "C2'"  "C1'"  SING  N  N   7  
P9G  N1     C6     SING  Y  N   8  
P9G  "C3'"  "C4'"  SING  N  N   9  
P9G  "C1'"  N9     SING  N  N  10  
P9G  "C1'"  "O4'"  SING  N  N  11  
P9G  C4     N9     SING  Y  N  12  
P9G  C4     C5     DOUB  Y  N  13  
P9G  N9     C8     SING  Y  N  14  
P9G  C6     C5     SING  Y  N  15  
P9G  C6     O6     DOUB  N  N  16  
P9G  C5     N7     SING  Y  N  17  
P9G  "O4'"  "C4'"  SING  N  N  18  
P9G  "C4'"  "C5'"  SING  N  N  19  
P9G  N12    PT1    SING  N  N  20  
P9G  C8     N7     DOUB  Y  N  21  
P9G  N7     PT1    SING  N  N  22  
P9G  "C5'"  "O5'"  SING  N  N  23  
P9G  OP1    P      SING  N  N  24  
P9G  "O5'"  P      SING  N  N  25  
P9G  OP2    P      DOUB  N  N  26  
P9G  PT1    N11    SING  N  N  27  
P9G  PT1    N10    SING  N  N  28  
P9G  C22    C21    DOUB  Y  N  29  
P9G  C22    C16    SING  Y  N  30  
P9G  C21    C20    SING  Y  N  31  
P9G  N10    C16    DOUB  Y  N  32  
P9G  N10    C18    SING  Y  N  33  
P9G  C16    C15    SING  Y  N  34  
P9G  C20    C19    DOUB  Y  N  35  
P9G  C18    C13    DOUB  Y  N  36  
P9G  C15    C19    SING  Y  N  37  
P9G  C15    C14    DOUB  Y  N  38  
P9G  C13    C14    SING  Y  N  39  
P9G  C13    C12    SING  Y  N  40  
P9G  C14    C9     SING  Y  N  41  
P9G  C12    C11    DOUB  Y  N  42  
P9G  C9     C10    DOUB  Y  N  43  
P9G  C11    C10    SING  Y  N  44  
P9G  "O3'"  H1     SING  N  N  45  
P9G  OP1    H3     SING  N  N  46  
P9G  "C5'"  H4     SING  N  N  47  
P9G  "C5'"  H5     SING  N  N  48  
P9G  "C4'"  H6     SING  N  N  49  
P9G  "C1'"  H7     SING  N  N  50  
P9G  "C2'"  H8     SING  N  N  51  
P9G  "C2'"  H9     SING  N  N  52  
P9G  "C3'"  H10    SING  N  N  53  
P9G  C8     H11    SING  N  N  54  
P9G  N1     H12    SING  N  N  55  
P9G  N2     H13    SING  N  N  56  
P9G  N2     H14    SING  N  N  57  
P9G  N12    H15    SING  N  N  58  
P9G  N12    H16    SING  N  N  59  
P9G  N11    H17    SING  N  N  60  
P9G  N11    H18    SING  N  N  61  
P9G  C18    H19    SING  N  N  62  
P9G  C12    H20    SING  N  N  63  
P9G  C11    H21    SING  N  N  64  
P9G  C10    H22    SING  N  N  65  
P9G  C22    H23    SING  N  N  66  
P9G  C21    H24    SING  N  N  67  
P9G  C20    H25    SING  N  N  68  
P9G  C19    H26    SING  N  N  69  
P9G  C9     H27    SING  N  N  70  
P9G  P      OP3    SING  N  N  71  
P9G  OP3    H29    SING  N  N  72  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
P9G  SMILES            ACDLabs               12.01  "O=P(O)(O)OCC6OC(n2cn(c1c2N=C(N)NC1=O)[Pt](N)(N)n5c3ccccc3c4ccccc4c5)CC6O"  
P9G  InChI             InChI                 1.03   "InChI=1S/C13H9N.C10H14N5O7P.2H2N.Pt/c1-2-6-11-10(5-1)9-14-13-8-4-3-7-12(11)13;11-10-13-8-7(9(17)14-10)12-3-15(8)6-1-4(16)5(22-6)2-21-23(18,19)20;;;/h1-9H;3-6,16H,1-2H2,(H2,18,19,20)(H3,11,13,14,17);2*1H2;/q;;2*-1;+2/t;4-,5+,6+;;;/m.0.../s1"  
P9G  InChIKey          InChI                 1.03   ZHXCYGVJRWIEAF-LKLUREFCSA-N  
P9G  SMILES_CANONICAL  CACTVS                3.385  "N[Pt](N)(|n1cc2ccccc2c3ccccc13)|n4cn([C@H]5C[C@H](O)[C@@H](CO[P](O)(O)=O)O5)c6nc(N)[nH]c(=O)c46"  
P9G  SMILES            CACTVS                3.385  "N[Pt](N)(|n1cc2ccccc2c3ccccc13)|n4cn([CH]5C[CH](O)[CH](CO[P](O)(O)=O)O5)c6nc(N)[nH]c(=O)c46"  
P9G  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.6  "C1[C@@H]([C@H](O[C@H]1N2C=[N](C3=C2N=C(NC3=O)N)[Pt](N)(N)[N]4=C5C=CC=CC5=C6C=CC=CC6=C4)COP(=O)(O)O)O"  
P9G  SMILES            "OpenEye OEToolkits"  1.7.6  "C1C(C(OC1N2C=[N](C3=C2N=C(NC3=O)N)[Pt](N)(N)[N]4=C5C=CC=CC5=C6C=CC=CC6=C4)COP(=O)(O)O)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
P9G  "SYSTEMATIC NAME"  ACDLabs               12.01  "diamino(2'-deoxy-5'-guanylic acid-kappaN~8~)(phenanthridine)platinum"  
P9G  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.7.6  "bis(azanyl)-[2-azanyl-6-oxidanylidene-9-[(2R,4S,5R)-4-oxidanyl-5-(phosphonooxymethyl)oxolan-2-yl]-1H-purin-7-yl]-phenanthridin-5-yl-platinum"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
P9G  "Create component"  2014-05-02  RCSB  
P9G  "Initial release"   2014-07-02  RCSB  
##
