data_N2H
# 
_chem_comp.id                                    N2H 
_chem_comp.name                                  "(4-azanylbutylamino)methanediol" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C5 H14 N2 O2" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         "N-(dihydroxymethyl)putrescine" 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2015-12-31 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        134.177 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     N2H 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5H8I 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
N2H C4  C1  C 0 1 N N N N N N 52.287 83.419 -40.810 -1.037 0.467  -0.283 C4  N2H 1  
N2H C5  C2  C 0 1 N N N N N N 51.051 84.055 -41.481 -2.273 -0.262 0.248  C5  N2H 2  
N2H C6  C3  C 0 1 N N N N N N 51.214 85.583 -41.390 -3.533 0.374  -0.341 C6  N2H 3  
N2H O8  O1  O 0 1 N N N N N N 54.156 79.602 -41.750 2.906  -1.299 -0.307 O8  N2H 4  
N2H C1  C4  C 0 1 N N N N N N 53.890 79.945 -40.360 2.642  -0.054 0.342  C1  N2H 5  
N2H O9  O2  O 0 1 N N N N N N 52.675 79.266 -40.066 3.733  0.841  0.119  O9  N2H 6  
N2H N2  N1  N 0 1 N N N N N N 53.537 81.419 -40.149 1.410  0.531  -0.204 N2  N2H 7  
N2H C3  C5  C 0 1 N N N N N N 52.311 81.874 -40.881 0.223  -0.169 0.306  C3  N2H 8  
N2H N7  N2  N 0 1 N N N N N N 49.941 86.284 -41.632 -4.720 -0.326 0.169  N7  N2H 9  
N2H H1  H1  H 0 1 N N N N N N 53.189 83.803 -41.309 -1.009 0.390  -1.370 H1  N2H 10 
N2H H2  H2  H 0 1 N N N N N N 52.299 83.718 -39.751 -1.083 1.517  0.005  H2  N2H 11 
N2H H3  H3  H 0 1 N N N N N N 50.136 83.742 -40.957 -2.227 -1.312 -0.040 H3  N2H 12 
N2H H4  H4  H 0 1 N N N N N N 50.994 83.745 -42.535 -2.301 -0.185 1.335  H4  N2H 13 
N2H H5  H5  H 0 1 N N N N N N 51.948 85.908 -42.142 -3.579 1.424  -0.053 H5  N2H 14 
N2H H6  H6  H 0 1 N N N N N N 51.578 85.843 -40.385 -3.505 0.296  -1.428 H6  N2H 15 
N2H H7  H7  H 0 1 N N N N N N 54.368 78.678 -41.814 3.024  -1.227 -1.264 H7  N2H 16 
N2H H8  H8  H 0 1 N N N N N N 52.425 79.438 -39.166 4.581  0.519  0.454  H8  N2H 17 
N2H H9  H9  H 0 1 N N N N N N 54.310 81.973 -40.459 1.425  0.529  -1.213 H9  N2H 18 
N2H H11 H11 H 0 1 N N N N N N 51.411 81.460 -40.403 0.195  -0.091 1.393  H11 N2H 19 
N2H H12 H12 H 0 1 N N N N N N 52.354 81.545 -41.930 0.269  -1.219 0.018  H12 N2H 20 
N2H H13 H13 H 0 1 N N N N N N 50.086 87.271 -41.565 -4.734 -0.324 1.178  H13 N2H 21 
N2H H14 H14 H 0 1 N N N N N N 49.605 86.058 -42.546 -5.566 0.075  -0.206 H14 N2H 22 
N2H H16 H16 H 0 1 N N N N N N 54.713 79.641 -39.697 2.522  -0.220 1.413  H16 N2H 23 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
N2H O8 C1  SING N N 1  
N2H N7 C6  SING N N 2  
N2H C5 C6  SING N N 3  
N2H C5 C4  SING N N 4  
N2H C3 C4  SING N N 5  
N2H C3 N2  SING N N 6  
N2H C1 N2  SING N N 7  
N2H C1 O9  SING N N 8  
N2H C4 H1  SING N N 9  
N2H C4 H2  SING N N 10 
N2H C5 H3  SING N N 11 
N2H C5 H4  SING N N 12 
N2H C6 H5  SING N N 13 
N2H C6 H6  SING N N 14 
N2H O8 H7  SING N N 15 
N2H O9 H8  SING N N 16 
N2H N2 H9  SING N N 17 
N2H C3 H11 SING N N 18 
N2H C3 H12 SING N N 19 
N2H N7 H13 SING N N 20 
N2H N7 H14 SING N N 21 
N2H C1 H16 SING N N 22 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
N2H InChI            InChI                1.03  "InChI=1S/C5H14N2O2/c6-3-1-2-4-7-5(8)9/h5,7-9H,1-4,6H2" 
N2H InChIKey         InChI                1.03  JXQFUOSMIWOVKO-UHFFFAOYSA-N                             
N2H SMILES_CANONICAL CACTVS               3.385 "NCCCCNC(O)O"                                           
N2H SMILES           CACTVS               3.385 "NCCCCNC(O)O"                                           
N2H SMILES_CANONICAL "OpenEye OEToolkits" 2.0.4 "C(CCNC(O)O)CN"                                         
N2H SMILES           "OpenEye OEToolkits" 2.0.4 "C(CCNC(O)O)CN"                                         
# 
_pdbx_chem_comp_identifier.comp_id           N2H 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.4 
_pdbx_chem_comp_identifier.identifier        "(4-azanylbutylamino)methanediol" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
N2H "Create component" 2015-12-31 RCSB 
N2H "Initial release"  2016-04-20 RCSB 
N2H "Modify synonyms"  2021-03-01 PDBE 
N2H "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      N2H 
_pdbx_chem_comp_synonyms.name         "N-(dihydroxymethyl)putrescine" 
_pdbx_chem_comp_synonyms.provenance   ? 
_pdbx_chem_comp_synonyms.type         ? 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            N2H 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C1 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
