data_WFH
# 
_chem_comp.id                                    WFH 
_chem_comp.name                                  "(2S)-2-{[(R)-{[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxy}(hydroxy)phosphoryl]amino}propanoic acid (non-preferred name)" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C13 H19 N6 O8 P" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         
;Alanyl-5'-O-adenosine phosphoramidate
;
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-10-02 
_chem_comp.pdbx_modified_date                    2024-10-11 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        418.299 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     WFH 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8UAX 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
WFH C8    C1  C 0 1 Y N N N N N -38.188 -12.479 16.901 1.999  -1.137 -0.477 C8    WFH 1  
WFH C6    C2  C 0 1 Y N N N N N -36.782 -14.473 14.441 5.452  -1.716 0.155  C6    WFH 2  
WFH C4    C3  C 0 1 Y N N N N N -36.707 -12.248 15.302 3.721  -0.053 0.373  C4    WFH 3  
WFH OA    O1  O 0 1 N N N N N N -35.180 -14.443 22.640 -3.030 -2.501 -1.976 OA    WFH 4  
WFH C     C4  C 0 1 N N N N N N -35.697 -13.400 23.024 -2.896 -2.747 -0.800 C     WFH 5  
WFH O     O2  O 0 1 N N N N N N -35.048 -12.328 23.237 -2.146 -3.792 -0.415 O     WFH 6  
WFH CA    C5  C 0 1 N N S N N N -37.174 -13.528 23.190 -3.573 -1.883 0.232  CA    WFH 7  
WFH CB    C6  C 0 1 N N N N N N -37.561 -14.755 24.013 -4.530 -2.738 1.066  CB    WFH 8  
WFH N     N1  N 0 1 N N N N N N -37.691 -13.664 21.836 -4.327 -0.817 -0.440 N     WFH 9  
WFH P     P1  P 0 1 N N N N N N -38.732 -12.509 21.323 -4.290 0.606  0.458  P     WFH 10 
WFH O1P   O3  O 0 1 N N N N N N -39.626 -13.028 20.056 -5.059 1.655  -0.249 O1P   WFH 11 
WFH O2P   O4  O 0 1 N N N N N N -39.557 -12.249 22.584 -4.943 0.345  1.906  O2P   WFH 12 
WFH "O5'" O5  O 0 1 N N N N N N -37.982 -11.119 20.960 -2.764 1.088  0.637  "O5'" WFH 13 
WFH "C5'" C7  C 0 1 N N N N N N -37.044 -10.984 19.903 -2.010 1.693  -0.416 "C5'" WFH 14 
WFH "C4'" C8  C 0 1 N N R N N N -37.177 -9.717  19.043 -0.605 2.027  0.089  "C4'" WFH 15 
WFH "C3'" C9  C 0 1 N N S N N N -38.578 -9.332  18.499 0.200  2.760  -1.006 "C3'" WFH 16 
WFH "O3'" O6  O 0 1 N N N N N N -38.926 -7.999  18.841 0.177  4.171  -0.784 "O3'" WFH 17 
WFH "C2'" C10 C 0 1 N N R N N N -38.523 -9.456  16.969 1.635  2.210  -0.849 "C2'" WFH 18 
WFH "O2'" O7  O 0 1 N N N N N N -38.670 -8.190  16.279 2.544  3.265  -0.528 "O2'" WFH 19 
WFH "C1'" C11 C 0 1 N N R N N N -37.156 -10.124 16.675 1.527  1.209  0.323  "C1'" WFH 20 
WFH "O4'" O8  O 0 1 N N N N N N -36.355 -9.969  17.881 0.137  0.815  0.347  "O4'" WFH 21 
WFH N9    N2  N 0 1 Y N N N N N -37.331 -11.587 16.293 2.384  0.046  0.081  N9    WFH 22 
WFH C5    C12 C 0 1 Y N N N N N -37.220 -13.555 15.332 4.111  -1.341 -0.030 C5    WFH 23 
WFH N7    N3  N 0 1 Y N N N N N -38.126 -13.705 16.309 3.013  -1.951 -0.538 N7    WFH 24 
WFH N3    N4  N 0 1 Y N N N N N -35.767 -11.887 14.362 4.626  0.757  0.911  N3    WFH 25 
WFH C2    C13 C 0 1 Y N N N N N -35.402 -12.847 13.498 5.872  0.363  1.065  C2    WFH 26 
WFH N1    N5  N 0 1 Y N N N N N -35.877 -14.122 13.512 6.286  -0.837 0.702  N1    WFH 27 
WFH N6    N6  N 0 1 N N N N N N -37.298 -15.709 14.557 5.895  -2.972 -0.223 N6    WFH 28 
WFH H1    H1  H 0 1 N N N N N N -38.826 -12.238 17.738 0.999  -1.367 -0.814 H1    WFH 29 
WFH H2    H2  H 0 1 N N N N N N -34.127 -12.473 23.053 -1.732 -4.317 -1.113 H2    WFH 30 
WFH H3    H3  H 0 1 N N N N N N -37.578 -12.623 23.668 -2.820 -1.440 0.884  H3    WFH 31 
WFH H4    H4  H 0 1 N N N N N N -37.169 -14.650 25.035 -5.282 -3.181 0.414  H4    WFH 32 
WFH H5    H5  H 0 1 N N N N N N -38.657 -14.842 24.048 -3.969 -3.529 1.564  H5    WFH 33 
WFH H6    H6  H 0 1 N N N N N N -37.136 -15.657 23.549 -5.019 -2.113 1.813  H6    WFH 34 
WFH H7    H7  H 0 1 N N N N N N -38.163 -14.544 21.780 -5.277 -1.105 -0.621 H7    WFH 35 
WFH H8    H8  H 0 1 N N N N N N -40.471 -12.439 22.410 -4.489 -0.332 2.426  H8    WFH 36 
WFH H9    H9  H 0 1 N N N N N N -37.156 -11.854 19.240 -1.940 1.002  -1.256 H9    WFH 37 
WFH H10   H10 H 0 1 N N N N N N -36.036 -10.987 20.344 -2.507 2.608  -0.739 H10   WFH 38 
WFH H11   H11 H 0 1 N N N N N N -36.775 -8.863  19.608 -0.662 2.636  0.991  H11   WFH 39 
WFH H12   H12 H 0 1 N N N N N N -39.321 -10.042 18.892 -0.196 2.524  -1.994 H12   WFH 40 
WFH H13   H13 H 0 1 N N N N N N -38.962 -7.913  19.786 0.668  4.681  -1.443 H13   WFH 41 
WFH H14   H14 H 0 1 N N N N N N -39.318 -10.145 16.648 1.951  1.700  -1.759 H14   WFH 42 
WFH H15   H15 H 0 1 N N N N N N -39.518 -7.814  16.484 2.604  3.952  -1.206 H15   WFH 43 
WFH H16   H16 H 0 1 N N N N N N -36.678 -9.592  15.839 1.799  1.693  1.261  H16   WFH 44 
WFH H17   H17 H 0 1 N N N N N N -34.680 -12.589 12.737 6.583  1.046  1.506  H17   WFH 45 
WFH H18   H18 H 0 1 N N N N N N -36.904 -16.302 13.855 5.277  -3.605 -0.621 H18   WFH 46 
WFH H19   H19 H 0 1 N N N N N N -37.083 -16.076 15.462 6.824  -3.219 -0.090 H19   WFH 47 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
WFH C2    N1    DOUB Y N 1  
WFH C2    N3    SING Y N 2  
WFH N1    C6    SING Y N 3  
WFH N3    C4    DOUB Y N 4  
WFH C6    N6    SING N N 5  
WFH C6    C5    DOUB Y N 6  
WFH C4    C5    SING Y N 7  
WFH C4    N9    SING Y N 8  
WFH C5    N7    SING Y N 9  
WFH "O2'" "C2'" SING N N 10 
WFH N9    "C1'" SING N N 11 
WFH N9    C8    SING Y N 12 
WFH N7    C8    DOUB Y N 13 
WFH "C1'" "C2'" SING N N 14 
WFH "C1'" "O4'" SING N N 15 
WFH "C2'" "C3'" SING N N 16 
WFH "O4'" "C4'" SING N N 17 
WFH "C3'" "O3'" SING N N 18 
WFH "C3'" "C4'" SING N N 19 
WFH "C4'" "C5'" SING N N 20 
WFH "C5'" "O5'" SING N N 21 
WFH O1P   P     DOUB N N 22 
WFH "O5'" P     SING N N 23 
WFH P     N     SING N N 24 
WFH P     O2P   SING N N 25 
WFH N     CA    SING N N 26 
WFH OA    C     DOUB N N 27 
WFH C     CA    SING N N 28 
WFH C     O     SING N N 29 
WFH CA    CB    SING N N 30 
WFH C8    H1    SING N N 31 
WFH O     H2    SING N N 32 
WFH CA    H3    SING N N 33 
WFH CB    H4    SING N N 34 
WFH CB    H5    SING N N 35 
WFH CB    H6    SING N N 36 
WFH N     H7    SING N N 37 
WFH O2P   H8    SING N N 38 
WFH "C5'" H9    SING N N 39 
WFH "C5'" H10   SING N N 40 
WFH "C4'" H11   SING N N 41 
WFH "C3'" H12   SING N N 42 
WFH "O3'" H13   SING N N 43 
WFH "C2'" H14   SING N N 44 
WFH "O2'" H15   SING N N 45 
WFH "C1'" H16   SING N N 46 
WFH C2    H17   SING N N 47 
WFH N6    H18   SING N N 48 
WFH N6    H19   SING N N 49 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
WFH SMILES           ACDLabs              12.01 "O=C(O)C(C)NP(=O)(O)OCC1OC(n2cnc3c(N)ncnc32)C(O)C1O"                                                                                                                                            
WFH InChI            InChI                1.06  "InChI=1S/C13H19N6O8P/c1-5(13(22)23)18-28(24,25)26-2-6-8(20)9(21)12(27-6)19-4-17-7-10(14)15-3-16-11(7)19/h3-6,8-9,12,20-21H,2H2,1H3,(H,22,23)(H2,14,15,16)(H2,18,24,25)/t5-,6+,8+,9+,12+/m0/s1" 
WFH InChIKey         InChI                1.06  FRQHIZTYMNUOJX-MACXSXHHSA-N                                                                                                                                                                     
WFH SMILES_CANONICAL CACTVS               3.385 "C[C@H](N[P](O)(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1O)n2cnc3c(N)ncnc23)C(O)=O"                                                                                                                     
WFH SMILES           CACTVS               3.385 "C[CH](N[P](O)(=O)OC[CH]1O[CH]([CH](O)[CH]1O)n2cnc3c(N)ncnc23)C(O)=O"                                                                                                                           
WFH SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@@H](C(=O)O)NP(=O)(O)OC[C@@H]1[C@H]([C@H]([C@@H](O1)n2cnc3c2ncnc3N)O)O"                                                                                                                     
WFH SMILES           "OpenEye OEToolkits" 2.0.7 "CC(C(=O)O)NP(=O)(O)OCC1C(C(C(O1)n2cnc3c2ncnc3N)O)O"                                                                                                                                            
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
WFH "SYSTEMATIC NAME" ACDLabs              12.01 "(2S)-2-{[(R)-{[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxyoxolan-2-yl]methoxy}(hydroxy)phosphoryl]amino}propanoic acid (non-preferred name)" 
WFH "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{S})-2-[[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl]amino]propanoic acid"            
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
WFH "Create component" 2023-10-02 RCSB 
WFH "Initial release"  2024-10-16 RCSB 
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      WFH 
_pdbx_chem_comp_synonyms.name         
;Alanyl-5'-O-adenosine phosphoramidate
;
_pdbx_chem_comp_synonyms.provenance   AUTHOR 
_pdbx_chem_comp_synonyms.type         ? 
# 
