data_JOI
# 
_chem_comp.id                                    JOI 
_chem_comp.name                                  "(2R,4S)-2-[(2S,3R)-1,3-bis(oxidanyl)-1-oxidanylidene-butan-2-yl]-4-[(3S)-1-ethanimidoylpyrrolidin-3-yl]sulfanyl-3,4-dihydro-2H-pyrrole-5-carboxylic acid" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C15 H23 N3 O5 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         "hydrolysed panipenem" 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-05-06 
_chem_comp.pdbx_modified_date                    2023-03-03 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        357.425 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     JOI 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7ZO4 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
JOI C02  C1  C 0 1 N N N 33.348 5.667  18.033 -1.141 -3.199 0.218  C02  JOI 1  
JOI C03  C2  C 0 1 N N N 32.268 4.907  17.329 -1.277 -1.725 0.135  C03  JOI 2  
JOI C04  C3  C 0 1 N N S 31.281 4.137  18.132 -0.215 -0.743 0.578  C04  JOI 3  
JOI C06  C4  C 0 1 N N S 29.229 6.414  18.311 2.366  0.370  0.178  C06  JOI 4  
JOI C07  C5  C 0 1 N N N 27.813 5.895  18.229 3.080  -0.450 1.286  C07  JOI 5  
JOI C08  C6  C 0 1 N N N 27.143 6.399  19.514 4.452  0.264  1.366  C08  JOI 6  
JOI C10  C7  C 0 1 N N N 27.413 8.622  20.811 6.028  0.842  -0.528 C10  JOI 7  
JOI C11  C8  C 0 1 N N N 26.121 8.178  21.460 7.230  0.713  0.371  C11  JOI 8  
JOI C13  C9  C 0 1 N N N 29.097 7.768  19.014 3.517  0.719  -0.789 C13  JOI 9  
JOI C15  C10 C 0 1 N N R 30.718 4.421  15.742 -2.159 0.338  -0.282 C15  JOI 10 
JOI C16  C11 C 0 1 N N N 30.364 3.557  17.024 -0.975 0.602  0.677  C16  JOI 11 
JOI C17  C12 C 0 1 N N S 30.887 3.655  14.366 -3.440 0.982  0.252  C17  JOI 12 
JOI C18  C13 C 0 1 N N N 29.462 3.243  13.890 -4.609 0.555  -0.599 C18  JOI 13 
JOI C21  C14 C 0 1 N N R 31.786 2.370  14.454 -3.304 2.505  0.204  C21  JOI 14 
JOI C23  C15 C 0 1 N N N 32.233 1.970  13.052 -4.585 3.149  0.738  C23  JOI 15 
JOI N09  N1  N 0 1 N N N 27.875 7.668  19.804 4.771  0.627  -0.027 N09  JOI 16 
JOI N12  N2  N 0 1 N N N 28.064 9.694  21.051 6.182  1.157  -1.773 N12  JOI 17 
JOI N14  N3  N 0 1 N N N 31.915 5.203  16.119 -2.301 -1.122 -0.323 N14  JOI 18 
JOI O01  O1  O 0 1 N N N 33.377 5.734  19.294 -2.171 -3.991 -0.136 O01  JOI 19 
JOI O19  O2  O 0 1 N N N 29.115 3.579  12.729 -4.848 1.135  -1.631 O19  JOI 20 
JOI O20  O3  O 0 1 N N N 28.703 2.646  14.685 -5.384 -0.469 -0.209 O20  JOI 21 
JOI O22  O4  O 0 1 N N N 32.981 2.682  15.228 -2.195 2.910  1.010  O22  JOI 22 
JOI O24  O5  O 0 1 N N N 34.138 6.214  17.185 -0.100 -3.692 0.601  O24  JOI 23 
JOI S05  S1  S 0 1 N N N 30.249 5.243  19.330 1.110  -0.637 -0.657 S05  JOI 24 
JOI H041 H2  H 0 0 N N N 31.747 3.344  18.735 0.190  -1.029 1.549  H041 JOI 25 
JOI H061 H3  H 0 0 N N N 29.701 6.505  17.321 1.921  1.275  0.591  H061 JOI 26 
JOI H072 H4  H 0 0 N N N 27.303 6.297  17.341 2.545  -0.377 2.232  H072 JOI 27 
JOI H071 H5  H 0 0 N N N 27.804 4.796  18.191 3.199  -1.491 0.985  H071 JOI 28 
JOI H082 H6  H 0 0 N N N 26.072 6.589  19.352 4.378  1.159  1.984  H082 JOI 29 
JOI H081 H7  H 0 0 N N N 27.267 5.676  20.334 5.209  -0.411 1.765  H081 JOI 30 
JOI H112 H8  H 0 0 N N N 25.811 8.922  22.208 8.135  0.919  -0.200 H112 JOI 31 
JOI H111 H9  H 0 0 N N N 25.339 8.083  20.692 7.148  1.426  1.192  H111 JOI 32 
JOI H113 H10 H 0 0 N N N 26.273 7.206  21.951 7.276  -0.299 0.772  H113 JOI 33 
JOI H132 H11 H 0 0 N N N 29.964 7.951  19.665 3.533  0.011  -1.617 H132 JOI 34 
JOI H131 H12 H 0 0 N N N 29.015 8.580  18.276 3.387  1.733  -1.168 H131 JOI 35 
JOI H151 H13 H 0 0 N N N 29.887 5.128  15.605 -1.926 0.724  -1.275 H151 JOI 36 
JOI H162 H14 H 0 0 N N N 29.304 3.673  17.293 -1.325 0.779  1.694  H162 JOI 37 
JOI H161 H15 H 0 0 N N N 30.584 2.493  16.852 -0.361 1.431  0.326  H161 JOI 38 
JOI H171 H16 H 0 0 N N N 31.325 4.345  13.630 -3.604 0.664  1.281  H171 JOI 39 
JOI H211 H17 H 0 0 N N N 31.215 1.552  14.918 -3.139 2.823  -0.826 H211 JOI 40 
JOI H231 H18 H 0 0 N N N 32.863 1.070  13.110 -4.749 2.831  1.768  H231 JOI 41 
JOI H233 H19 H 0 0 N N N 31.349 1.759  12.432 -4.488 4.234  0.704  H233 JOI 42 
JOI H232 H20 H 0 0 N N N 32.809 2.792  12.602 -5.430 2.840  0.123  H232 JOI 43 
JOI H121 H21 H 0 0 N N N 27.619 10.254 21.750 7.072  1.309  -2.128 H121 JOI 44 
JOI H4   H24 H 0 1 N N N 34.107 6.278  19.566 -2.035 -4.946 -0.065 H4   JOI 45 
JOI H5   H25 H 0 1 N N N 27.860 2.501  14.271 -6.122 -0.706 -0.787 H5   JOI 46 
JOI H221 H26 H 0 0 N N N 32.731 2.935  16.109 -2.274 2.659  1.941  H221 JOI 47 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
JOI O19 C18  DOUB N N 1  
JOI C23 C21  SING N N 2  
JOI C18 C17  SING N N 3  
JOI C18 O20  SING N N 4  
JOI C17 C21  SING N N 5  
JOI C17 C15  SING N N 6  
JOI C21 O22  SING N N 7  
JOI C15 N14  SING N N 8  
JOI C15 C16  SING N N 9  
JOI N14 C03  DOUB N N 10 
JOI C16 C04  SING N N 11 
JOI O24 C02  DOUB N N 12 
JOI C03 C02  SING N N 13 
JOI C03 C04  SING N N 14 
JOI C02 O01  SING N N 15 
JOI C04 S05  SING N N 16 
JOI C07 C06  SING N N 17 
JOI C07 C08  SING N N 18 
JOI C06 C13  SING N N 19 
JOI C06 S05  SING N N 20 
JOI C13 N09  SING N N 21 
JOI C08 N09  SING N N 22 
JOI N09 C10  SING N N 23 
JOI C10 N12  DOUB N N 24 
JOI C10 C11  SING N N 25 
JOI C04 H041 SING N N 26 
JOI C06 H061 SING N N 27 
JOI C07 H072 SING N N 28 
JOI C07 H071 SING N N 29 
JOI C08 H082 SING N N 30 
JOI C08 H081 SING N N 31 
JOI C11 H112 SING N N 32 
JOI C11 H111 SING N N 33 
JOI C11 H113 SING N N 34 
JOI C13 H132 SING N N 35 
JOI C13 H131 SING N N 36 
JOI C15 H151 SING N N 37 
JOI C16 H162 SING N N 38 
JOI C16 H161 SING N N 39 
JOI C17 H171 SING N N 40 
JOI C21 H211 SING N N 41 
JOI C23 H231 SING N N 42 
JOI C23 H233 SING N N 43 
JOI C23 H232 SING N N 44 
JOI N12 H121 SING N N 45 
JOI O01 H4   SING N N 46 
JOI O20 H5   SING N N 47 
JOI O22 H221 SING N N 48 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
JOI InChI            InChI                1.06  "InChI=1S/C15H23N3O5S/c1-7(19)12(14(20)21)10-5-11(13(17-10)15(22)23)24-9-3-4-18(6-9)8(2)16/h7,9-12,16,19H,3-6H2,1-2H3,(H,20,21)(H,22,23)/b16-8+/t7-,9+,10-,11+,12-/m1/s1" 
JOI InChIKey         InChI                1.06  ZWNVBHGNWGLVDB-DXBWQDCPSA-N                                                                                                                                               
JOI SMILES_CANONICAL CACTVS               3.385 "C[C@@H](O)[C@H]([C@H]1C[C@H](S[C@H]2CCN(C2)C(C)=N)C(=N1)C(O)=O)C(O)=O"                                                                                                   
JOI SMILES           CACTVS               3.385 "C[CH](O)[CH]([CH]1C[CH](S[CH]2CCN(C2)C(C)=N)C(=N1)C(O)=O)C(O)=O"                                                                                                         
JOI SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "[H]/N=C(\C)/N1CC[C@@H](C1)S[C@H]2C[C@@H](N=C2C(=O)O)[C@@H]([C@@H](C)O)C(=O)O"                                                                                            
JOI SMILES           "OpenEye OEToolkits" 2.0.7 "CC(C(C1CC(C(=N1)C(=O)O)SC2CCN(C2)C(=N)C)C(=O)O)O"                                                                                                                        
# 
_pdbx_chem_comp_identifier.comp_id           JOI 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "(2~{R},4~{S})-2-[(2~{S},3~{R})-1,3-bis(oxidanyl)-1-oxidanylidene-butan-2-yl]-4-[(3~{S})-1-ethanimidoylpyrrolidin-3-yl]sulfanyl-3,4-dihydro-2~{H}-pyrrole-5-carboxylic acid" 
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      JOI 
_pdbx_chem_comp_synonyms.name         "hydrolysed panipenem" 
_pdbx_chem_comp_synonyms.provenance   AUTHOR 
_pdbx_chem_comp_synonyms.type         ? 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
JOI "Create component"     2022-05-06 PDBE 
JOI "Modify aromatic_flag" 2022-05-06 PDBE 
JOI "Modify descriptor"    2022-08-22 RCSB 
JOI "Initial release"      2023-03-08 RCSB 
# 
