data_PMI
# 
_chem_comp.id                                    PMI 
_chem_comp.name                                  "(2-AMINO-2,3-DIHYDRO-1H-INDEN-2-YL)PHOSPHONIC ACID" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C9 H12 N O3 P" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         "2-AMINOINDAN-2-PHOSPHONIC ACID" 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2006-12-14 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   ? 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        213.170 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     PMI 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        "OpenEye/OEToolkits V1.4.2" 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        2O7E 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
PMI O14    O14    O 0 1 N N N N N N 48.219 -7.639  26.482 -0.283 -7.061 -0.642 O14    PMI 1  
PMI P10    P10    P 0 1 N N N N N N 47.054 -7.175  27.328 0.931  -6.256 -0.352 P10    PMI 2  
PMI O12    O12    O 0 1 N N N N N N 47.310 -7.209  28.810 0.818  -5.197 0.853  O12    PMI 3  
PMI O13    O13    O 0 1 N N N N N N 46.556 -5.809  26.895 2.276  -7.076 -0.029 O13    PMI 4  
PMI "C8'"  "C8'"  C 0 1 N N N N N N 45.695 -8.334  27.014 1.446  -5.204 -1.739 "C8'"  PMI 5  
PMI "C9'"  "C9'"  C 0 1 N N N N N N 46.201 -9.776  27.256 0.349  -4.203 -2.142 "C9'"  PMI 6  
PMI "C2'"  "C2'"  C 0 1 Y N N N N N 45.134 -10.386 28.108 0.749  -3.014 -1.324 "C2'"  PMI 7  
PMI N11    N11    N 0 1 N N N N N N 45.306 -8.151  25.581 1.682  -6.225 -2.742 N11    PMI 8  
PMI "C7'"  "C7'"  C 0 1 N N N N N N 44.513 -8.006  27.977 2.705  -4.385 -1.405 "C7'"  PMI 9  
PMI "C1'"  "C1'"  C 0 1 Y N N N N N 44.137 -9.359  28.518 2.081  -3.116 -0.906 "C1'"  PMI 10 
PMI "C6'"  "C6'"  C 0 1 Y N N N N N 43.045 -9.709  29.329 2.678  -2.107 -0.170 "C6'"  PMI 11 
PMI "C5'"  "C5'"  C 0 1 Y N N N N N 42.911 -11.078 29.706 1.913  -0.986 0.159  "C5'"  PMI 12 
PMI "C4'"  "C4'"  C 0 1 Y N N N N N 43.867 -12.067 29.311 0.577  -0.883 -0.260 "C4'"  PMI 13 
PMI "C3'"  "C3'"  C 0 1 Y N N N N N 44.976 -11.732 28.494 -0.013 -1.900 -1.013 "C3'"  PMI 14 
PMI HO12   HO12   H 0 0 N N N N N N 48.246 -7.216  28.970 0.514  -5.527 1.726  HO12   PMI 15 
PMI HO13   HO13   H 0 0 N N N N N N 46.452 -5.253  27.658 2.240  -7.752 0.681  HO13   PMI 16 
PMI "H9'1" "1H9'" H 0 0 N N N N N N 46.323 -10.324 26.310 -0.652 -4.561 -1.883 "H9'1" PMI 17 
PMI "H9'2" "2H9'" H 0 0 N N N N N N 47.192 -9.804  27.732 0.396  -3.942 -3.206 "H9'2" PMI 18 
PMI H111   1H11   H 0 0 N N N N N N 44.309 -8.110  25.508 1.473  -6.013 -3.698 H111   PMI 19 
PMI H112   2H11   H 0 0 N N N N N N 45.701 -7.300  25.235 1.847  -7.164 -2.438 H112   PMI 20 
PMI "H7'1" "1H7'" H 0 0 N N N N N N 44.819 -7.317  28.778 3.306  -4.166 -2.294 "H7'1" PMI 21 
PMI "H7'2" "2H7'" H 0 0 N N N N N N 43.678 -7.493  27.478 3.321  -4.866 -0.640 "H7'2" PMI 22 
PMI "H6'"  "H6'"  H 0 1 N N N N N N 42.331 -8.967  29.656 3.714  -2.180 0.145  "H6'"  PMI 23 
PMI "H5'"  "H5'"  H 0 1 N N N N N N 42.064 -11.377 30.306 2.357  -0.181 0.739  "H5'"  PMI 24 
PMI "H4'"  "H4'"  H 0 1 N N N N N N 43.741 -13.087 29.641 0.000  0.000  -0.000 "H4'"  PMI 25 
PMI "H3'"  "H3'"  H 0 1 N N N N N N 45.680 -12.487 28.176 -1.042 -1.813 -1.346 "H3'"  PMI 26 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
PMI O14   P10    DOUB N N 1  
PMI P10   O13    SING N N 2  
PMI P10   "C8'"  SING N N 3  
PMI P10   O12    SING N N 4  
PMI O12   HO12   SING N N 5  
PMI O13   HO13   SING N N 6  
PMI "C8'" N11    SING N N 7  
PMI "C8'" "C9'"  SING N N 8  
PMI "C8'" "C7'"  SING N N 9  
PMI "C9'" "C2'"  SING N N 10 
PMI "C9'" "H9'1" SING N N 11 
PMI "C9'" "H9'2" SING N N 12 
PMI "C2'" "C3'"  DOUB Y N 13 
PMI "C2'" "C1'"  SING Y N 14 
PMI N11   H111   SING N N 15 
PMI N11   H112   SING N N 16 
PMI "C7'" "C1'"  SING N N 17 
PMI "C7'" "H7'1" SING N N 18 
PMI "C7'" "H7'2" SING N N 19 
PMI "C1'" "C6'"  DOUB Y N 20 
PMI "C6'" "C5'"  SING Y N 21 
PMI "C6'" "H6'"  SING N N 22 
PMI "C5'" "C4'"  DOUB Y N 23 
PMI "C5'" "H5'"  SING N N 24 
PMI "C4'" "C3'"  SING Y N 25 
PMI "C4'" "H4'"  SING N N 26 
PMI "C3'" "H3'"  SING N N 27 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
PMI SMILES           ACDLabs              10.04 "O=P(O)(O)C2(N)Cc1ccccc1C2"                                                             
PMI SMILES_CANONICAL CACTVS               3.341 "NC1(Cc2ccccc2C1)[P](O)(O)=O"                                                           
PMI SMILES           CACTVS               3.341 "NC1(Cc2ccccc2C1)[P](O)(O)=O"                                                           
PMI SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1ccc2c(c1)CC(C2)(N)P(=O)(O)O"                                                         
PMI SMILES           "OpenEye OEToolkits" 1.5.0 "c1ccc2c(c1)CC(C2)(N)P(=O)(O)O"                                                         
PMI InChI            InChI                1.03  "InChI=1S/C9H12NO3P/c10-9(14(11,12)13)5-7-3-1-2-4-8(7)6-9/h1-4H,5-6,10H2,(H2,11,12,13)" 
PMI InChIKey         InChI                1.03  YJFRDRWPYDVEIH-UHFFFAOYSA-N                                                             
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
PMI "SYSTEMATIC NAME" ACDLabs              10.04 "(2-amino-2,3-dihydro-1H-inden-2-yl)phosphonic acid" 
PMI "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2-amino-1,3-dihydroinden-2-yl)phosphonic acid"     
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
PMI "Create component"  2006-12-14 RCSB 
PMI "Modify descriptor" 2011-06-04 RCSB 
PMI "Modify synonyms"   2020-06-05 PDBE 
PMI "Modify PCM"        2024-09-27 PDBE 
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      PMI 
_pdbx_chem_comp_synonyms.name         "2-AMINOINDAN-2-PHOSPHONIC ACID" 
_pdbx_chem_comp_synonyms.provenance   ? 
_pdbx_chem_comp_synonyms.type         ? 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            PMI 
_pdbx_chem_comp_pcm.modified_residue_id                MDO 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               N11 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   CB2 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
