data_SMI
#

_chem_comp.id                                   SMI
_chem_comp.name                                 SPECTINOMYCIN
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAD
_chem_comp.formula                              "C14 H26 N2 O8"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "(2R,4aR,5aR,6S,7S,8R,9S,9aR,10aS)-2-methyl-6,8-bis(methylamino)hexahydro-2H-pyrano[2,3-b][1,4]benzodioxine-4,4,4a,7,9(3H,10aH)-pentol"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2009-06-30
_chem_comp.pdbx_modified_date                   2021-03-13
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       350.365
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    SMI
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       3I0O
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
SMI  O1    O1    O  0  1  N  N  N  34.560   -6.903  15.733   1.913   1.640  -0.708  O1    SMI   1  
SMI  C2    C2    C  0  1  N  N  R  34.703   -5.801  14.799   3.227   1.327  -1.171  C2    SMI   2  
SMI  C2M   C2M   C  0  1  N  N  N  34.121   -6.222  13.455   3.394   1.824  -2.609  C2M   SMI   3  
SMI  C3    C3    C  0  1  N  N  N  36.220   -5.406  14.653   3.432  -0.190  -1.127  C3    SMI   4  
SMI  C4    C4    C  0  1  N  N  N  36.682   -5.035  16.042   3.214  -0.681   0.307  C4    SMI   5  
SMI  C5    C5    C  0  1  N  N  R  36.550   -6.318  16.830   1.818  -0.269   0.775  C5    SMI   6  
SMI  O5    O5    O  0  1  N  N  N  37.021   -6.009  18.143   1.646  -0.646   2.143  O5    SMI   7  
SMI  C6    C6    C  0  1  N  N  S  35.087   -6.594  17.054   1.656   1.247   0.642  C6    SMI   8  
SMI  O1B   O1B   O  0  1  N  N  N  37.309   -7.406  16.317   0.829  -0.929  -0.020  O1B   SMI   9  
SMI  O2B   O2B   O  0  1  N  N  N  34.835   -7.850  17.710   0.312   1.610   0.984  O2B   SMI  10  
SMI  C7    C7    C  0  1  N  N  R  37.143   -8.522  17.160  -0.507  -0.563   0.331  C7    SMI  11  
SMI  C8    C8    C  0  1  N  N  S  38.014   -9.677  16.629  -1.513  -1.269  -0.578  C8    SMI  12  
SMI  N8    N8    N  0  1  N  N  N  39.409   -9.179  16.627  -1.355  -2.724  -0.448  N8    SMI  13  
SMI  C8M   C8M   C  0  1  N  N  N  40.336  -10.197  16.120  -1.826  -3.414  -1.656  C8M   SMI  14  
SMI  C9    C9    C  0  1  N  N  S  37.844  -10.892  17.596  -2.931  -0.868  -0.163  C9    SMI  15  
SMI  O9    O9    O  0  1  N  N  N  38.266  -10.510  18.917  -3.159  -1.263   1.191  O9    SMI  16  
SMI  C10   C10   C  0  1  N  N  R  36.346  -11.326  17.649  -3.097   0.647  -0.285  C10   SMI  17  
SMI  N10   N10   N  0  1  N  N  N  36.142  -12.366  18.521  -4.455   1.025   0.130  N10   SMI  18  
SMI  C1M   C1M   C  0  1  N  N  N  36.886  -13.580  18.164  -5.406   0.871  -0.978  C1M   SMI  19  
SMI  C11   C11   C  0  1  N  N  S  35.502  -10.140  18.115  -2.076   1.355   0.610  C11   SMI  20  
SMI  O11   O11   O  0  1  N  N  N  34.151  -10.539  18.135  -2.229   2.770   0.483  O11   SMI  21  
SMI  C12   C12   C  0  1  N  N  R  35.660   -8.939  17.198  -0.667   0.952   0.176  C12   SMI  22  
SMI  O4A   O4A   O  0  1  N  N  N  38.042   -4.595  16.128   3.330  -2.105   0.347  O4A   SMI  23  
SMI  O4B   O4B   O  0  1  N  N  N  35.859   -3.958  16.245   4.198  -0.098   1.165  O4B   SMI  24  
SMI  H2    H2    H  0  1  N  N  N  34.160   -4.920  15.171   3.964   1.812  -0.531  H2    SMI  25  
SMI  H2M   H2M   H  0  1  N  N  N  33.029   -6.323  13.543   3.245   2.904  -2.640  H2M   SMI  26  
SMI  H2MA  H2MA  H  0  0  N  N  N  34.358   -5.460  12.698   4.397   1.585  -2.962  H2MA  SMI  27  
SMI  H2MB  H2MB  H  0  0  N  N  N  34.555   -7.187  13.154   2.658   1.338  -3.249  H2MB  SMI  28  
SMI  H3    H3    H  0  1  N  N  N  36.806   -6.250  14.260   2.715  -0.674  -1.791  H3    SMI  29  
SMI  H3A   H3A   H  0  1  N  N  N  36.355   -4.574  13.947   4.446  -0.431  -1.446  H3A   SMI  30  
SMI  HO5   HO5   H  0  1  N  N  N  37.968   -5.940  18.132   0.781  -0.415   2.509  HO5   SMI  31  
SMI  H6    H6    H  0  1  N  N  N  34.678   -5.744  17.620   2.357   1.750   1.309  H6    SMI  32  
SMI  H7    H7    H  0  1  N  N  N  37.454   -8.268  18.184  -0.700  -0.844   1.367  H7    SMI  33  
SMI  H8    H8    H  0  1  N  N  N  37.732  -10.001  15.616  -1.338  -0.973  -1.613  H8    SMI  34  
SMI  HN8   HN8   H  0  1  N  N  N  39.463   -8.371  16.041  -0.398  -2.967  -0.242  HN8   SMI  35  
SMI  H8M   H8M   H  0  1  N  N  N  40.568   -9.990  15.065  -1.698  -4.489  -1.533  H8M   SMI  36  
SMI  H8MA  H8MA  H  0  0  N  N  N  41.264  -10.174  16.711  -2.881  -3.189  -1.815  H8MA  SMI  37  
SMI  H8MB  H8MB  H  0  0  N  N  N  39.871  -11.190  16.204  -1.249  -3.075  -2.516  H8MB  SMI  38  
SMI  H9    H9    H  0  1  N  N  N  38.455  -11.731  17.231  -3.652  -1.365  -0.811  H9    SMI  39  
SMI  HO9   HO9   H  0  1  N  N  N  39.212  -10.426  18.936  -4.040  -1.041   1.523  HO9   SMI  40  
SMI  H10   H10   H  0  1  N  N  N  36.058  -11.656  16.640  -2.940   0.947  -1.321  H10   SMI  41  
SMI  HN10  HN10  H  0  0  N  N  N  36.439  -12.074  19.430  -4.748   0.491   0.935  HN10  SMI  42  
SMI  H1M   H1M   H  0  1  N  N  N  37.072  -13.591  17.080  -6.386   1.236  -0.670  H1M   SMI  43  
SMI  H1MA  H1MA  H  0  0  N  N  N  37.846  -13.593  18.701  -5.059   1.444  -1.838  H1MA  SMI  44  
SMI  H1MB  H1MB  H  0  0  N  N  N  36.297  -14.466  18.444  -5.480  -0.182  -1.250  H1MB  SMI  45  
SMI  H11   H11   H  0  1  N  N  N  35.841   -9.839  19.117  -2.237   1.063   1.648  H11   SMI  46  
SMI  HO11  HO11  H  0  0  N  N  N  33.860  -10.629  19.035  -3.072   3.106   0.816  HO11  SMI  47  
SMI  H12   H12   H  0  1  N  N  N  35.338   -9.188  16.176  -0.519   1.228  -0.868  H12   SMI  48  
SMI  HO4A  HO4A  H  0  0  N  N  N  38.400   -4.498  15.253   4.191  -2.438   0.059  HO4A  SMI  49  
SMI  HO4B  HO4B  H  0  0  N  N  N  35.669   -3.875  17.172   5.109  -0.316   0.924  HO4B  SMI  50  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
SMI  C2   O1    SING  N  N   1  
SMI  O1   C6    SING  N  N   2  
SMI  C2M  C2    SING  N  N   3  
SMI  C3   C2    SING  N  N   4  
SMI  C2   H2    SING  N  N   5  
SMI  C2M  H2M   SING  N  N   6  
SMI  C2M  H2MA  SING  N  N   7  
SMI  C2M  H2MB  SING  N  N   8  
SMI  C3   C4    SING  N  N   9  
SMI  C3   H3    SING  N  N  10  
SMI  C3   H3A   SING  N  N  11  
SMI  C4   O4A   SING  N  N  12  
SMI  C4   O4B   SING  N  N  13  
SMI  C4   C5    SING  N  N  14  
SMI  O1B  C5    SING  N  N  15  
SMI  C5   C6    SING  N  N  16  
SMI  C5   O5    SING  N  N  17  
SMI  O5   HO5   SING  N  N  18  
SMI  C6   O2B   SING  N  N  19  
SMI  C6   H6    SING  N  N  20  
SMI  O1B  C7    SING  N  N  21  
SMI  C12  O2B   SING  N  N  22  
SMI  C8   C7    SING  N  N  23  
SMI  C7   C12   SING  N  N  24  
SMI  C7   H7    SING  N  N  25  
SMI  N8   C8    SING  N  N  26  
SMI  C8   C9    SING  N  N  27  
SMI  C8   H8    SING  N  N  28  
SMI  C8M  N8    SING  N  N  29  
SMI  N8   HN8   SING  N  N  30  
SMI  C8M  H8M   SING  N  N  31  
SMI  C8M  H8MA  SING  N  N  32  
SMI  C8M  H8MB  SING  N  N  33  
SMI  C9   C10   SING  N  N  34  
SMI  C9   O9    SING  N  N  35  
SMI  C9   H9    SING  N  N  36  
SMI  O9   HO9   SING  N  N  37  
SMI  C10  C11   SING  N  N  38  
SMI  C10  N10   SING  N  N  39  
SMI  C10  H10   SING  N  N  40  
SMI  C1M  N10   SING  N  N  41  
SMI  N10  HN10  SING  N  N  42  
SMI  C1M  H1M   SING  N  N  43  
SMI  C1M  H1MA  SING  N  N  44  
SMI  C1M  H1MB  SING  N  N  45  
SMI  C12  C11   SING  N  N  46  
SMI  C11  O11   SING  N  N  47  
SMI  C11  H11   SING  N  N  48  
SMI  O11  HO11  SING  N  N  49  
SMI  C12  H12   SING  N  N  50  
SMI  O4A  HO4A  SING  N  N  51  
SMI  O4B  HO4B  SING  N  N  52  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
SMI  SMILES            ACDLabs               10.04  "O1C3C(OC2(O)C1OC(C)CC2(O)O)C(NC)C(O)C(NC)C3O"  
SMI  SMILES_CANONICAL  CACTVS                3.341  "CN[C@@H]1[C@H](O)[C@H](NC)[C@H]2O[C@]3(O)[C@@H](O[C@H](C)CC3(O)O)O[C@@H]2[C@H]1O"  
SMI  SMILES            CACTVS                3.341  "CN[CH]1[CH](O)[CH](NC)[CH]2O[C]3(O)[CH](O[CH](C)CC3(O)O)O[CH]2[CH]1O"  
SMI  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "C[C@@H]1CC([C@]2([C@@H](O1)O[C@@H]3[C@H]([C@@H]([C@@H]([C@@H]([C@H]3O2)NC)O)NC)O)O)(O)O"  
SMI  SMILES            "OpenEye OEToolkits"  1.5.0  "CC1CC(C2(C(O1)OC3C(C(C(C(C3O2)NC)O)NC)O)O)(O)O"  
SMI  InChI             InChI                 1.03   "InChI=1S/C14H26N2O8/c1-5-4-13(19,20)14(21)12(22-5)23-11-9(18)6(15-2)8(17)7(16-3)10(11)24-14/h5-12,15-21H,4H2,1-3H3/t5-,6-,7+,8+,9+,10-,11-,12+,14-/m1/s1"  
SMI  InChIKey          InChI                 1.03   JEBSYFSDBYNEEU-GOZOPVAMSA-N  
#
_pdbx_chem_comp_identifier.comp_id          SMI
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          ACDLabs
_pdbx_chem_comp_identifier.program_version  10.04
_pdbx_chem_comp_identifier.identifier       "(2R,4aR,5aR,6S,7S,8R,9S,9aR,10aS)-2-methyl-6,8-bis(methylamino)hexahydro-2H-pyrano[2,3-b][1,4]benzodioxine-4,4,4a,7,9(3H,10aH)-pentol"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
SMI  "Create component"   2009-06-30  RCSB  
SMI  "Modify descriptor"  2011-06-04  RCSB  
SMI  "Modify synonyms"    2021-03-13  RCSB  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     SMI
_pdbx_chem_comp_synonyms.name        "(2R,4aR,5aR,6S,7S,8R,9S,9aR,10aS)-2-methyl-6,8-bis(methylamino)hexahydro-2H-pyrano[2,3-b][1,4]benzodioxine-4,4,4a,7,9(3H,10aH)-pentol"
_pdbx_chem_comp_synonyms.provenance  PDB
_pdbx_chem_comp_synonyms.type        ?
##
