data_ARJ
#

_chem_comp.id                                   ARJ
_chem_comp.name                                 "(2S,3R,5R)-3-(6-amino-9H-purin-9-yl)-2-hydroxy-5-(hydroxymethyl)cyclopentanone"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C11 H13 N5 O3"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "3'-keto-aristeromycin"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2008-03-05
_chem_comp.pdbx_modified_date                   2021-03-01
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       263.253
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    ARJ
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       2ZJ1
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
ARJ  C2      C2      C  0  1  Y  N  N  53.123  -13.256  44.705   3.496  -1.457  -1.200  C2      ARJ   1  
ARJ  C4      C4      C  0  1  Y  N  N  52.540  -11.160  43.710   1.759  -0.234  -0.323  C4      ARJ   2  
ARJ  C5      C5      C  0  1  Y  N  N  51.287  -11.612  43.413   2.687   0.618   0.299  C5      ARJ   3  
ARJ  C6      C6      C  0  1  Y  N  N  50.924  -12.851  43.769   4.056   0.355   0.115  C6      ARJ   4  
ARJ  "O2'"   "O2'"   O  0  1  N  N  N  55.277   -9.181  41.378  -1.275  -2.028   1.279  "O2'"   ARJ   5  
ARJ  "C2'"   "C2'"   C  0  1  N  N  S  54.340   -8.382  42.118  -1.618  -0.713   0.840  "C2'"   ARJ   6  
ARJ  C3D     C3D     C  0  1  N  N  N  55.120   -7.384  42.693  -3.052  -0.678   0.341  C3D     ARJ   7  
ARJ  O3D     O3D     O  0  1  N  N  N  56.067   -6.913  42.082  -3.988  -1.279   0.810  O3D     ARJ   8  
ARJ  "C4'"   "C4'"   C  0  1  N  N  R  54.880   -7.243  44.054  -3.091   0.252  -0.854  "C4'"   ARJ   9  
ARJ  "C6'"   "C6'"   C  0  1  N  N  N  54.920   -5.820  44.726  -4.029   1.427  -0.573  "C6'"   ARJ  10  
ARJ  "O6'"   "O6'"   O  0  1  N  N  N  55.602   -6.050  46.041  -5.372   0.949  -0.466  "O6'"   ARJ  11  
ARJ  "C5'"   "C5'"   C  0  1  N  N  N  53.560   -7.926  44.281  -1.652   0.766  -1.068  "C5'"   ARJ  12  
ARJ  "C1'"   "C1'"   C  0  1  N  N  R  53.873   -9.125  43.391  -0.770  -0.316  -0.394  "C1'"   ARJ  13  
ARJ  N9      N9      N  0  1  Y  N  N  52.658   -9.924  43.223   0.519   0.245   0.018  N9      ARJ  14  
ARJ  C8      C8      C  0  1  Y  N  N  51.459   -9.561  42.731   0.707   1.337   0.811  C8      ARJ  15  
ARJ  N7      N7      N  0  1  Y  N  N  50.643  -10.606  42.806   1.980   1.555   0.975  N7      ARJ  16  
ARJ  N3      N3      N  0  1  Y  N  N  53.421  -11.947  44.342   2.204  -1.249  -1.056  N3      ARJ  17  
ARJ  N1      N1      N  0  1  Y  N  N  51.809  -13.674  44.395   4.405  -0.684  -0.636  N1      ARJ  18  
ARJ  N6      N6      N  0  1  N  N  N  49.675  -13.252  43.441   5.016   1.160   0.702  N6      ARJ  19  
ARJ  H2      H2      H  0  1  N  N  N  53.841  -13.903  45.187   3.824  -2.294  -1.799  H2      ARJ  20  
ARJ  "HO2'"  "HO2'"  H  0  0  N  N  N  54.929   -9.357  40.512  -1.812  -2.350   2.016  "HO2'"  ARJ  21  
ARJ  "H2'"   "H2'"   H  0  1  N  N  N  53.509   -8.091  41.459  -1.478   0.006   1.647  "H2'"   ARJ  22  
ARJ  "H4'"   "H4'"   H  0  1  N  N  N  55.746   -7.687  44.566  -3.428  -0.291  -1.737  "H4'"   ARJ  23  
ARJ  "H6'"   "H6'"   H  0  1  N  N  N  55.479   -5.103  44.107  -3.740   1.908   0.362  "H6'"   ARJ  24  
ARJ  "H6A'"  "H6A'"  H  0  0  N  N  N  53.916   -5.386  44.846  -3.964   2.148  -1.388  "H6A'"  ARJ  25  
ARJ  "HO6'"  "HO6'"  H  0  0  N  N  N  56.541   -6.099  45.907  -6.023   1.641  -0.288  "HO6'"  ARJ  26  
ARJ  "H5'"   "H5'"   H  0  1  N  N  N  53.350   -8.178  45.331  -1.424   0.838  -2.131  "H5'"   ARJ  27  
ARJ  "H5A'"  "H5A'"  H  0  0  N  N  N  52.648   -7.353  44.056  -1.513   1.731  -0.580  "H5A'"  ARJ  28  
ARJ  "H1'"   "H1'"   H  0  1  N  N  N  54.615   -9.854  43.750  -0.628  -1.169  -1.058  "H1'"   ARJ  29  
ARJ  H8      H8      H  0  1  N  N  N  51.204   -8.586  42.342  -0.084   1.935   1.241  H8      ARJ  30  
ARJ  HN6     HN6     H  0  1  N  N  N  49.127  -13.351  44.272   4.748   1.916   1.248  HN6     ARJ  31  
ARJ  HN6A    HN6A    H  0  0  N  N  N  49.253  -12.571  42.843   5.958   0.968   0.568  HN6A    ARJ  32  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
ARJ  C2     N3      DOUB  Y  N   1  
ARJ  C2     N1      SING  Y  N   2  
ARJ  C4     C5      DOUB  Y  N   3  
ARJ  C4     N9      SING  Y  N   4  
ARJ  C4     N3      SING  Y  N   5  
ARJ  C5     C6      SING  Y  N   6  
ARJ  C5     N7      SING  Y  N   7  
ARJ  C6     N1      DOUB  Y  N   8  
ARJ  C6     N6      SING  N  N   9  
ARJ  "O2'"  "C2'"   SING  N  N  10  
ARJ  "C2'"  C3D     SING  N  N  11  
ARJ  "C2'"  "C1'"   SING  N  N  12  
ARJ  C3D    O3D     DOUB  N  N  13  
ARJ  C3D    "C4'"   SING  N  N  14  
ARJ  "C4'"  "C6'"   SING  N  N  15  
ARJ  "C4'"  "C5'"   SING  N  N  16  
ARJ  "C6'"  "O6'"   SING  N  N  17  
ARJ  "C5'"  "C1'"   SING  N  N  18  
ARJ  "C1'"  N9      SING  N  N  19  
ARJ  N9     C8      SING  Y  N  20  
ARJ  C8     N7      DOUB  Y  N  21  
ARJ  C2     H2      SING  N  N  22  
ARJ  "O2'"  "HO2'"  SING  N  N  23  
ARJ  "C2'"  "H2'"   SING  N  N  24  
ARJ  "C4'"  "H4'"   SING  N  N  25  
ARJ  "C6'"  "H6'"   SING  N  N  26  
ARJ  "C6'"  "H6A'"  SING  N  N  27  
ARJ  "O6'"  "HO6'"  SING  N  N  28  
ARJ  "C5'"  "H5'"   SING  N  N  29  
ARJ  "C5'"  "H5A'"  SING  N  N  30  
ARJ  "C1'"  "H1'"   SING  N  N  31  
ARJ  C8     H8      SING  N  N  32  
ARJ  N6     HN6     SING  N  N  33  
ARJ  N6     HN6A    SING  N  N  34  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
ARJ  SMILES            ACDLabs               10.04  "O=C3C(O)C(n1c2ncnc(c2nc1)N)CC3CO"  
ARJ  SMILES_CANONICAL  CACTVS                3.341  "Nc1ncnc2n(cnc12)[C@@H]3C[C@H](CO)C(=O)[C@H]3O"  
ARJ  SMILES            CACTVS                3.341  "Nc1ncnc2n(cnc12)[CH]3C[CH](CO)C(=O)[CH]3O"  
ARJ  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "c1nc(c2c(n1)n(cn2)[C@@H]3C[C@@H](C(=O)[C@H]3O)CO)N"  
ARJ  SMILES            "OpenEye OEToolkits"  1.5.0  "c1nc(c2c(n1)n(cn2)C3CC(C(=O)C3O)CO)N"  
ARJ  InChI             InChI                 1.03   "InChI=1S/C11H13N5O3/c12-10-7-11(14-3-13-10)16(4-15-7)6-1-5(2-17)8(18)9(6)19/h3-6,9,17,19H,1-2H2,(H2,12,13,14)/t5-,6-,9+/m1/s1"  
ARJ  InChIKey          InChI                 1.03   CWNCBQJCRSRXGI-KCRUCZTKSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
ARJ  "SYSTEMATIC NAME"  ACDLabs               10.04  "(2S,3R,5R)-3-(6-amino-9H-purin-9-yl)-2-hydroxy-5-(hydroxymethyl)cyclopentanone"  
ARJ  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.5.0  "(2S,3R,5R)-3-(6-aminopurin-9-yl)-2-hydroxy-5-(hydroxymethyl)cyclopentan-1-one"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
ARJ  "Create component"      2008-03-05  RCSB  
ARJ  "Modify aromatic_flag"  2011-06-04  RCSB  
ARJ  "Modify descriptor"     2011-06-04  RCSB  
ARJ  "Modify synonyms"       2021-03-01  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     ARJ
_pdbx_chem_comp_synonyms.name        "3'-keto-aristeromycin"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
