data_MDJ
# 
_chem_comp.id                                    MDJ 
_chem_comp.name                                  "4-amino-1-(2-deoxy-5-O-phosphono-beta-D-erythro-pentofuranosyl)-3-(hydroxymethyl)pyridin-2(1H)-one" 
_chem_comp.type                                  "DNA linking" 
_chem_comp.pdbx_type                             ATOMN 
_chem_comp.formula                               "C11 H17 N2 O8 P" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2010-07-23 
_chem_comp.pdbx_modified_date                    2011-06-04 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        336.235 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     MDJ 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        3O1V 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
MDJ P      P    P 0 1 N N N 0.777  0.578  -1.169 -4.546 1.144  -0.038 P    MDJ 1  
MDJ N1     N1   N 0 1 N N N 0.141  -1.543 3.492  1.968  -0.435 0.039  N1   MDJ 2  
MDJ C2     C2   C 0 1 N N N -0.539 -2.289 4.435  3.088  -0.153 -0.653 C2   MDJ 3  
MDJ O2     O2   O 0 1 N N N 0.103  -2.977 5.267  3.167  -0.456 -1.833 O2   MDJ 4  
MDJ C3     C3   C 0 1 N N N -1.961 -2.309 4.490  4.161  0.484  -0.023 C3   MDJ 5  
MDJ C4     C4   C 0 1 N N N -2.669 -1.512 3.558  4.053  0.820  1.317  C4   MDJ 6  
MDJ N4     N4   N 0 1 N N N -4.072 -1.506 3.508  5.096  1.452  1.969  N4   MDJ 7  
MDJ C5     C5   C 0 1 N N N -1.970 -0.713 2.642  2.861  0.506  2.006  C5   MDJ 8  
MDJ C6     C6   C 0 1 N N N -0.568 -0.739 2.639  1.853  -0.109 1.354  C6   MDJ 9  
MDJ "C1'"  C1*  C 0 1 N N R 1.597  -1.631 3.383  0.851  -1.098 -0.639 C1*  MDJ 10 
MDJ O1P    O1P  O 0 1 N N N 1.434  1.689  -1.955 -5.805 0.153  0.124  O1P  MDJ 11 
MDJ "C2'"  C2*  C 0 1 N N N 2.060  -3.024 2.883  0.626  -2.497 -0.033 C2*  MDJ 12 
MDJ C20    C20  C 0 1 N N N -2.717 -3.147 5.466  5.418  0.802  -0.791 C20  MDJ 13 
MDJ O21    O21  O 0 1 N N N -3.496 -2.324 6.329  5.097  1.638  -1.905 O21  MDJ 14 
MDJ O2P    O2P  O 0 1 N N N -0.399 1.109  -0.450 -4.281 1.819  1.252  O2P  MDJ 15 
MDJ "C3'"  C3*  C 0 1 N N S 3.217  -2.723 1.924  -0.837 -2.461 0.472  C3*  MDJ 16 
MDJ "O3'"  O3*  O 0 1 N N N 4.466  -2.771 2.611  -1.505 -3.691 0.188  O3*  MDJ 17 
MDJ "C4'"  C4*  C 0 1 N N R 2.899  -1.293 1.442  -1.439 -1.299 -0.360 C4*  MDJ 18 
MDJ "O4'"  O4*  O 0 1 N N N 2.225  -0.648 2.532  -0.358 -0.346 -0.439 O4*  MDJ 19 
MDJ "C5'"  C5*  C 0 1 N N N 2.027  -1.240 0.158  -2.644 -0.689 0.360  C5*  MDJ 20 
MDJ "O5'"  O5*  O 0 1 N N N 1.789  0.036  -0.169 -3.249 0.298  -0.477 O5*  MDJ 21 
MDJ HN4    HN4  H 0 1 N N N -4.378 -0.883 2.788  5.872  1.750  1.469  HN4  MDJ 22 
MDJ HN4A   HN4A H 0 0 N N N -4.402 -2.429 3.313  5.052  1.597  2.927  HN4A MDJ 23 
MDJ H5     H5   H 0 1 N N N -2.506 -0.084 1.946  2.757  0.759  3.050  H5   MDJ 24 
MDJ H6     H6   H 0 1 N N N -0.032 -0.108 1.945  0.943  -0.347 1.884  H6   MDJ 25 
MDJ "H1'"  H1*  H 0 1 N N N 1.920  -1.437 4.416  1.063  -1.185 -1.705 H1*  MDJ 26 
MDJ "H2'"  H2*  H 0 1 N N N 2.392  -3.656 3.720  0.748  -3.266 -0.795 H2*  MDJ 27 
MDJ "H2'A" H2*A H 0 0 N N N 1.244  -3.552 2.368  1.312  -2.668 0.797  H2*A MDJ 28 
MDJ H20    H20  H 0 1 N N N -3.384 -3.827 4.917  6.121  1.320  -0.139 H20  MDJ 29 
MDJ H20A   H20A H 0 0 N N N -2.005 -3.730 6.069  5.868  -0.123 -1.150 H20A MDJ 30 
MDJ HO21   HO21 H 0 0 N N N -3.971 -2.870 6.944  5.860  1.883  -2.445 HO21 MDJ 31 
MDJ "H3'"  H3*  H 0 1 N N N 3.306  -3.446 1.100  -0.875 -2.237 1.538  H3*  MDJ 32 
MDJ "HO3'" HO3* H 0 0 N N N 5.170  -2.582 2.002  -1.108 -4.463 0.615  HO3* MDJ 33 
MDJ "H4'"  H4*  H 0 1 N N N 3.836  -0.789 1.163  -1.720 -1.645 -1.355 H4*  MDJ 34 
MDJ "H5'"  H5*  H 0 1 N N N 2.559  -1.736 -0.667 -3.369 -1.472 0.582  H5*  MDJ 35 
MDJ "H5'A" H5*A H 0 0 N N N 1.073  -1.755 0.342  -2.315 -0.225 1.290  H5*A MDJ 36 
MDJ O8     O8   O 0 1 N N N 0.340  -0.506 -2.126 -4.873 2.248  -1.163 O8   MDJ 37 
MDJ H16    H16  H 0 1 N N N 0.954  2.498  -1.823 -6.036 -0.324 -0.685 H16  MDJ 38 
MDJ H17    H17  H 0 1 N N N -0.601 -0.621 -2.067 -5.644 2.796  -0.964 H17  MDJ 39 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
MDJ P     O1P    SING N N 1  
MDJ P     O2P    DOUB N N 2  
MDJ P     "O5'"  SING N N 3  
MDJ N1    C2     SING N N 4  
MDJ N1    C6     SING N N 5  
MDJ N1    "C1'"  SING N N 6  
MDJ C2    O2     DOUB N N 7  
MDJ C2    C3     SING N N 8  
MDJ C3    C4     DOUB N N 9  
MDJ C3    C20    SING N N 10 
MDJ C4    N4     SING N N 11 
MDJ C4    C5     SING N N 12 
MDJ N4    HN4    SING N N 13 
MDJ N4    HN4A   SING N N 14 
MDJ C5    C6     DOUB N N 15 
MDJ C5    H5     SING N N 16 
MDJ C6    H6     SING N N 17 
MDJ "C1'" "C2'"  SING N N 18 
MDJ "C1'" "O4'"  SING N N 19 
MDJ "C1'" "H1'"  SING N N 20 
MDJ "C2'" "C3'"  SING N N 21 
MDJ "C2'" "H2'"  SING N N 22 
MDJ "C2'" "H2'A" SING N N 23 
MDJ C20   O21    SING N N 24 
MDJ C20   H20    SING N N 25 
MDJ C20   H20A   SING N N 26 
MDJ O21   HO21   SING N N 27 
MDJ "C3'" "O3'"  SING N N 28 
MDJ "C3'" "C4'"  SING N N 29 
MDJ "C3'" "H3'"  SING N N 30 
MDJ "O3'" "HO3'" SING N N 31 
MDJ "C4'" "O4'"  SING N N 32 
MDJ "C4'" "C5'"  SING N N 33 
MDJ "C4'" "H4'"  SING N N 34 
MDJ "C5'" "O5'"  SING N N 35 
MDJ "C5'" "H5'"  SING N N 36 
MDJ "C5'" "H5'A" SING N N 37 
MDJ O8    P      SING N N 38 
MDJ O1P   H16    SING N N 39 
MDJ O8    H17    SING N N 40 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
MDJ SMILES           ACDLabs              12.01 "O=P(O)(O)OCC2OC(N1C(=O)C(=C(N)C=C1)CO)CC2O"                                                                                                   
MDJ SMILES_CANONICAL CACTVS               3.370 "NC1=C(CO)C(=O)N(C=C1)[C@H]2C[C@H](O)[C@@H](CO[P](O)(O)=O)O2"                                                                                  
MDJ SMILES           CACTVS               3.370 "NC1=C(CO)C(=O)N(C=C1)[CH]2C[CH](O)[CH](CO[P](O)(O)=O)O2"                                                                                      
MDJ SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "C1[C@@H]([C@H](O[C@H]1N2C=CC(=C(C2=O)CO)N)COP(=O)(O)O)O"                                                                                      
MDJ SMILES           "OpenEye OEToolkits" 1.7.0 "C1C(C(OC1N2C=CC(=C(C2=O)CO)N)COP(=O)(O)O)O"                                                                                                   
MDJ InChI            InChI                1.03  "InChI=1S/C11H17N2O8P/c12-7-1-2-13(11(16)6(7)4-14)10-3-8(15)9(21-10)5-20-22(17,18)19/h1-2,8-10,14-15H,3-5,12H2,(H2,17,18,19)/t8-,9+,10+/m0/s1" 
MDJ InChIKey         InChI                1.03  FIHVBWHWCWOFPJ-IVZWLZJFSA-N                                                                                                                    
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
MDJ "SYSTEMATIC NAME" ACDLabs              12.01 "4-amino-1-(2-deoxy-5-O-phosphono-beta-D-erythro-pentofuranosyl)-3-(hydroxymethyl)pyridin-2(1H)-one"              
MDJ "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.0 "[(2R,3S,5R)-5-[4-azanyl-3-(hydroxymethyl)-2-oxo-pyridin-1-yl]-3-hydroxy-oxolan-2-yl]methyl dihydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
MDJ "Create component"  2010-07-23 RCSB 
MDJ "Modify descriptor" 2011-06-04 RCSB 
# 
