data_78K
# 
_chem_comp.id                                    78K 
_chem_comp.name                                  "(2~{R})-4-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl-[[4-azanyl-1-(methoxymethyl)-2-oxidanylidene-pyrimidin-5-yl]methyl]amino]-2-azanyl-butanoic acid" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C21 H30 N10 O7" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2016-09-12 
_chem_comp.pdbx_modified_date                    2017-09-15 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        534.526 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     78K 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5LV4 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
78K C11 C1  C 0 1 N N N 23.430 -8.747  4.168  2.829  -1.316 1.184  C11 78K 1  
78K C21 C2  C 0 1 N N N 22.375 -13.086 6.438  -0.129 -5.464 -0.193 C21 78K 2  
78K C12 C3  C 0 1 N N N 24.247 -7.700  3.493  3.917  -0.595 0.431  C12 78K 3  
78K C13 C4  C 0 1 N N N 25.477 -7.959  2.766  4.348  -1.065 -0.826 C13 78K 4  
78K C14 C5  C 0 1 N N N 25.872 -5.659  2.499  5.859  0.678  -0.955 C14 78K 5  
78K C15 C6  C 0 1 N N N 23.891 -6.410  3.618  4.491  0.516  0.948  C15 78K 6  
78K C16 C7  C 0 1 N N N 24.236 -4.031  3.528  6.103  2.352  0.794  C16 78K 7  
78K C17 C8  C 0 1 N N N 22.216 -3.876  2.252  4.324  3.942  0.565  C17 78K 8  
78K C1  C9  C 0 1 Y N N 17.993 -9.922  -4.460 -6.968 0.661  -0.082 C1  78K 9  
78K C2  C10 C 0 1 Y N N 19.001 -9.507  -3.578 -5.633 0.503  0.326  C2  78K 10 
78K C3  C11 C 0 1 Y N N 19.648 -10.489 -2.850 -4.629 1.131  -0.431 C3  78K 11 
78K N1  N1  N 0 1 Y N N 19.414 -11.799 -2.895 -4.976 1.846  -1.496 N1  78K 12 
78K C4  C12 C 0 1 Y N N 18.438 -12.082 -3.760 -6.240 1.967  -1.840 C4  78K 13 
78K N2  N2  N 0 1 Y N N 17.725 -11.246 -4.525 -7.218 1.396  -1.161 N2  78K 14 
78K N3  N3  N 0 1 Y N N 20.571 -9.837  -2.074 -3.442 0.816  0.180  N3  78K 15 
78K C5  C13 C 0 1 Y N N 20.428 -8.508  -2.368 -3.732 0.032  1.257  C5  78K 16 
78K N4  N4  N 0 1 Y N N 19.503 -8.252  -3.258 -5.018 -0.151 1.341  N4  78K 17 
78K C6  C14 C 0 1 N N R 21.480 -10.438 -1.109 -2.107 1.243  -0.246 C6  78K 18 
78K O1  O1  O 0 1 N N N 21.051 -10.066 0.175  -1.104 0.329  0.248  O1  78K 19 
78K C7  C15 C 0 1 N N R 22.148 -10.400 1.062  0.135  1.070  0.216  C7  78K 20 
78K C8  C16 C 0 1 N N S 23.434 -10.269 0.230  -0.241 2.488  0.703  C8  78K 21 
78K C9  C17 C 0 1 N N R 22.920 -9.965  -1.189 -1.749 2.604  0.391  C9  78K 22 
78K O2  O2  O 0 1 N N N 23.641 -10.677 -2.182 -1.990 3.668  -0.532 O2  78K 23 
78K O3  O3  O 0 1 N N N 24.221 -11.462 0.306  0.497  3.476  -0.019 O3  78K 24 
78K C10 C18 C 0 1 N N N 22.086 -9.512  2.267  1.158  0.437  1.161  C10 78K 25 
78K N5  N5  N 0 1 N N N 23.127 -9.902  3.270  1.518  -0.899 0.669  N5  78K 26 
78K N6  N6  N 0 1 N N N 17.310 -9.091  -5.251 -7.999 0.062  0.620  N6  78K 27 
78K N7  N7  N 0 1 N N N 26.231 -6.959  2.298  5.304  -0.414 -1.477 N7  78K 28 
78K N8  N8  N 0 1 N N N 24.668 -5.386  3.154  5.473  1.148  0.246  N8  78K 29 
78K N9  N9  N 0 1 N N N 25.884 -9.210  2.553  3.782  -2.192 -1.375 N9  78K 30 
78K O4  O4  O 0 1 N N N 23.528 -3.372  2.514  5.605  3.503  0.110  O4  78K 31 
78K O5  O5  O 0 1 N N N 26.607 -4.713  2.185  6.733  1.262  -1.575 O5  78K 32 
78K C18 C19 C 0 1 N N N 22.818 -11.158 4.027  0.481  -1.883 1.010  C18 78K 33 
78K C19 C20 C 0 1 N N N 21.605 -11.017 4.937  0.715  -3.168 0.214  C19 78K 34 
78K C20 C21 C 0 1 N N R 21.406 -11.910 6.118  -0.421 -4.154 0.493  C20 78K 35 
78K N10 N10 N 0 1 N N N 19.988 -12.176 6.418  -1.683 -3.605 -0.019 N10 78K 36 
78K O6  O6  O 0 1 N N N 22.003 -13.484 7.614  0.723  -6.339 0.366  O6  78K 37 
78K O7  O7  O 0 1 N N N 23.368 -13.451 5.863  -0.661 -5.727 -1.245 O7  78K 38 
78K H12 H1  H 0 1 N N N 22.482 -8.297  4.497  2.946  -2.391 1.053  H12 78K 39 
78K H11 H2  H 0 1 N N N 23.984 -9.117  5.044  2.897  -1.070 2.244  H11 78K 40 
78K H15 H3  H 0 1 N N N 22.956 -6.174  4.103  4.175  0.899  1.908  H15 78K 41 
78K H19 H4  H 0 1 N N N 25.128 -3.436  3.773  5.871  2.432  1.856  H19 78K 42 
78K H18 H5  H 0 1 N N N 23.589 -4.104  4.414  7.183  2.289  0.662  H18 78K 43 
78K H21 H6  H 0 1 N N N 21.752 -3.291  1.444  3.595  3.144  0.424  H21 78K 44 
78K H22 H7  H 0 1 N N N 22.283 -4.931  1.949  4.382  4.197  1.624  H22 78K 45 
78K H20 H8  H 0 1 N N N 21.603 -3.794  3.162  4.017  4.819  -0.003 H20 78K 46 
78K H1  H9  H 0 1 N N N 18.189 -13.129 -3.856 -6.487 2.556  -2.712 H1  78K 47 
78K H2  H10 H 0 1 N N N 21.027 -7.737  -1.906 -3.002 -0.379 1.939  H2  78K 48 
78K H3  H11 H 0 1 N N N 21.461 -11.533 -1.216 -2.059 1.307  -1.333 H3  78K 49 
78K H4  H12 H 0 1 N N N 22.051 -11.446 1.387  0.529  1.108  -0.799 H4  78K 50 
78K H5  H13 H 0 1 N N N 24.009 -9.405  0.594  -0.061 2.585  1.773  H5  78K 51 
78K H6  H14 H 0 1 N N N 22.950 -8.880  -1.370 -2.318 2.758  1.308  H6  78K 52 
78K H7  H15 H 0 1 N N N 24.537 -10.362 -2.211 -1.782 4.546  -0.184 H7  78K 53 
78K H8  H16 H 0 1 N N N 24.508 -11.596 1.202  0.301  4.385  0.246  H8  78K 54 
78K H10 H17 H 0 1 N N N 22.257 -8.471  1.957  2.051  1.062  1.201  H10 78K 55 
78K H9  H18 H 0 1 N N N 21.091 -9.599  2.728  0.729  0.353  2.159  H9  78K 56 
78K H14 H20 H 0 1 N N N 16.663 -9.614  -5.805 -7.804 -0.475 1.404  H14 78K 57 
78K H13 H21 H 0 1 N N N 16.810 -8.432  -4.689 -8.917 0.179  0.329  H13 78K 58 
78K H16 H22 H 0 1 N N N 26.734 -9.381  2.054  3.084  -2.666 -0.897 H16 78K 59 
78K H17 H23 H 0 1 N N N 25.340 -9.977  2.892  4.081  -2.513 -2.241 H17 78K 60 
78K H24 H24 H 0 1 N N N 22.623 -11.964 3.305  0.526  -2.102 2.077  H24 78K 61 
78K H23 H25 H 0 1 N N N 23.691 -11.420 4.643  -0.500 -1.476 0.765  H23 78K 62 
78K H25 H26 H 0 1 N N N 21.627 -9.988  5.326  0.742  -2.936 -0.850 H25 78K 63 
78K H26 H27 H 0 1 N N N 20.720 -11.148 4.297  1.664  -3.613 0.513  H26 78K 64 
78K H27 H28 H 0 1 N N N 21.662 -11.221 6.936  -0.505 -4.318 1.567  H27 78K 65 
78K H28 H29 H 0 1 N N N 19.922 -12.777 7.215  -1.934 -2.759 0.471  H28 78K 66 
78K H29 H30 H 0 1 N N N 19.521 -11.313 6.612  -1.631 -3.444 -1.014 H29 78K 67 
78K H30 H32 H 0 1 N N N 22.635 -14.108 7.952  0.878  -7.165 -0.112 H30 78K 68 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
78K N6  C1  SING N N 1  
78K N2  C1  DOUB Y N 2  
78K N2  C4  SING Y N 3  
78K C1  C2  SING Y N 4  
78K C4  N1  DOUB Y N 5  
78K C2  N4  SING Y N 6  
78K C2  C3  DOUB Y N 7  
78K N4  C5  DOUB Y N 8  
78K N1  C3  SING Y N 9  
78K C3  N3  SING Y N 10 
78K C5  N3  SING Y N 11 
78K O2  C9  SING N N 12 
78K N3  C6  SING N N 13 
78K C9  C6  SING N N 14 
78K C9  C8  SING N N 15 
78K C6  O1  SING N N 16 
78K O1  C7  SING N N 17 
78K C8  O3  SING N N 18 
78K C8  C7  SING N N 19 
78K C7  C10 SING N N 20 
78K O5  C14 DOUB N N 21 
78K C17 O4  SING N N 22 
78K C10 N5  SING N N 23 
78K N7  C14 SING N N 24 
78K N7  C13 DOUB N N 25 
78K C14 N8  SING N N 26 
78K O4  C16 SING N N 27 
78K N9  C13 SING N N 28 
78K C13 C12 SING N N 29 
78K N8  C16 SING N N 30 
78K N8  C15 SING N N 31 
78K N5  C18 SING N N 32 
78K N5  C11 SING N N 33 
78K C12 C15 DOUB N N 34 
78K C12 C11 SING N N 35 
78K C18 C19 SING N N 36 
78K C19 C20 SING N N 37 
78K O7  C21 DOUB N N 38 
78K C20 N10 SING N N 39 
78K C20 C21 SING N N 40 
78K C21 O6  SING N N 41 
78K C11 H12 SING N N 42 
78K C11 H11 SING N N 43 
78K C15 H15 SING N N 44 
78K C16 H19 SING N N 45 
78K C16 H18 SING N N 46 
78K C17 H21 SING N N 47 
78K C17 H22 SING N N 48 
78K C17 H20 SING N N 49 
78K C4  H1  SING N N 50 
78K C5  H2  SING N N 51 
78K C6  H3  SING N N 52 
78K C7  H4  SING N N 53 
78K C8  H5  SING N N 54 
78K C9  H6  SING N N 55 
78K O2  H7  SING N N 56 
78K O3  H8  SING N N 57 
78K C10 H10 SING N N 58 
78K C10 H9  SING N N 59 
78K N6  H14 SING N N 60 
78K N6  H13 SING N N 61 
78K N9  H16 SING N N 62 
78K N9  H17 SING N N 63 
78K C18 H24 SING N N 64 
78K C18 H23 SING N N 65 
78K C19 H25 SING N N 66 
78K C19 H26 SING N N 67 
78K C20 H27 SING N N 68 
78K N10 H28 SING N N 69 
78K N10 H29 SING N N 70 
78K O6  H30 SING N N 71 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
78K InChI            InChI                1.03  
"InChI=1S/C21H30N10O7/c1-37-9-30-5-10(16(23)28-21(30)36)4-29(3-2-11(22)20(34)35)6-12-14(32)15(33)19(38-12)31-8-27-13-17(24)25-7-26-18(13)31/h5,7-8,11-12,14-15,19,32-33H,2-4,6,9,22H2,1H3,(H,34,35)(H2,23,28,36)(H2,24,25,26)/t11-,12-,14-,15-,19-/m1/s1" 
78K InChIKey         InChI                1.03  UCWJYOSDGSOMTM-FSVZYJJUSA-N 
78K SMILES_CANONICAL CACTVS               3.385 "COCN1C=C(CN(CC[C@@H](N)C(O)=O)C[C@H]2O[C@H]([C@H](O)[C@@H]2O)n3cnc4c(N)ncnc34)C(=NC1=O)N" 
78K SMILES           CACTVS               3.385 "COCN1C=C(CN(CC[CH](N)C(O)=O)C[CH]2O[CH]([CH](O)[CH]2O)n3cnc4c(N)ncnc34)C(=NC1=O)N" 
78K SMILES_CANONICAL "OpenEye OEToolkits" 2.0.5 "COCN1C=C(C(=NC1=O)N)CN(CC[C@H](C(=O)O)N)C[C@@H]2[C@H]([C@H]([C@@H](O2)n3cnc4c3ncnc4N)O)O" 
78K SMILES           "OpenEye OEToolkits" 2.0.5 "COCN1C=C(C(=NC1=O)N)CN(CCC(C(=O)O)N)CC2C(C(C(O2)n3cnc4c3ncnc4N)O)O" 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
78K "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.5 "(2~{R})-4-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl-[[4-azanyl-1-(methoxymethyl)-2-oxidanylidene-pyrimidin-5-yl]methyl]amino]-2-azanyl-butanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
78K "Create component" 2016-09-12 EBI  
78K "Initial release"  2017-09-20 RCSB 
# 
