data_A1ALK
# 
_chem_comp.id                                    A1ALK 
_chem_comp.name                                  "N~2~-[4-(5-chloropyridin-3-yl)benzoyl]-N-{(1Z,2S)-1-imino-3-[(3R)-2-oxopyrrolidin-3-yl]propan-2-yl}-L-leucinamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C25 H30 Cl N5 O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2024-04-09 
_chem_comp.pdbx_modified_date                    2025-04-11 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        483.990 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     A1ALK 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        9BBU 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
A1ALK C13  C1  C  0 1 N N S N N N -16.318 1.889  1.851  -5.839 1.645  -0.241 C13  A1ALK 1  
A1ALK C17  C2  C  0 1 N N N N N N -15.664 2.866  0.866  -5.350 2.914  0.495  C17  A1ALK 2  
A1ALK C22  C3  C  0 1 Y N N N N N -20.003 6.415  2.129  1.993  -0.393 -0.524 C22  A1ALK 3  
A1ALK C24  C4  C  0 1 Y N N N N N -18.786 8.479  2.727  3.673  -0.070 1.161  C24  A1ALK 4  
A1ALK C26  C5  C  0 1 Y N N N N N -19.825 10.821 2.952  6.053  0.320  0.531  C26  A1ALK 5  
A1ALK C28  C6  C  0 1 Y N N N N N -18.799 12.798 4.008  8.336  0.701  -0.063 C28  A1ALK 6  
A1ALK C02  C7  C  0 1 N N N N N N -20.025 4.910  1.839  0.583  -0.641 -0.891 C02  A1ALK 7  
A1ALK C04  C8  C  0 1 N N S N N N -20.883 2.877  0.419  -1.727 -1.122 -0.285 C04  A1ALK 8  
A1ALK C05  C9  C  0 1 N N N N N N -22.013 2.700  -0.659 -1.867 -2.644 -0.351 C05  A1ALK 9  
A1ALK C06  C10 C  0 1 N N N N N N -23.478 3.032  -0.217 -3.257 -3.007 -0.877 C06  A1ALK 10 
A1ALK C07  C11 C  0 1 N N N N N N -24.497 2.795  -1.342 -3.387 -2.549 -2.331 C07  A1ALK 11 
A1ALK C08  C12 C  0 1 N N N N N N -23.892 2.222  1.030  -3.452 -4.522 -0.800 C08  A1ALK 12 
A1ALK C09  C13 C  0 1 N N N N N N -19.471 2.320  -0.027 -2.671 -0.575 0.755  C09  A1ALK 13 
A1ALK C11  C14 C  0 1 N N S N N N -17.567 0.566  -0.014 -4.901 0.091  1.476  C11  A1ALK 14 
A1ALK C12  C15 C  0 1 N N N N N N -16.502 0.554  1.098  -6.177 0.540  0.762  C12  A1ALK 15 
A1ALK C14  C16 C  0 1 N N N N N N -15.375 1.943  3.050  -7.084 2.097  -0.972 C14  A1ALK 16 
A1ALK C16  C17 C  0 1 N N N N N N -14.335 3.358  1.502  -5.954 4.036  -0.377 C16  A1ALK 17 
A1ALK C19  C18 C  0 1 N N N N N N -17.685 -0.852 -0.617 -5.251 -0.904 2.553  C19  A1ALK 18 
A1ALK C23  C19 C  0 1 Y N N N N N -18.820 7.092  2.470  2.359  -0.301 0.821  C23  A1ALK 19 
A1ALK C25  C20 C  0 1 Y N N N N N -19.916 9.323  2.666  4.638  0.072  0.163  C25  A1ALK 20 
A1ALK C27  C21 C  0 1 Y N N N N N -18.846 11.419 3.778  7.028  0.470  -0.459 C27  A1ALK 21 
A1ALK C29  C22 C  0 1 Y N N N N N -19.734 13.655 3.420  8.631  0.776  1.288  C29  A1ALK 22 
A1ALK C31  C23 C  0 1 Y N N N N N -20.720 11.783 2.405  6.431  0.414  1.870  C31  A1ALK 23 
A1ALK C33  C24 C  0 1 Y N N N N N -21.092 8.622  2.314  4.274  -0.026 -1.180 C33  A1ALK 24 
A1ALK C34  C25 C  0 1 Y N N N N N -21.133 7.234  2.056  2.961  -0.257 -1.522 C34  A1ALK 25 
A1ALK N03  N1  N  0 1 N N N N N N -20.777 4.303  0.805  -0.350 -0.772 0.072  N03  A1ALK 26 
A1ALK N10  N2  N  0 1 N N N N N N -18.900 1.095  0.386  -3.995 -0.535 0.509  N10  A1ALK 27 
A1ALK N15  N3  N  0 1 N N N N N N -14.291 2.766  2.835  -7.125 3.439  -1.028 N15  A1ALK 28 
A1ALK N20  N4  N  0 1 N N N N N N -17.059 -1.291 -1.637 -4.765 -2.086 2.514  N20  A1ALK 29 
A1ALK N30  N5  N  0 1 Y N N N N N -20.689 13.124 2.619  7.687  0.635  2.198  N30  A1ALK 30 
A1ALK O01  O1  O  0 1 N N N N N N -19.337 4.190  2.546  0.265  -0.726 -2.061 O01  A1ALK 31 
A1ALK O18  O2  O  0 1 N N N N N N -15.537 1.333  4.122  -7.922 1.355  -1.439 O18  A1ALK 32 
A1ALK O21  O3  O  0 1 N N N N N N -18.811 3.033  -0.792 -2.238 -0.172 1.814  O21  A1ALK 33 
A1ALK CL32 CL1 CL 0 0 N N N N N N -17.581 13.528 5.036  9.590  0.894  -1.247 CL32 A1ALK 34 
A1ALK H131 H1  H  0 0 N N N N N N -17.305 2.276  2.145  -5.084 1.299  -0.947 H131 A1ALK 35 
A1ALK H171 H2  H  0 0 N N N N N N -16.333 3.721  0.686  -5.746 2.952  1.510  H171 A1ALK 36 
A1ALK H172 H3  H  0 0 N N N N N N -15.457 2.356  -0.086 -4.261 2.967  0.501  H172 A1ALK 37 
A1ALK H241 H4  H  0 0 N N N N N N -17.836 8.923  2.987  3.957  0.001  2.201  H241 A1ALK 38 
A1ALK H041 H5  H  0 0 N N N N N N -21.189 2.303  1.306  -1.971 -0.693 -1.257 H041 A1ALK 39 
A1ALK H051 H6  H  0 0 N N N N N N -21.996 1.650  -0.988 -1.108 -3.050 -1.019 H051 A1ALK 40 
A1ALK H052 H7  H  0 0 N N N N N N -21.767 3.354  -1.508 -1.735 -3.064 0.646  H052 A1ALK 41 
A1ALK H061 H8  H  0 0 N N N N N N -23.510 4.099  0.049  -4.016 -2.512 -0.271 H061 A1ALK 42 
A1ALK H072 H9  H  0 0 N N N N N N -25.506 3.042  -0.981 -2.670 -3.090 -2.948 H072 A1ALK 43 
A1ALK H071 H10 H  0 0 N N N N N N -24.249 3.434  -2.202 -4.398 -2.751 -2.686 H071 A1ALK 44 
A1ALK H073 H11 H  0 0 N N N N N N -24.466 1.739  -1.649 -3.187 -1.479 -2.394 H073 A1ALK 45 
A1ALK H082 H12 H  0 0 N N N N N N -24.924 2.481  1.310  -3.359 -4.849 0.236  H082 A1ALK 46 
A1ALK H083 H13 H  0 0 N N N N N N -23.832 1.147  0.805  -4.442 -4.781 -1.175 H083 A1ALK 47 
A1ALK H081 H14 H  0 0 N N N N N N -23.215 2.461  1.863  -2.693 -5.017 -1.406 H081 A1ALK 48 
A1ALK H111 H15 H  0 0 N N N N N N -17.183 1.217  -0.813 -4.412 0.955  1.925  H111 A1ALK 49 
A1ALK H122 H16 H  0 0 N N N N N N -15.538 0.286  0.642  -6.889 0.921  1.495  H122 A1ALK 50 
A1ALK H121 H17 H  0 0 N N N N N N -16.787 -0.214 1.833  -6.617 -0.307 0.235  H121 A1ALK 51 
A1ALK H161 H18 H  0 0 N N N N N N -14.326 4.456  1.570  -6.257 4.877  0.247  H161 A1ALK 52 
A1ALK H162 H19 H  0 0 N N N N N N -13.476 3.020  0.904  -5.231 4.363  -1.125 H162 A1ALK 53 
A1ALK H191 H20 H  0 0 N N N N N N -18.362 -1.536 -0.128 -5.913 -0.618 3.357  H191 A1ALK 54 
A1ALK H231 H21 H  0 0 N N N N N N -17.901 6.529  2.538  1.612  -0.410 1.593  H231 A1ALK 55 
A1ALK H271 H22 H  0 0 N N N N N N -18.107 10.788 4.249  6.769  0.408  -1.505 H271 A1ALK 56 
A1ALK H291 H23 H  0 0 N N N N N N -19.696 14.719 3.601  9.649  0.955  1.600  H291 A1ALK 57 
A1ALK H311 H24 H  0 0 N N N N N N -21.499 11.411 1.757  5.686  0.305  2.645  H311 A1ALK 58 
A1ALK H331 H25 H  0 0 N N N N N N -22.013 9.181  2.238  5.023  0.079  -1.951 H331 A1ALK 59 
A1ALK H341 H26 H  0 0 N N N N N N -22.079 6.786  1.791  2.679  -0.333 -2.562 H341 A1ALK 60 
A1ALK H031 H27 H  0 0 N N N N N N -21.320 4.933  0.250  -0.111 -0.636 1.002  H031 A1ALK 61 
A1ALK H101 H28 H  0 0 N N N N N N -19.443 0.529  1.006  -4.349 -0.920 -0.308 H101 A1ALK 62 
A1ALK H151 H29 H  0 0 N N N N N N -13.568 2.935  3.505  -7.838 3.947  -1.446 H151 A1ALK 63 
A1ALK H201 H30 H  0 0 N N N N N N -17.296 -2.241 -1.842 -4.990 -2.727 3.207  H201 A1ALK 64 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
A1ALK C02  O01  DOUB N N 1  
A1ALK C04  N03  SING N N 2  
A1ALK C06  C05  SING N N 3  
A1ALK C07  C06  SING N N 4  
A1ALK C08  C06  SING N N 5  
A1ALK C05  C04  SING N N 6  
A1ALK C09  C04  SING N N 7  
A1ALK C11  N10  SING N N 8  
A1ALK C13  C12  SING N N 9  
A1ALK C14  C13  SING N N 10 
A1ALK C16  N15  SING N N 11 
A1ALK C17  C16  SING N N 12 
A1ALK N15  C14  SING N N 13 
A1ALK O18  C14  DOUB N N 14 
A1ALK C12  C11  SING N N 15 
A1ALK C19  C11  SING N N 16 
A1ALK N20  C19  DOUB N N 17 
A1ALK N10  C09  SING N N 18 
A1ALK O21  C09  DOUB N N 19 
A1ALK N03  C02  SING N N 20 
A1ALK C22  C02  SING N N 21 
A1ALK C23  C22  DOUB Y N 22 
A1ALK C24  C23  SING Y N 23 
A1ALK C25  C24  DOUB Y N 24 
A1ALK C27  C26  DOUB Y N 25 
A1ALK C28  C27  SING Y N 26 
A1ALK N30  C29  SING Y N 27 
A1ALK C31  N30  DOUB Y N 28 
A1ALK C29  C28  DOUB Y N 29 
A1ALK CL32 C28  SING N N 30 
A1ALK C26  C25  SING N N 31 
A1ALK C33  C25  SING Y N 32 
A1ALK C34  C33  DOUB Y N 33 
A1ALK C13  C17  SING N N 34 
A1ALK C22  C34  SING Y N 35 
A1ALK C26  C31  SING Y N 36 
A1ALK C13  H131 SING N N 37 
A1ALK C17  H171 SING N N 38 
A1ALK C17  H172 SING N N 39 
A1ALK C24  H241 SING N N 40 
A1ALK C04  H041 SING N N 41 
A1ALK C05  H051 SING N N 42 
A1ALK C05  H052 SING N N 43 
A1ALK C06  H061 SING N N 44 
A1ALK C07  H072 SING N N 45 
A1ALK C07  H071 SING N N 46 
A1ALK C07  H073 SING N N 47 
A1ALK C08  H082 SING N N 48 
A1ALK C08  H083 SING N N 49 
A1ALK C08  H081 SING N N 50 
A1ALK C11  H111 SING N N 51 
A1ALK C12  H122 SING N N 52 
A1ALK C12  H121 SING N N 53 
A1ALK C16  H161 SING N N 54 
A1ALK C16  H162 SING N N 55 
A1ALK C19  H191 SING N N 56 
A1ALK C23  H231 SING N N 57 
A1ALK C27  H271 SING N N 58 
A1ALK C29  H291 SING N N 59 
A1ALK C31  H311 SING N N 60 
A1ALK C33  H331 SING N N 61 
A1ALK C34  H341 SING N N 62 
A1ALK N03  H031 SING N N 63 
A1ALK N10  H101 SING N N 64 
A1ALK N15  H151 SING N N 65 
A1ALK N20  H201 SING N N 66 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
A1ALK SMILES           ACDLabs              12.01 "Clc1cc(cnc1)c1ccc(cc1)C(=O)NC(CC(C)C)C(=O)NC(CC1CCNC1=O)C=N"                                                                                                                                                                   
A1ALK InChI            InChI                1.06  "InChI=1S/C25H30ClN5O3/c1-15(2)9-22(25(34)30-21(12-27)11-18-7-8-29-23(18)32)31-24(33)17-5-3-16(4-6-17)19-10-20(26)14-28-13-19/h3-6,10,12-15,18,21-22,27H,7-9,11H2,1-2H3,(H,29,32)(H,30,34)(H,31,33)/b27-12+/t18-,21+,22+/m1/s1" 
A1ALK InChIKey         InChI                1.06  UXWHDTJOXYLLFG-CUEBCNBESA-N                                                                                                                                                                                                     
A1ALK SMILES_CANONICAL CACTVS               3.385 "CC(C)C[C@H](NC(=O)c1ccc(cc1)c2cncc(Cl)c2)C(=O)N[C@@H](C[C@@H]3CCNC3=O)C=N"                                                                                                                                                     
A1ALK SMILES           CACTVS               3.385 "CC(C)C[CH](NC(=O)c1ccc(cc1)c2cncc(Cl)c2)C(=O)N[CH](C[CH]3CCNC3=O)C=N"                                                                                                                                                          
A1ALK SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)C[C@@H](C(=O)N[C@@H](C[C@@H]1CCNC1=O)C=N)NC(=O)c2ccc(cc2)c3cc(cnc3)Cl"                                                                                                                                                    
A1ALK SMILES           "OpenEye OEToolkits" 2.0.7 "CC(C)CC(C(=O)NC(CC1CCNC1=O)C=N)NC(=O)c2ccc(cc2)c3cc(cnc3)Cl"                                                                                                                                                                   
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
A1ALK "SYSTEMATIC NAME" ACDLabs              12.01 "N~2~-[4-(5-chloropyridin-3-yl)benzoyl]-N-{(1Z,2S)-1-imino-3-[(3R)-2-oxopyrrolidin-3-yl]propan-2-yl}-L-leucinamide"                                                               
A1ALK "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "~{N}-[(2~{S})-1-[[(2~{S})-1-azanylidene-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]amino]-4-methyl-1-oxidanylidene-pentan-2-yl]-4-(5-chloranylpyridin-3-yl)benzamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
A1ALK "Create component" 2024-04-09 RCSB 
A1ALK "Modify PCM"       2024-09-27 PDBE 
A1ALK "Initial release"  2025-04-16 RCSB 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            A1ALK 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C19 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
