data_D8K
# 
_chem_comp.id                                    D8K 
_chem_comp.name                                  "~{N}-[(5~{S},8~{S},11~{S},15~{R})-8-[(4-fluorophenyl)methyl]-5-(hydroxymethyl)-2,7,10,14-tetrakis(oxidanylidene)-1,6,9,13-tetrazabicyclo[13.3.0]octadecan-11-yl]-5-methyl-1,2-oxazole-3-carboxamide" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C27 H33 F N6 O7" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2018-01-09 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        572.585 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     D8K 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        6FFN 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
D8K C2  C1  C 0 1 N N S N N N -28.115 4.694  0.157  2.477  0.741  1.060  C2  D8K 1  
D8K C3  C2  C 0 1 N N N N N N -28.113 5.575  1.429  3.459  1.769  0.493  C3  D8K 2  
D8K C12 C3  C 0 1 N N S N N N -26.175 6.528  -2.669 -0.875 1.397  2.753  C12 D8K 3  
D8K C13 C4  C 0 1 N N N N N N -26.145 8.044  -2.823 -0.938 1.082  4.251  C13 D8K 4  
D8K C14 C5  C 0 1 N N N N N N -26.264 5.845  -4.072 -2.159 0.914  2.072  C14 D8K 5  
D8K C15 C6  C 0 1 N N N N N N -25.581 4.468  -3.965 -3.095 2.097  1.822  C15 D8K 6  
D8K C16 C7  C 0 1 Y N N N N N -29.419 5.553  2.222  4.657  1.057  -0.080 C16 D8K 7  
D8K C17 C8  C 0 1 Y N N N N N -29.329 5.371  3.616  4.659  0.666  -1.406 C17 D8K 8  
D8K C18 C9  C 0 1 Y N N N N N -30.490 5.326  4.395  5.758  0.013  -1.933 C18 D8K 9  
D8K C19 C10 C 0 1 Y N N N N N -31.742 5.477  3.781  6.856  -0.250 -1.132 C19 D8K 10 
D8K C20 C11 C 0 1 Y N N N N N -31.824 5.681  2.397  6.853  0.142  0.196  C20 D8K 11 
D8K C21 C12 C 0 1 Y N N N N N -30.662 5.712  1.608  5.755  0.800  0.719  C21 D8K 12 
D8K C23 C13 C 0 1 N N N N N N -25.695 3.562  -5.165 -3.066 2.463  0.359  C23 D8K 13 
D8K C26 C14 C 0 1 N N N N N N -29.400 -0.643 -0.774 -0.149 -2.506 -0.689 C26 D8K 14 
D8K C27 C15 C 0 1 Y N N N N N -30.276 -1.369 -1.721 -1.070 -3.441 0.003  C27 D8K 15 
D8K N1  N1  N 0 1 N N N N N N -27.891 3.260  0.318  1.933  -0.107 -0.021 N1  D8K 16 
D8K C4  C16 C 0 1 N N N N N N -27.840 2.332  -0.684 0.994  0.450  -0.836 C4  D8K 17 
D8K O5  O1  O 0 1 N N N N N N -28.045 2.656  -1.850 0.721  1.628  -0.758 O5  D8K 18 
D8K C6  C17 C 0 1 N N S N N N -27.478 0.881  -0.440 0.296  -0.412 -1.855 C6  D8K 19 
D8K N7  N2  N 0 1 N N N N N N -28.374 0.095  -1.278 -0.614 -1.336 -1.171 N7  D8K 20 
D8K C8  C18 C 0 1 N N N N N N -25.965 0.651  -0.836 -0.493 0.459  -2.831 C8  D8K 21 
D8K C9  C19 C 0 1 N N N N N N -27.026 5.187  -0.758 1.326  1.439  1.742  C9  D8K 22 
D8K N10 N3  N 0 1 N N N N N N -27.256 6.037  -1.791 0.266  0.682  2.144  N10 D8K 23 
D8K O11 O2  O 0 1 N N N N N N -25.887 4.770  -0.468 1.346  2.638  1.920  O11 D8K 24 
D8K N22 N4  N 0 1 N N N N N N -25.598 1.068  -2.239 -1.517 1.235  -2.102 N22 D8K 25 
D8K O24 O3  O 0 1 N N N N N N -26.469 3.857  -6.116 -2.265 3.283  -0.040 O24 D8K 26 
D8K F25 F1  F 0 1 N N N N N N -32.858 5.427  4.508  7.930  -0.888 -1.645 F25 D8K 27 
D8K O28 O4  O 0 1 N N N N N N -29.657 -0.752 0.422  1.023  -2.795 -0.822 O28 D8K 28 
D8K N29 N5  N 0 1 Y N N N N N -30.037 -1.448 -2.980 -2.351 -3.271 0.215  N29 D8K 29 
D8K O30 O5  O 0 1 Y N N N N N -31.115 -2.210 -3.528 -2.830 -4.213 0.802  O30 D8K 30 
D8K C31 C20 C 0 1 Y N N N N N -31.936 -2.481 -2.517 -1.914 -5.155 1.064  C31 D8K 31 
D8K C32 C21 C 0 1 Y N N N N N -31.541 -2.009 -1.345 -0.740 -4.706 0.564  C32 D8K 32 
D8K C33 C22 C 0 1 N N N N N N -33.196 -3.254 -2.786 -2.147 -6.462 1.778  C33 D8K 33 
D8K C34 C23 C 0 1 N N N N N N -24.418 1.713  -2.595 -2.810 1.072  -2.508 C34 D8K 34 
D8K O35 O6  O 0 1 N N N N N N -23.565 2.019  -1.765 -3.102 0.209  -3.308 O35 D8K 35 
D8K C36 C24 C 0 1 N N R N N N -23.967 2.158  -3.996 -3.868 1.996  -1.963 C36 D8K 36 
D8K C37 C25 C 0 1 N N N N N N -23.010 1.151  -4.689 -5.243 1.612  -2.514 C37 D8K 37 
D8K C38 C26 C 0 1 N N N N N N -23.956 0.385  -5.637 -6.008 0.966  -1.350 C38 D8K 38 
D8K C39 C27 C 0 1 N N N N N N -24.901 1.476  -6.202 -5.078 1.061  -0.135 C39 D8K 39 
D8K N40 N6  N 0 1 N N N N N N -24.909 2.447  -5.118 -3.932 1.891  -0.501 N40 D8K 40 
D8K O41 O7  O 0 1 N N N N N N -26.104 8.680  -1.541 0.223  1.607  4.898  O41 D8K 41 
D8K H1  H1  H 0 1 N N N N N N -29.080 4.844  -0.349 2.998  0.112  1.788  H1  D8K 42 
D8K H2  H2  H 0 1 N N N N N N -27.306 5.223  2.088  2.969  2.345  -0.292 H2  D8K 43 
D8K H3  H3  H 0 1 N N N N N N -27.913 6.614  1.126  3.782  2.441  1.288  H3  D8K 44 
D8K H4  H4  H 0 1 N N N N N N -25.215 6.224  -2.226 -0.762 2.470  2.608  H4  D8K 45 
D8K H5  H5  H 0 1 N N N N N N -25.252 8.331  -3.398 -1.830 1.539  4.681  H5  D8K 46 
D8K H6  H6  H 0 1 N N N N N N -27.048 8.371  -3.360 -0.978 0.003  4.394  H6  D8K 47 
D8K H7  H7  H 0 1 N N N N N N -25.748 6.462  -4.823 -1.908 0.445  1.120  H7  D8K 48 
D8K H8  H8  H 0 1 N N N N N N -27.318 5.719  -4.362 -2.658 0.186  2.714  H8  D8K 49 
D8K H9  H9  H 0 1 N N N N N N -26.024 3.942  -3.106 -4.110 1.822  2.108  H9  D8K 50 
D8K H10 H10 H 0 1 N N N N N N -24.511 4.640  -3.777 -2.770 2.952  2.414  H10 D8K 51 
D8K H11 H11 H 0 1 N N N N N N -28.362 5.266  4.084  3.802  0.870  -2.031 H11 D8K 52 
D8K H12 H12 H 0 1 N N N N N N -30.423 5.176  5.462  5.759  -0.293 -2.969 H12 D8K 53 
D8K H13 H13 H 0 1 N N N N N N -32.790 5.816  1.932  7.709  -0.062 0.822  H13 D8K 54 
D8K H14 H14 H 0 1 N N N N N N -30.730 5.857  0.540  5.754  1.109  1.754  H14 D8K 55 
D8K H15 H15 H 0 1 N N N N N N -27.763 2.925  1.251  2.231  -1.027 -0.146 H15 D8K 56 
D8K H16 H16 H 0 1 N N N N N N -27.615 0.632  0.623  1.043  -0.986 -2.408 H16 D8K 57 
D8K H17 H17 H 0 1 N N N N N N -28.228 0.098  -2.267 -1.550 -1.105 -1.065 H17 D8K 58 
D8K H18 H18 H 0 1 N N N N N N -25.745 -0.422 -0.731 0.188  1.147  -3.336 H18 D8K 59 
D8K H19 H19 H 0 1 N N N N N N -25.339 1.224  -0.136 -0.973 -0.176 -3.578 H19 D8K 60 
D8K H20 H20 H 0 1 N N N N N N -28.192 6.342  -1.964 0.262  -0.285 2.036  H20 D8K 61 
D8K H21 H21 H 0 1 N N N N N N -26.252 0.865  -2.968 -1.289 1.834  -1.373 H21 D8K 62 
D8K H22 H22 H 0 1 N N N N N N -32.018 -2.077 -0.379 0.222  -5.195 0.583  H22 D8K 63 
D8K H23 H23 H 0 1 N N N N N N -33.255 -3.498 -3.857 -3.197 -6.540 2.062  H23 D8K 64 
D8K H24 H24 H 0 1 N N N N N N -33.188 -4.184 -2.198 -1.887 -7.289 1.117  H24 D8K 65 
D8K H25 H25 H 0 1 N N N N N N -34.067 -2.646 -2.500 -1.525 -6.503 2.673  H25 D8K 66 
D8K H26 H26 H 0 1 N N N N N N -23.376 3.074  -3.845 -3.628 3.025  -2.244 H26 D8K 67 
D8K H27 H27 H 0 1 N N N N N N -22.548 0.473  -3.956 -5.769 2.504  -2.859 H27 D8K 68 
D8K H28 H28 H 0 1 N N N N N N -22.223 1.674  -5.251 -5.140 0.904  -3.335 H28 D8K 69 
D8K H29 H29 H 0 1 N N N N N N -24.527 -0.377 -5.086 -6.931 1.513  -1.161 H29 D8K 70 
D8K H30 H30 H 0 1 N N N N N N -23.389 -0.097 -6.447 -6.229 -0.077 -1.577 H30 D8K 71 
D8K H31 H31 H 0 1 N N N N N N -24.501 1.913  -7.129 -5.614 1.520  0.697  H31 D8K 72 
D8K H32 H32 H 0 1 N N N N N N -25.908 1.076  -6.390 -4.741 0.066  0.152  H32 D8K 73 
D8K H33 H33 H 0 1 N N N N N N -26.086 9.623  -1.655 0.250  1.444  5.850  H33 D8K 74 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
D8K C39 C38 SING N N 1  
D8K C39 N40 SING N N 2  
D8K O24 C23 DOUB N N 3  
D8K C38 C37 SING N N 4  
D8K C23 N40 SING N N 5  
D8K C23 C15 SING N N 6  
D8K N40 C36 SING N N 7  
D8K C37 C36 SING N N 8  
D8K C14 C15 SING N N 9  
D8K C14 C12 SING N N 10 
D8K C36 C34 SING N N 11 
D8K O30 N29 SING Y N 12 
D8K O30 C31 SING Y N 13 
D8K N29 C27 DOUB Y N 14 
D8K C13 C12 SING N N 15 
D8K C13 O41 SING N N 16 
D8K C33 C31 SING N N 17 
D8K C12 N10 SING N N 18 
D8K C34 N22 SING N N 19 
D8K C34 O35 DOUB N N 20 
D8K C31 C32 DOUB Y N 21 
D8K N22 C8  SING N N 22 
D8K O5  C4  DOUB N N 23 
D8K N10 C9  SING N N 24 
D8K C27 C32 SING Y N 25 
D8K C27 C26 SING N N 26 
D8K N7  C26 SING N N 27 
D8K N7  C6  SING N N 28 
D8K C8  C6  SING N N 29 
D8K C26 O28 DOUB N N 30 
D8K C9  O11 DOUB N N 31 
D8K C9  C2  SING N N 32 
D8K C4  C6  SING N N 33 
D8K C4  N1  SING N N 34 
D8K C2  N1  SING N N 35 
D8K C2  C3  SING N N 36 
D8K C3  C16 SING N N 37 
D8K C21 C16 DOUB Y N 38 
D8K C21 C20 SING Y N 39 
D8K C16 C17 SING Y N 40 
D8K C20 C19 DOUB Y N 41 
D8K C17 C18 DOUB Y N 42 
D8K C19 C18 SING Y N 43 
D8K C19 F25 SING N N 44 
D8K C2  H1  SING N N 45 
D8K C3  H2  SING N N 46 
D8K C3  H3  SING N N 47 
D8K C12 H4  SING N N 48 
D8K C13 H5  SING N N 49 
D8K C13 H6  SING N N 50 
D8K C14 H7  SING N N 51 
D8K C14 H8  SING N N 52 
D8K C15 H9  SING N N 53 
D8K C15 H10 SING N N 54 
D8K C17 H11 SING N N 55 
D8K C18 H12 SING N N 56 
D8K C20 H13 SING N N 57 
D8K C21 H14 SING N N 58 
D8K N1  H15 SING N N 59 
D8K C6  H16 SING N N 60 
D8K N7  H17 SING N N 61 
D8K C8  H18 SING N N 62 
D8K C8  H19 SING N N 63 
D8K N10 H20 SING N N 64 
D8K N22 H21 SING N N 65 
D8K C32 H22 SING N N 66 
D8K C33 H23 SING N N 67 
D8K C33 H24 SING N N 68 
D8K C33 H25 SING N N 69 
D8K C36 H26 SING N N 70 
D8K C37 H27 SING N N 71 
D8K C37 H28 SING N N 72 
D8K C38 H29 SING N N 73 
D8K C38 H30 SING N N 74 
D8K C39 H31 SING N N 75 
D8K C39 H32 SING N N 76 
D8K O41 H33 SING N N 77 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
D8K InChI            InChI                1.03  "InChI=1S/C27H33FN6O7/c1-15-11-20(33-41-15)25(38)32-21-13-29-27(40)22-3-2-10-34(22)23(36)9-8-18(14-35)30-24(37)19(31-26(21)39)12-16-4-6-17(28)7-5-16/h4-7,11,18-19,21-22,35H,2-3,8-10,12-14H2,1H3,(H,29,40)(H,30,37)(H,31,39)(H,32,38)/t18-,19-,21-,22+/m0/s1" 
D8K InChIKey         InChI                1.03  XGIISLQJIYRWPH-BLKABHOGSA-N                                                                                                                                                                                                                                    
D8K SMILES_CANONICAL CACTVS               3.385 "Cc1onc(c1)C(=O)N[C@H]2CNC(=O)[C@H]3CCCN3C(=O)CC[C@@H](CO)NC(=O)[C@H](Cc4ccc(F)cc4)NC2=O"                                                                                                                                                                      
D8K SMILES           CACTVS               3.385 "Cc1onc(c1)C(=O)N[CH]2CNC(=O)[CH]3CCCN3C(=O)CC[CH](CO)NC(=O)[CH](Cc4ccc(F)cc4)NC2=O"                                                                                                                                                                           
D8K SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "Cc1cc(no1)C(=O)N[C@H]2CNC(=O)[C@H]3CCCN3C(=O)CC[C@H](NC(=O)[C@@H](NC2=O)Cc4ccc(cc4)F)CO"                                                                                                                                                                      
D8K SMILES           "OpenEye OEToolkits" 2.0.6 "Cc1cc(no1)C(=O)NC2CNC(=O)C3CCCN3C(=O)CCC(NC(=O)C(NC2=O)Cc4ccc(cc4)F)CO"                                                                                                                                                                                       
# 
_pdbx_chem_comp_identifier.comp_id           D8K 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.6 
_pdbx_chem_comp_identifier.identifier        "~{N}-[(5~{S},8~{S},11~{S},15~{R})-8-[(4-fluorophenyl)methyl]-5-(hydroxymethyl)-2,7,10,14-tetrakis(oxidanylidene)-1,6,9,13-tetrazabicyclo[13.3.0]octadecan-11-yl]-5-methyl-1,2-oxazole-3-carboxamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
D8K "Create component" 2018-01-09 EBI  
D8K "Initial release"  2018-02-21 RCSB 
D8K "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            D8K 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C13 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
