data_M8K
#

_chem_comp.id                                   M8K
_chem_comp.name                                 "4-cyano-~{N}-[2-(piperidin-1-ylmethyl)-1~{H}-benzimidazol-5-yl]benzamide"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C21 H21 N5 O"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2019-10-04
_chem_comp.pdbx_modified_date                   2019-11-01
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       359.424
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    M8K
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6T1M
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBE
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
M8K  N1   N1   N  0  1  N  N  N   0.238  15.168  15.959   2.093   0.051  -0.044  N1   M8K   1  
M8K  C2   C1   C  0  1  Y  N  N   3.138  14.001  12.332   5.976   1.723  -0.045  C2   M8K   2  
M8K  N3   N2   N  0  1  Y  N  N  -4.232  14.858  19.232  -3.093  -1.844   0.209  N3   M8K   3  
M8K  C4   C2   C  0  1  Y  N  N   1.677  14.871  14.045   4.529  -0.193   0.002  C4   M8K   4  
M8K  N4   N3   N  0  1  N  N  N  -6.693  12.890  19.465  -5.801   0.079  -0.112  N4   M8K   5  
M8K  C5   C3   C  0  1  Y  N  N   2.739  15.630  14.537   5.640  -1.038   0.049  C5   M8K   6  
M8K  C6   C4   C  0  1  Y  N  N   3.985  15.583  13.933   6.910  -0.507   0.050  C6   M8K   7  
M8K  O    O1   O  0  1  N  N  N  -0.676  14.965  13.888   3.011  -1.970   0.043  O    M8K   8  
M8K  C7   C5   C  0  1  N  N  N   0.304  14.989  14.616   3.165  -0.765   0.002  C7   M8K   9  
M8K  C3   C6   C  0  1  Y  N  N   1.898  14.049  12.943   4.706   1.191  -0.045  C3   M8K  10  
M8K  C1   C7   C  0  1  Y  N  N   4.193  14.769  12.823   7.087   0.878   0.003  C1   M8K  11  
M8K  C    C8   C  0  1  N  N  N   5.498  14.681  12.223   8.408   1.431   0.003  C    M8K  12  
M8K  N    N4   N  0  1  N  N  N   6.548  14.631  11.778   9.456   1.870   0.003  N    M8K  13  
M8K  C8   C9   C  0  1  Y  N  N  -0.902  15.086  16.805   0.803  -0.482   0.067  C8   M8K  14  
M8K  C13  C10  C  0  1  Y  N  N  -2.174  14.699  16.353  -0.244   0.102  -0.621  C13  M8K  15  
M8K  C12  C11  C  0  1  Y  N  N  -3.231  14.653  17.267  -1.530  -0.432  -0.509  C12  M8K  16  
M8K  N2   N5   N  0  1  Y  N  N  -4.559  14.232  17.115  -2.732  -0.094  -1.043  N2   M8K  17  
M8K  C14  C12  C  0  1  Y  N  N  -5.102  14.374  18.314  -3.646  -0.919  -0.622  C14  M8K  18  
M8K  C11  C13  C  0  1  Y  N  N  -3.015  15.028  18.589  -1.744  -1.558   0.304  C11  M8K  19  
M8K  C10  C14  C  0  1  Y  N  N  -1.767  15.422  19.045  -0.683  -2.133   0.989  C10  M8K  20  
M8K  C9   C15  C  0  1  Y  N  N  -0.708  15.443  18.147   0.581  -1.599   0.871  C9   M8K  21  
M8K  C15  C16  C  0  1  N  N  N  -6.535  14.093  18.642  -5.103  -0.860  -1.000  C15  M8K  22  
M8K  C20  C17  C  0  1  N  N  N  -6.134  13.103  20.817  -5.325   1.453  -0.319  C20  M8K  23  
M8K  C19  C18  C  0  1  N  N  N  -6.737  12.180  21.873  -5.965   2.378   0.718  C19  M8K  24  
M8K  C18  C19  C  0  1  N  N  N  -7.238  10.908  21.264  -7.488   2.320   0.576  C18  M8K  25  
M8K  C17  C20  C  0  1  N  N  N  -8.330  11.190  20.266  -7.954   0.872   0.748  C17  M8K  26  
M8K  C16  C21  C  0  1  N  N  N  -8.119  12.533  19.581  -7.256  -0.010  -0.290  C16  M8K  27  
M8K  H1   H1   H  0  1  N  N  N   1.102  15.386  16.412   2.215   1.007  -0.150  H1   M8K  28  
M8K  H2   H2   H  0  1  N  N  N   3.290  13.366  11.471   6.113   2.794  -0.086  H2   M8K  29  
M8K  H3   H3   H  0  1  N  N  N  -4.430  15.056  20.192  -3.560  -2.568   0.655  H3   M8K  30  
M8K  H5   H5   H  0  1  N  N  N   2.588  16.262  15.400   5.503  -2.109   0.086  H5   M8K  31  
M8K  H6   H6   H  0  1  N  N  N   4.796  16.179  14.324   7.769  -1.160   0.086  H6   M8K  32  
M8K  H7   H7   H  0  1  N  N  N   1.091  13.441  12.561   3.847   1.844  -0.082  H7   M8K  33  
M8K  H8   H8   H  0  1  N  N  N  -2.333  14.441  15.316  -0.068   0.968  -1.243  H8   M8K  34  
M8K  H10  H10  H  0  1  N  N  N  -1.621  15.707  20.077  -0.848  -2.999   1.613  H10  M8K  35  
M8K  H11  H11  H  0  1  N  N  N   0.274  15.737  18.486   1.406  -2.049   1.405  H11  M8K  36  
M8K  H12  H12  H  0  1  N  N  N  -6.947  14.953  19.190  -5.545  -1.851  -0.900  H12  M8K  37  
M8K  H13  H13  H  0  1  N  N  N  -7.092  13.955  17.704  -5.197  -0.522  -2.032  H13  M8K  38  
M8K  H14  H14  H  0  1  N  N  N  -5.049  12.926  20.778  -4.240   1.481  -0.211  H14  M8K  39  
M8K  H15  H15  H  0  1  N  N  N  -6.326  14.145  21.114  -5.598   1.785  -1.320  H15  M8K  40  
M8K  H16  H16  H  0  1  N  N  N  -5.967  11.940  22.621  -5.680   2.055   1.720  H16  M8K  41  
M8K  H17  H17  H  0  1  N  N  N  -7.575  12.697  22.363  -5.622   3.400   0.555  H17  M8K  42  
M8K  H18  H18  H  0  1  N  N  N  -7.634  10.259  22.059  -7.949   2.944   1.341  H18  M8K  43  
M8K  H19  H19  H  0  1  N  N  N  -6.406  10.399  20.755  -7.776   2.681  -0.411  H19  M8K  44  
M8K  H20  H20  H  0  1  N  N  N  -9.298  11.202  20.788  -7.700   0.525   1.750  H20  M8K  45  
M8K  H21  H21  H  0  1  N  N  N  -8.334  10.396  19.505  -9.033   0.817   0.607  H21  M8K  46  
M8K  H22  H22  H  0  1  N  N  N  -8.631  13.311  20.166  -7.521   0.329  -1.291  H22  M8K  47  
M8K  H23  H23  H  0  1  N  N  N  -8.554  12.486  18.572  -7.575  -1.045  -0.161  H23  M8K  48  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
M8K  N    C    TRIP  N  N   1  
M8K  C    C1   SING  N  N   2  
M8K  C2   C1   DOUB  Y  N   3  
M8K  C2   C3   SING  Y  N   4  
M8K  C1   C6   SING  Y  N   5  
M8K  C3   C4   DOUB  Y  N   6  
M8K  O    C7   DOUB  N  N   7  
M8K  C6   C5   DOUB  Y  N   8  
M8K  C4   C5   SING  Y  N   9  
M8K  C4   C7   SING  N  N  10  
M8K  C7   N1   SING  N  N  11  
M8K  N1   C8   SING  N  N  12  
M8K  C13  C8   DOUB  Y  N  13  
M8K  C13  C12  SING  Y  N  14  
M8K  C8   C9   SING  Y  N  15  
M8K  N2   C12  SING  Y  N  16  
M8K  N2   C14  DOUB  Y  N  17  
M8K  C12  C11  DOUB  Y  N  18  
M8K  C9   C10  DOUB  Y  N  19  
M8K  C14  C15  SING  N  N  20  
M8K  C14  N3   SING  Y  N  21  
M8K  C11  C10  SING  Y  N  22  
M8K  C11  N3   SING  Y  N  23  
M8K  C15  N4   SING  N  N  24  
M8K  N4   C16  SING  N  N  25  
M8K  N4   C20  SING  N  N  26  
M8K  C16  C17  SING  N  N  27  
M8K  C17  C18  SING  N  N  28  
M8K  C20  C19  SING  N  N  29  
M8K  C18  C19  SING  N  N  30  
M8K  N1   H1   SING  N  N  31  
M8K  C2   H2   SING  N  N  32  
M8K  N3   H3   SING  N  N  33  
M8K  C5   H5   SING  N  N  34  
M8K  C6   H6   SING  N  N  35  
M8K  C3   H7   SING  N  N  36  
M8K  C13  H8   SING  N  N  37  
M8K  C10  H10  SING  N  N  38  
M8K  C9   H11  SING  N  N  39  
M8K  C15  H12  SING  N  N  40  
M8K  C15  H13  SING  N  N  41  
M8K  C20  H14  SING  N  N  42  
M8K  C20  H15  SING  N  N  43  
M8K  C19  H16  SING  N  N  44  
M8K  C19  H17  SING  N  N  45  
M8K  C18  H18  SING  N  N  46  
M8K  C18  H19  SING  N  N  47  
M8K  C17  H20  SING  N  N  48  
M8K  C17  H21  SING  N  N  49  
M8K  C16  H22  SING  N  N  50  
M8K  C16  H23  SING  N  N  51  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
M8K  InChI             InChI                 1.03   "InChI=1S/C21H21N5O/c22-13-15-4-6-16(7-5-15)21(27)23-17-8-9-18-19(12-17)25-20(24-18)14-26-10-2-1-3-11-26/h4-9,12H,1-3,10-11,14H2,(H,23,27)(H,24,25)"  
M8K  InChIKey          InChI                 1.03   PYUJNKLBJTZGDT-UHFFFAOYSA-N  
M8K  SMILES_CANONICAL  CACTVS                3.385  "O=C(Nc1ccc2[nH]c(CN3CCCCC3)nc2c1)c4ccc(cc4)C#N"  
M8K  SMILES            CACTVS                3.385  "O=C(Nc1ccc2[nH]c(CN3CCCCC3)nc2c1)c4ccc(cc4)C#N"  
M8K  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "c1cc(ccc1C#N)C(=O)Nc2ccc3c(c2)nc([nH]3)CN4CCCCC4"  
M8K  SMILES            "OpenEye OEToolkits"  2.0.7  "c1cc(ccc1C#N)C(=O)Nc2ccc3c(c2)nc([nH]3)CN4CCCCC4"  
#
_pdbx_chem_comp_identifier.comp_id          M8K
_pdbx_chem_comp_identifier.type             "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program          "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version  2.0.7
_pdbx_chem_comp_identifier.identifier       "4-cyano-~{N}-[2-(piperidin-1-ylmethyl)-1~{H}-benzimidazol-5-yl]benzamide"
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
M8K  "Create component"  2019-10-04  PDBE  
M8K  "Initial release"   2019-11-06  RCSB  
##
