data_T5K
# 
_chem_comp.id                                    T5K 
_chem_comp.name                                  
;[[(2R,3S,5R)-5-[5-methyl-2,4-bis(oxidanylidene)pyrimidin-1-yl]-3-oxidanyl-oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2R,3R,4S,5R,6R)-6-methyl-5-[(E)-[2-methyl-3-oxidanyl-5-(phosphonooxymethyl)pyridin-4-yl]methylideneamino]-3,4-bis(oxidanyl)oxan-2-yl] hydrogen phosphate
;
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C24 H35 N4 O19 P3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2014-09-17 
_chem_comp.pdbx_modified_date                    2015-04-15 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        776.471 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     T5K 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4ZAH 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
T5K C01 C1  C 0 1 N N N -180.913 368.368 65.096 -2.760  -0.416 2.214  C01 T5K 1  
T5K C02 C2  C 0 1 N N R -182.181 367.986 64.393 -2.122  -0.940 0.926  C02 T5K 2  
T5K O03 O1  O 0 1 N N N -182.107 366.496 64.119 -2.157  -2.368 0.923  O03 T5K 3  
T5K C04 C3  C 0 1 N N R -183.342 366.034 63.483 -1.560  -2.964 -0.230 C04 T5K 4  
T5K O12 O2  O 0 1 N N N -185.583 368.496 69.038 -6.052  -2.658 -0.027 O12 T5K 5  
T5K C14 C4  C 0 1 N N N -185.850 367.967 71.814 -8.748  -3.482 0.174  C14 T5K 6  
T5K C17 C5  C 0 1 Y N N -182.000 368.357 69.933 -7.674  0.617  0.035  C17 T5K 7  
T5K C18 C6  C 0 1 N N N -180.571 368.471 69.299 -7.353  2.089  -0.004 C18 T5K 8  
T5K O26 O3  O 0 1 N N N -183.465 366.736 62.296 -0.194  -2.556 -0.325 O26 T5K 9  
T5K O29 O4  O 0 1 N N N -183.462 366.530 59.628 2.389   -2.557 0.161  O29 T5K 10 
T5K O31 O5  O 0 1 N N N -185.723 366.862 58.382 4.269   -4.064 0.914  O31 T5K 11 
T5K C34 C7  C 0 1 N N R -184.982 362.521 58.303 7.016   -0.928 -0.825 C34 T5K 12 
T5K C36 C8  C 0 1 N N R -185.564 360.790 59.870 7.646   1.249  -1.298 C36 T5K 13 
T5K C38 C9  C 0 1 N N N -185.438 361.810 62.151 7.729   3.697  -1.254 C38 T5K 14 
T5K C39 C10 C 0 1 N N N -185.269 361.646 63.597 7.867   4.862  -0.585 C39 T5K 15 
T5K O43 O6  O 0 1 N N N -185.187 358.289 61.075 8.054   1.433  1.343  O43 T5K 16 
T5K O44 O7  O 0 1 N N N -184.952 360.102 65.297 8.211   5.869  1.439  O44 T5K 17 
T5K C45 C11 C 0 1 N N N -185.294 362.849 64.487 7.790   6.177  -1.317 C45 T5K 18 
T5K C47 C12 C 0 1 N N S -186.335 362.460 58.299 8.542   -0.894 -0.558 C47 T5K 19 
T5K O50 O8  O 0 1 N N N -181.257 367.083 60.869 0.743   -3.534 1.805  O50 T5K 20 
T5K C05 C13 C 0 1 N N R -184.539 366.330 64.334 -2.316  -2.516 -1.484 C05 T5K 21 
T5K C06 C14 C 0 1 N N S -184.687 367.802 64.592 -2.293  -0.986 -1.564 C06 T5K 22 
T5K C07 C15 C 0 1 N N R -183.439 368.402 65.149 -2.900  -0.409 -0.281 C07 T5K 23 
T5K N08 N1  N 0 1 N N N -183.508 368.047 66.664 -4.303  -0.818 -0.177 N08 T5K 24 
T5K C09 C16 C 0 1 N N N -183.035 368.795 67.597 -5.235  0.077  -0.126 C09 T5K 25 
T5K C10 C17 C 0 1 Y N N -183.142 368.490 69.146 -6.649  -0.335 -0.022 C10 T5K 26 
T5K C11 C18 C 0 1 Y N N -184.396 368.378 69.764 -7.004  -1.692 0.024  C11 T5K 27 
T5K C13 C19 C 0 1 Y N N -184.456 368.111 71.136 -8.347  -2.030 0.123  C13 T5K 28 
T5K N15 N2  N 0 1 Y N N -183.360 367.994 71.856 -9.275  -1.097 0.174  N15 T5K 29 
T5K C16 C20 C 0 1 Y N N -182.156 368.117 71.277 -8.981  0.189  0.133  C16 T5K 30 
T5K O19 O9  O 0 1 N N N -180.257 369.847 69.260 -8.565  2.843  0.074  O19 T5K 31 
T5K P20 P1  P 0 1 N N N -178.938 370.318 68.457 -8.599  4.452  0.058  P20 T5K 32 
T5K O21 O10 O 0 1 N N N -179.197 371.870 68.398 -10.127 4.957  0.029  O21 T5K 33 
T5K O22 O11 O 0 1 N N N -177.677 369.787 69.118 -7.872  5.017  1.379  O22 T5K 34 
T5K O23 O12 O 0 1 N N N -178.869 369.724 67.078 -7.892  4.949  -1.144 O23 T5K 35 
T5K O24 O13 O 0 1 N N N -185.768 367.904 65.546 -3.058  -0.555 -2.691 O24 T5K 36 
T5K O25 O14 O 0 1 N N N -185.702 365.915 63.597 -1.686  -3.064 -2.643 O25 T5K 37 
T5K P27 P2  P 0 1 N N N -182.533 366.267 60.972 1.014   -3.370 0.359  P27 T5K 38 
T5K O28 O15 O 0 1 N N N -182.191 364.801 61.068 1.143   -4.819 -0.330 O28 T5K 39 
T5K P30 P3  P 0 1 N N N -185.118 366.226 59.625 3.849   -2.647 0.834  P30 T5K 40 
T5K O32 O16 O 0 1 N N N -185.296 364.534 59.561 4.905   -1.825 -0.062 O32 T5K 41 
T5K C33 C21 C 0 1 N N N -184.473 363.846 58.615 6.307   -1.800 0.214  C33 T5K 42 
T5K O35 O17 O 0 1 N N N -184.505 361.411 59.447 6.618   0.453  -0.686 O35 T5K 43 
T5K N37 N3  N 0 1 N N N -185.414 360.625 61.275 7.796   2.513  -0.572 N37 T5K 44 
T5K C40 C22 C 0 1 N N N -185.089 360.297 64.138 8.084   4.831  0.814  C40 T5K 45 
T5K N41 N4  N 0 1 N N N -185.050 359.155 63.296 8.149   3.643  1.448  N41 T5K 46 
T5K C42 C23 C 0 1 N N N -185.217 359.221 61.777 7.998   2.497  0.758  C42 T5K 47 
T5K C46 C24 C 0 1 N N N -186.798 361.793 59.609 8.957   0.442  -1.222 C46 T5K 48 
T5K O48 O18 O 0 1 N N N -186.853 361.644 57.185 9.195   -1.999 -1.185 O48 T5K 49 
T5K O49 O19 O 0 1 N N N -185.821 366.779 60.863 3.797   -2.019 2.315  O49 T5K 50 
T5K H1  H1  H 0 1 N N N -180.925 369.446 65.315 -3.795  -0.755 2.272  H1  T5K 51 
T5K H2  H2  H 0 1 N N N -180.831 367.804 66.037 -2.206  -0.794 3.074  H2  T5K 52 
T5K H3  H3  H 0 1 N N N -180.052 368.134 64.452 -2.734  0.674  2.216  H3  T5K 53 
T5K H4  H4  H 0 1 N N N -182.194 368.502 63.421 -1.088  -0.601 0.869  H4  T5K 54 
T5K H5  H5  H 0 1 N N N -183.284 364.951 63.298 -1.610  -4.050 -0.145 H5  T5K 55 
T5K H6  H6  H 0 1 N N N -186.324 368.392 69.623 -5.714  -2.924 0.839  H6  T5K 56 
T5K H7  H7  H 0 1 N N N -185.717 367.771 72.888 -8.773  -3.816 1.211  H7  T5K 57 
T5K H8  H8  H 0 1 N N N -186.421 368.897 71.679 -9.736  -3.602 -0.271 H8  T5K 58 
T5K H9  H9  H 0 1 N N N -186.397 367.131 71.354 -8.024  -4.078 -0.383 H9  T5K 59 
T5K H10 H10 H 0 1 N N N -180.572 368.053 68.282 -6.712  2.344  0.839  H10 T5K 60 
T5K H11 H11 H 0 1 N N N -179.838 367.931 69.916 -6.839  2.324  -0.936 H11 T5K 61 
T5K H12 H12 H 0 1 N N N -184.569 362.186 57.340 6.808   -1.289 -1.832 H12 T5K 62 
T5K H13 H13 H 0 1 N N N -185.759 359.834 59.362 7.391   1.447  -2.339 H13 T5K 63 
T5K H14 H14 H 0 1 N N N -185.579 362.794 61.729 7.562   3.701  -2.321 H14 T5K 64 
T5K H15 H15 H 0 1 N N N -185.153 362.536 65.532 6.756   6.523  -1.334 H15 T5K 65 
T5K H16 H16 H 0 1 N N N -184.485 363.536 64.198 8.411   6.914  -0.807 H16 T5K 66 
T5K H17 H17 H 0 1 N N N -186.263 363.360 64.385 8.146   6.046  -2.338 H17 T5K 67 
T5K H18 H18 H 0 1 N N N -186.776 363.466 58.247 8.750   -0.877 0.512  H18 T5K 68 
T5K H19 H19 H 0 1 N N N -184.466 365.787 65.288 -3.348  -2.862 -1.431 H19 T5K 69 
T5K H20 H20 H 0 1 N N N -184.956 368.313 63.656 -1.264  -0.642 -1.666 H20 T5K 70 
T5K H21 H21 H 0 1 N N N -183.526 369.496 65.069 -2.838  0.678  -0.305 H21 T5K 71 
T5K H22 H22 H 0 1 N N N -182.526 369.700 67.301 -4.980  1.126  -0.161 H22 T5K 72 
T5K H23 H23 H 0 1 N N N -181.273 368.024 71.892 -9.777  0.917  0.181  H23 T5K 73 
T5K H24 H24 H 0 1 N N N -179.262 372.146 67.491 -10.224 5.919  0.019  H24 T5K 74 
T5K H25 H25 H 0 1 N N N -177.202 369.242 68.502 -8.283  4.731  2.207  H25 T5K 75 
T5K H26 H26 H 0 1 N N N -185.919 368.818 65.758 -2.733  -0.889 -3.538 H26 T5K 76 
T5K H27 H27 H 0 1 N N N -186.482 366.090 64.111 -1.660  -4.030 -2.657 H27 T5K 77 
T5K H28 H28 H 0 1 N N N -181.247 364.693 61.044 1.322   -4.788 -1.280 H28 T5K 78 
T5K H29 H29 H 0 1 N N N -183.460 363.747 59.033 6.704   -2.814 0.170  H29 T5K 79 
T5K H30 H30 H 0 1 N N N -184.431 364.436 57.688 6.474   -1.388 1.209  H30 T5K 80 
T5K H31 H31 H 0 1 N N N -184.906 358.260 63.718 8.298   3.614  2.406  H31 T5K 81 
T5K H32 H32 H 0 1 N N N -186.907 362.525 60.423 9.354   0.264  -2.221 H32 T5K 82 
T5K H33 H33 H 0 1 N N N -187.745 361.249 59.477 9.690   0.963  -0.605 H33 T5K 83 
T5K H34 H34 H 0 1 N N N -187.802 361.627 57.219 10.151  -2.021 -1.046 H34 T5K 84 
T5K H35 H35 H 0 1 N N N -186.487 367.402 60.598 3.529   -1.090 2.339  H35 T5K 85 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
T5K O48 C47 SING N N 1  
T5K C47 C34 SING N N 2  
T5K C47 C46 SING N N 3  
T5K C34 C33 SING N N 4  
T5K C34 O35 SING N N 5  
T5K O31 P30 DOUB N N 6  
T5K C33 O32 SING N N 7  
T5K O35 C36 SING N N 8  
T5K O32 P30 SING N N 9  
T5K C46 C36 SING N N 10 
T5K P30 O29 SING N N 11 
T5K P30 O49 SING N N 12 
T5K O29 P27 SING N N 13 
T5K C36 N37 SING N N 14 
T5K O50 P27 DOUB N N 15 
T5K P27 O28 SING N N 16 
T5K P27 O26 SING N N 17 
T5K O43 C42 DOUB N N 18 
T5K N37 C42 SING N N 19 
T5K N37 C38 SING N N 20 
T5K C42 N41 SING N N 21 
T5K C38 C39 DOUB N N 22 
T5K O26 C04 SING N N 23 
T5K N41 C40 SING N N 24 
T5K C04 O03 SING N N 25 
T5K C04 C05 SING N N 26 
T5K C39 C40 SING N N 27 
T5K C39 C45 SING N N 28 
T5K O25 C05 SING N N 29 
T5K O03 C02 SING N N 30 
T5K C40 O44 DOUB N N 31 
T5K C05 C06 SING N N 32 
T5K C02 C01 SING N N 33 
T5K C02 C07 SING N N 34 
T5K C06 C07 SING N N 35 
T5K C06 O24 SING N N 36 
T5K C07 N08 SING N N 37 
T5K N08 C09 DOUB N N 38 
T5K O23 P20 DOUB N N 39 
T5K C09 C10 SING N N 40 
T5K O21 P20 SING N N 41 
T5K P20 O22 SING N N 42 
T5K P20 O19 SING N N 43 
T5K O12 C11 SING N N 44 
T5K C10 C11 DOUB Y N 45 
T5K C10 C17 SING Y N 46 
T5K O19 C18 SING N N 47 
T5K C18 C17 SING N N 48 
T5K C11 C13 SING Y N 49 
T5K C17 C16 DOUB Y N 50 
T5K C13 C14 SING N N 51 
T5K C13 N15 DOUB Y N 52 
T5K C16 N15 SING Y N 53 
T5K C01 H1  SING N N 54 
T5K C01 H2  SING N N 55 
T5K C01 H3  SING N N 56 
T5K C02 H4  SING N N 57 
T5K C04 H5  SING N N 58 
T5K O12 H6  SING N N 59 
T5K C14 H7  SING N N 60 
T5K C14 H8  SING N N 61 
T5K C14 H9  SING N N 62 
T5K C18 H10 SING N N 63 
T5K C18 H11 SING N N 64 
T5K C34 H12 SING N N 65 
T5K C36 H13 SING N N 66 
T5K C38 H14 SING N N 67 
T5K C45 H15 SING N N 68 
T5K C45 H16 SING N N 69 
T5K C45 H17 SING N N 70 
T5K C47 H18 SING N N 71 
T5K C05 H19 SING N N 72 
T5K C06 H20 SING N N 73 
T5K C07 H21 SING N N 74 
T5K C09 H22 SING N N 75 
T5K C16 H23 SING N N 76 
T5K O21 H24 SING N N 77 
T5K O22 H25 SING N N 78 
T5K O24 H26 SING N N 79 
T5K O25 H27 SING N N 80 
T5K O28 H28 SING N N 81 
T5K C33 H29 SING N N 82 
T5K C33 H30 SING N N 83 
T5K N41 H31 SING N N 84 
T5K C46 H32 SING N N 85 
T5K C46 H33 SING N N 86 
T5K O48 H34 SING N N 87 
T5K O49 H35 SING N N 88 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
T5K SMILES           ACDLabs              12.01 "CC1C(C(C(C(O1)OP(OP(=O)(O)OCC3OC(N2C=C(C(=O)NC2=O)C)CC3O)(=O)O)O)O)\N=C\c4c(cnc(C)c4O)COP(O)(O)=O" 
T5K InChI            InChI                1.03  
;InChI=1S/C24H35N4O19P3/c1-10-7-28(24(34)27-22(10)33)17-4-15(29)16(45-17)9-43-49(38,39)47-50(40,41)46-23-21(32)20(31)18(12(3)44-23)26-6-14-13(8-42-48(35,36)37)5-25-11(2)19(14)30/h5-7,12,15-18,20-21,23,29-32H,4,8-9H2,1-3H3,(H,38,39)(H,40,41)(H,27,33,34)(H2,35,36,37)/b26-6+/t12-,15+,16-,17-,18+,20+,21-,23-/m1/s1
;
T5K InChIKey         InChI                1.03  LEIRFGMKEVPNBT-QBLVGKJYSA-N 
T5K SMILES_CANONICAL CACTVS               3.385 "C[C@H]1O[C@H](O[P](O)(=O)O[P](O)(=O)OC[C@H]2O[C@H](C[C@@H]2O)N3C=C(C)C(=O)NC3=O)[C@H](O)[C@@H](O)[C@H]1N=Cc4c(O)c(C)ncc4CO[P](O)(O)=O" 
T5K SMILES           CACTVS               3.385 "C[CH]1O[CH](O[P](O)(=O)O[P](O)(=O)OC[CH]2O[CH](C[CH]2O)N3C=C(C)C(=O)NC3=O)[CH](O)[CH](O)[CH]1N=Cc4c(O)c(C)ncc4CO[P](O)(O)=O" 
T5K SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "Cc1c(c(c(cn1)COP(=O)(O)O)/C=N/[C@H]2[C@H](O[C@@H]([C@@H]([C@H]2O)O)OP(=O)(O)OP(=O)(O)OC[C@@H]3[C@H](C[C@@H](O3)N4C=C(C(=O)NC4=O)C)O)C)O" 
T5K SMILES           "OpenEye OEToolkits" 1.9.2 "Cc1c(c(c(cn1)COP(=O)(O)O)C=NC2C(OC(C(C2O)O)OP(=O)(O)OP(=O)(O)OCC3C(CC(O3)N4C=C(C(=O)NC4=O)C)O)C)O" 
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
T5K "SYSTEMATIC NAME" ACDLabs              12.01 
;(2R,3R,4S,5R,6R)-3,4-dihydroxy-5-[(E)-({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methylidene)amino]-6-methyltetrahydro-2H-pyran-2-yl [(2R,3S,5R)-3-hydroxy-5-(5-methyl-2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)tetrahydrofuran-2-yl]methyl dihydrogen diphosphate (non-preferred name)
;
T5K "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 
;[[(2R,3S,5R)-5-[5-methyl-2,4-bis(oxidanylidene)pyrimidin-1-yl]-3-oxidanyl-oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2R,3R,4S,5R,6R)-6-methyl-5-[(E)-[2-methyl-3-oxidanyl-5-(phosphonooxymethyl)pyridin-4-yl]methylideneamino]-3,4-bis(oxidanyl)oxan-2-yl] hydrogen phosphate
;
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
T5K "Create component"   2014-09-17 RCSB 
T5K "Initial release"    2014-09-24 RCSB 
T5K "Other modification" 2015-04-15 RCSB 
T5K "Modify name"        2015-04-15 RCSB 
# 
