data_Y2K
# 
_chem_comp.id                                    Y2K 
_chem_comp.name                                  "2,2,2-trifluoroethyl (2R,3S)-2-(carbamimidamidomethyl)-3-[2-(4-chloro-3-fluoroanilino)(oxo)acetamido]-6-[(methylamino)methyl]-2,3-dihydro-1H-indole-1-carboxylate" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C23 H24 Cl F4 N7 O4" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-12-27 
_chem_comp.pdbx_modified_date                    2023-03-31 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        573.928 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     Y2K 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8FM4 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
Y2K C13  C1  C  0 1 N N R -27.681 -1.665 -76.413 -1.454 -1.711 -0.122 C13  Y2K 1  
Y2K C17  C2  C  0 1 N N N -25.236 2.010  -75.499 3.183  -0.199 0.158  C17  Y2K 2  
Y2K C20  C3  C  0 1 Y N N -23.167 4.598  -77.262 5.418  1.268  -0.828 C20  Y2K 3  
Y2K C21  C4  C  0 1 Y N N -22.938 5.984  -77.331 6.572  1.695  -1.455 C21  Y2K 4  
Y2K C22  C5  C  0 1 Y N N -23.404 6.748  -76.290 7.803  1.219  -1.041 C22  Y2K 5  
Y2K C24  C6  C  0 1 Y N N -24.113 6.190  -75.243 7.882  0.310  0.003  C24  Y2K 6  
Y2K C26  C7  C  0 1 Y N N -24.366 4.832  -75.139 6.730  -0.120 0.634  C26  Y2K 7  
Y2K C02  C8  C  0 1 N N N -30.140 -1.749 -76.233 -3.735 -1.063 -0.899 C02  Y2K 8  
Y2K C04  C9  C  0 1 Y N N -28.592 -2.297 -74.281 -2.434 0.268  0.673  C04  Y2K 9  
Y2K C05  C10 C  0 1 Y N N -27.243 -2.045 -74.047 -1.198 0.223  1.297  C05  Y2K 10 
Y2K C06  C11 C  0 1 Y N N -26.663 -2.229 -72.799 -0.815 1.227  2.166  C06  Y2K 11 
Y2K C07  C12 C  0 1 Y N N -27.481 -2.704 -71.771 -1.665 2.287  2.420  C07  Y2K 12 
Y2K C08  C13 C  0 1 Y N N -28.860 -2.974 -71.994 -2.901 2.341  1.801  C08  Y2K 13 
Y2K C09  C14 C  0 1 N N N -29.675 -3.509 -70.780 -3.828 3.496  2.076  C09  Y2K 14 
Y2K C11  C15 C  0 1 N N N -31.010 -1.498 -70.419 -4.459 5.718  1.348  C11  Y2K 15 
Y2K C12  C16 C  0 1 Y N N -29.437 -2.771 -73.262 -3.287 1.342  0.933  C12  Y2K 16 
Y2K C14  C17 C  0 1 N N S -26.582 -1.537 -75.371 -0.477 -1.028 0.849  C14  Y2K 17 
Y2K C16  C18 C  0 1 N N N -25.352 0.550  -75.736 1.913  -0.553 0.860  C16  Y2K 18 
Y2K C19  C19 C  0 1 Y N N -23.824 4.045  -76.138 5.493  0.358  0.220  C19  Y2K 19 
Y2K C29  C20 C  0 1 N N N -27.431 -2.753 -77.526 -1.842 -3.096 0.401  C29  Y2K 20 
Y2K C31  C21 C  0 1 N N N -25.063 -3.003 -78.495 -0.819 -5.320 0.643  C31  Y2K 21 
Y2K C35  C22 C  0 1 N N N -31.467 -1.099 -77.971 -5.879 -0.452 -1.753 C35  Y2K 22 
Y2K C36  C23 C  0 1 N N N -31.592 -2.168 -79.112 -6.879 0.703  -1.676 C36  Y2K 23 
Y2K F25  F1  F  0 1 N N N -24.553 7.012  -74.326 9.086  -0.154 0.404  F25  Y2K 24 
Y2K F37  F2  F  0 1 N N N -31.497 -3.372 -78.528 -6.277 1.873  -2.152 F37  Y2K 25 
Y2K F38  F3  F  0 1 N N N -30.601 -2.082 -80.050 -7.999 0.404  -2.459 F38  Y2K 26 
Y2K F39  F4  F  0 1 N N N -32.815 -1.986 -79.729 -7.275 0.890  -0.347 F39  Y2K 27 
Y2K N03  N1  N  0 1 N N N -28.816 -1.979 -75.658 -2.629 -0.836 -0.164 N03  Y2K 28 
Y2K N10  N2  N  0 1 N N N -31.014 -2.938 -70.838 -3.570 4.572  1.110  N10  Y2K 29 
Y2K N15  N3  N  0 1 N N N -26.462 -0.156 -75.163 0.769  -0.681 0.160  N15  Y2K 30 
Y2K N18  N4  N  0 1 N N N -24.066 2.610  -76.172 4.327  -0.072 0.859  N18  Y2K 31 
Y2K N30  N5  N  0 1 N N N -26.366 -2.313 -78.413 -0.684 -3.990 0.321  N30  Y2K 32 
Y2K N32  N6  N  0 1 N N N -24.048 -2.445 -79.394 -1.976 -5.785 1.020  N32  Y2K 33 
Y2K N33  N7  N  0 1 N N N -24.782 -4.072 -77.817 0.268  -6.159 0.567  N33  Y2K 34 
Y2K O01  O1  O  0 1 N N N -31.187 -1.990 -75.696 -3.847 -2.098 -1.526 O01  Y2K 35 
Y2K O27  O2  O  0 1 N N N -26.012 2.593  -74.816 3.184  -0.027 -1.043 O27  Y2K 36 
Y2K O28  O3  O  0 1 N N N -24.537 0.017  -76.356 1.911  -0.726 2.062  O28  Y2K 37 
Y2K O34  O4  O  0 1 N N N -30.138 -1.229 -77.507 -4.717 -0.142 -0.940 O34  Y2K 38 
Y2K CL23 CL1 CL 0 0 N N N -23.198 8.529  -76.212 9.251  1.758  -1.832 CL23 Y2K 39 
Y2K H1   H1  H  0 1 N N N -27.809 -0.693 -76.911 -1.008 -1.792 -1.113 H1   Y2K 40 
Y2K H2   H2  H  0 1 N N N -22.841 3.956  -78.067 4.458  1.644  -1.149 H2   Y2K 41 
Y2K H3   H3  H  0 1 N N N -22.418 6.428  -78.167 6.513  2.402  -2.269 H3   Y2K 42 
Y2K H4   H4  H  0 1 N N N -24.948 4.415  -74.331 6.791  -0.828 1.447  H4   Y2K 43 
Y2K H5   H5  H  0 1 N N N -25.619 -2.013 -72.629 0.150  1.183  2.648  H5   Y2K 44 
Y2K H6   H6  H  0 1 N N N -27.060 -2.869 -70.790 -1.365 3.071  3.099  H6   Y2K 45 
Y2K H7   H7  H  0 1 N N N -29.737 -4.606 -70.828 -4.862 3.163  1.982  H7   Y2K 46 
Y2K H8   H8  H  0 1 N N N -29.184 -3.210 -69.842 -3.657 3.867  3.087  H8   Y2K 47 
Y2K H9   H9  H  0 1 N N N -32.033 -1.097 -70.473 -5.496 5.400  1.248  H9   Y2K 48 
Y2K H10  H10 H  0 1 N N N -30.639 -1.418 -69.386 -4.292 6.104  2.353  H10  Y2K 49 
Y2K H11  H11 H  0 1 N N N -30.355 -0.923 -71.090 -4.247 6.500  0.618  H11  Y2K 50 
Y2K H12  H12 H  0 1 N N N -30.483 -2.971 -73.444 -4.253 1.390  0.453  H12  Y2K 51 
Y2K H13  H13 H  0 1 N N N -25.656 -2.072 -75.628 -0.272 -1.677 1.700  H13  Y2K 52 
Y2K H14  H14 H  0 1 N N N -28.353 -2.900 -78.107 -2.166 -3.014 1.439  H14  Y2K 53 
Y2K H15  H15 H  0 1 N N N -27.142 -3.702 -77.051 -2.654 -3.498 -0.203 H15  Y2K 54 
Y2K H16  H16 H  0 1 N N N -31.644 -0.087 -78.365 -6.348 -1.364 -1.382 H16  Y2K 55 
Y2K H17  H17 H  0 1 N N N -32.183 -1.308 -77.163 -5.570 -0.598 -2.788 H17  Y2K 56 
Y2K H18  H18 H  0 1 N N N -31.356 -3.004 -71.775 -2.602 4.854  1.133  H18  Y2K 57 
Y2K H20  H20 H  0 1 N N N -27.144 0.333  -74.620 0.770  -0.544 -0.800 H20  Y2K 58 
Y2K H21  H21 H  0 1 N N N -23.426 2.018  -76.662 4.341  -0.277 1.807  H21  Y2K 59 
Y2K H22  H22 H  0 1 N N N -26.522 -1.512 -78.990 0.178  -3.644 0.040  H22  Y2K 60 
Y2K H23  H23 H  0 1 N N N -23.204 -2.981 -79.384 -2.071 -6.723 1.248  H23  Y2K 61 
Y2K H24  H24 H  0 1 N N N -25.464 -4.468 -77.202 1.129  -5.813 0.287  H24  Y2K 62 
Y2K H25  H25 H  0 1 N N N -23.883 -4.501 -77.909 0.173  -7.097 0.795  H25  Y2K 63 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
Y2K F38 C36  SING N N 1  
Y2K F39 C36  SING N N 2  
Y2K N32 C31  DOUB N N 3  
Y2K C36 F37  SING N N 4  
Y2K C36 C35  SING N N 5  
Y2K C31 N30  SING N N 6  
Y2K C31 N33  SING N N 7  
Y2K N30 C29  SING N N 8  
Y2K C35 O34  SING N N 9  
Y2K C29 C13  SING N N 10 
Y2K O34 C02  SING N N 11 
Y2K C21 C20  DOUB Y N 12 
Y2K C21 C22  SING Y N 13 
Y2K C20 C19  SING Y N 14 
Y2K C13 N03  SING N N 15 
Y2K C13 C14  SING N N 16 
Y2K O28 C16  DOUB N N 17 
Y2K C22 CL23 SING N N 18 
Y2K C22 C24  DOUB Y N 19 
Y2K C02 O01  DOUB N N 20 
Y2K C02 N03  SING N N 21 
Y2K N18 C19  SING N N 22 
Y2K N18 C17  SING N N 23 
Y2K C19 C26  DOUB Y N 24 
Y2K C16 C17  SING N N 25 
Y2K C16 N15  SING N N 26 
Y2K N03 C04  SING N N 27 
Y2K C17 O27  DOUB N N 28 
Y2K C14 N15  SING N N 29 
Y2K C14 C05  SING N N 30 
Y2K C24 C26  SING Y N 31 
Y2K C24 F25  SING N N 32 
Y2K C04 C05  DOUB Y N 33 
Y2K C04 C12  SING Y N 34 
Y2K C05 C06  SING Y N 35 
Y2K C12 C08  DOUB Y N 36 
Y2K C06 C07  DOUB Y N 37 
Y2K C08 C07  SING Y N 38 
Y2K C08 C09  SING N N 39 
Y2K N10 C09  SING N N 40 
Y2K N10 C11  SING N N 41 
Y2K C13 H1   SING N N 42 
Y2K C20 H2   SING N N 43 
Y2K C21 H3   SING N N 44 
Y2K C26 H4   SING N N 45 
Y2K C06 H5   SING N N 46 
Y2K C07 H6   SING N N 47 
Y2K C09 H7   SING N N 48 
Y2K C09 H8   SING N N 49 
Y2K C11 H9   SING N N 50 
Y2K C11 H10  SING N N 51 
Y2K C11 H11  SING N N 52 
Y2K C12 H12  SING N N 53 
Y2K C14 H13  SING N N 54 
Y2K C29 H14  SING N N 55 
Y2K C29 H15  SING N N 56 
Y2K C35 H16  SING N N 57 
Y2K C35 H17  SING N N 58 
Y2K N10 H18  SING N N 59 
Y2K N15 H20  SING N N 60 
Y2K N18 H21  SING N N 61 
Y2K N30 H22  SING N N 62 
Y2K N32 H23  SING N N 63 
Y2K N33 H24  SING N N 64 
Y2K N33 H25  SING N N 65 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
Y2K SMILES           ACDLabs              12.01 "Clc1ccc(cc1F)NC(=O)C(=O)NC1c2ccc(cc2N(C1CNC(=N)N)C(=O)OCC(F)(F)F)CNC"                                                                                                                                                   
Y2K InChI            InChI                1.06  "InChI=1S/C23H24ClF4N7O4/c1-31-8-11-2-4-13-16(6-11)35(22(38)39-10-23(26,27)28)17(9-32-21(29)30)18(13)34-20(37)19(36)33-12-3-5-14(24)15(25)7-12/h2-7,17-18,31H,8-10H2,1H3,(H,33,36)(H,34,37)(H4,29,30,32)/t17-,18+/m1/s1" 
Y2K InChIKey         InChI                1.06  ZQTHNGZNKSRWJH-MSOLQXFVSA-N                                                                                                                                                                                              
Y2K SMILES_CANONICAL CACTVS               3.385 "CNCc1ccc2[C@H](NC(=O)C(=O)Nc3ccc(Cl)c(F)c3)[C@@H](CNC(N)=N)N(C(=O)OCC(F)(F)F)c2c1"                                                                                                                                      
Y2K SMILES           CACTVS               3.385 "CNCc1ccc2[CH](NC(=O)C(=O)Nc3ccc(Cl)c(F)c3)[CH](CNC(N)=N)N(C(=O)OCC(F)(F)F)c2c1"                                                                                                                                         
Y2K SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "[H]/N=C(/N)\NC[C@@H]1[C@H](c2ccc(cc2N1C(=O)OCC(F)(F)F)CNC)NC(=O)C(=O)Nc3ccc(c(c3)F)Cl"                                                                                                                                  
Y2K SMILES           "OpenEye OEToolkits" 2.0.7 "CNCc1ccc2c(c1)N(C(C2NC(=O)C(=O)Nc3ccc(c(c3)F)Cl)CNC(=N)N)C(=O)OCC(F)(F)F"                                                                                                                                               
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
Y2K "SYSTEMATIC NAME" ACDLabs              12.01 "2,2,2-trifluoroethyl (2R,3S)-2-(carbamimidamidomethyl)-3-[2-(4-chloro-3-fluoroanilino)(oxo)acetamido]-6-[(methylamino)methyl]-2,3-dihydro-1H-indole-1-carboxylate"                                      
Y2K "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "2,2,2-tris(fluoranyl)ethyl (2~{R},3~{S})-2-(carbamimidamidomethyl)-3-[[2-[(4-chloranyl-3-fluoranyl-phenyl)amino]-2-oxidanylidene-ethanoyl]amino]-6-(methylaminomethyl)-2,3-dihydroindole-1-carboxylate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
Y2K "Create component" 2022-12-27 RCSB 
Y2K "Initial release"  2023-04-05 RCSB 
# 
