data_YLK
# 
_chem_comp.id                                    YLK 
_chem_comp.name                                  "(1'S,3aS,5R,16R,17S,19Z,21R,21aR)-6'-chloro-20-fluoro-21-methoxy-16,17-dimethyl-2,3,3',3a,4',16,17,18,21,21a-decahydro-2'H,6H,8H-15lambda~6~-spiro[10,12-etheno-15lambda~6~-furo[3,2-i][1,4]oxazepino[3,4-f][1,2,7]thiadiazacyclohexadecine-7,1'-naphthalene]-13,15,15(4H,14H)-trione" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C33 H40 Cl F N2 O6 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-02-09 
_chem_comp.pdbx_modified_date                    2023-05-12 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        647.197 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     YLK 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8G3T 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
YLK C1   C1  C  0 1 N N N 11.864 59.612 -9.511  -0.584 5.583  -0.978 C1   YLK 1  
YLK C3   C2  C  0 1 N N R 11.996 59.121 -7.104  -1.308 3.828  0.482  C3   YLK 2  
YLK C5   C3  C  0 1 N N N 13.337 59.796 -6.845  -2.653 3.379  -0.026 C5   YLK 3  
YLK C7   C4  C  0 1 N N N 14.470 59.154 -7.068  -3.481 2.716  0.746  C7   YLK 4  
YLK C8   C5  C  0 1 N N N 15.835 59.788 -6.837  -4.836 2.292  0.242  C8   YLK 5  
YLK C11  C6  C  0 1 N N N 17.997 59.399 -5.566  -4.937 1.351  -2.067 C11  YLK 6  
YLK C12  C7  C  0 1 N N R 17.366 57.784 -7.500  -5.793 0.014  -0.140 C12  YLK 7  
YLK C19  C8  C  0 1 N N N 15.612 55.365 -5.986  -3.188 -2.971 -0.098 C19  YLK 8  
YLK O20  O1  O  0 1 N N N 15.120 55.472 -7.107  -3.839 -3.998 -0.137 O20  YLK 9  
YLK C21  C9  C  0 1 Y N N 14.754 54.972 -4.865  -1.769 -2.991 0.320  C21  YLK 10 
YLK C23  C10 C  0 1 Y N N 14.297 53.712 -2.880  0.191  -4.165 1.031  C23  YLK 11 
YLK C24  C11 C  0 1 Y N N 13.091 54.401 -2.719  0.879  -2.959 1.142  C24  YLK 12 
YLK O25  O2  O  0 1 N N N 12.366 54.017 -1.639  2.172  -3.010 1.555  O25  YLK 13 
YLK C27  C12 C  0 1 N N S 10.106 54.972 -1.600  3.300  -1.121 0.624  C27  YLK 14 
YLK C30  C13 C  0 1 N N N 7.279  55.405 -0.576  5.652  0.285  1.834  C30  YLK 15 
YLK C31  C14 C  0 1 Y N N 8.486  55.413 0.326   5.623  -0.124 0.384  C31  YLK 16 
YLK C32  C15 C  0 1 Y N N 8.234  55.626 1.681   6.733  0.162  -0.396 C32  YLK 17 
YLK C33  C16 C  0 1 Y N N 9.277  55.644 2.592   6.755  -0.189 -1.731 C33  YLK 18 
YLK C35  C17 C  0 1 Y N N 10.576 55.447 2.175   5.661  -0.826 -2.287 C35  YLK 19 
YLK C36  C18 C  0 1 Y N N 10.836 55.230 0.837   4.559  -1.110 -1.508 C36  YLK 20 
YLK C37  C19 C  0 1 Y N N 9.796  55.203 -0.127  4.532  -0.763 -0.161 C37  YLK 21 
YLK C38  C20 C  0 1 N N N 10.815 56.226 -2.131  2.054  -0.532 -0.033 C38  YLK 22 
YLK C40  C21 C  0 1 N N N 10.915 56.995 -4.496  -0.069 0.482  0.431  C40  YLK 23 
YLK O2   O3  O  0 1 N N N 11.352 59.807 -8.181  -0.479 4.204  -0.617 O2   YLK 24 
YLK F6   F1  F  0 1 N N N 13.346 61.070 -6.407  -3.013 3.676  -1.297 F6   YLK 25 
YLK C9   C22 C  0 1 N N S 16.882 58.746 -6.399  -4.724 1.012  -0.589 C9   YLK 26 
YLK C14  C23 C  0 1 N N N 18.394 58.384 -8.482  -7.146 0.415  -0.736 C14  YLK 27 
YLK S15  S1  S  0 1 N N N 17.966 56.192 -6.863  -5.365 -1.659 -0.700 S15  YLK 28 
YLK O16  O4  O  0 1 N N N 17.947 55.184 -7.870  -5.935 -2.630 0.171  O16  YLK 29 
YLK O17  O5  O  0 1 N N N 19.151 56.368 -6.083  -5.511 -1.775 -2.109 O17  YLK 30 
YLK N18  N1  N  0 1 N N N 16.904 55.674 -5.725  -3.734 -1.778 -0.438 N18  YLK 31 
YLK C22  C24 C  0 1 Y N N 15.144 53.980 -3.934  -1.126 -4.189 0.627  C22  YLK 32 
YLK C26  C25 C  0 1 N N N 10.974 53.704 -1.796  3.160  -2.662 0.579  C26  YLK 33 
YLK C28  C26 C  0 1 N N N 8.815  54.766 -2.445  3.394  -0.729 2.091  C28  YLK 34 
YLK C29  C27 C  0 1 N N N 7.636  55.672 -2.035  4.220  0.532  2.304  C29  YLK 35 
YLK CL34 CL1 CL 0 0 N N N 9.001  55.920 4.256   8.149  0.167  -2.704 CL34 YLK 36 
YLK N39  N2  N  0 1 N N N 11.466 56.144 -3.423  0.927  -0.499 0.941  N39  YLK 37 
YLK C41  C28 C  0 1 N N S 11.508 58.385 -4.650  0.382  1.929  0.528  C41  YLK 38 
YLK C43  C29 C  0 1 N N N 11.320 59.348 -3.477  1.701  2.080  1.309  C43  YLK 39 
YLK C44  C30 C  0 1 N N N 11.198 60.724 -4.128  1.439  3.270  2.250  C44  YLK 40 
YLK O45  O6  O  0 1 N N N 10.837 60.526 -5.489  0.025  3.353  2.440  O45  YLK 41 
YLK C46  C31 C  0 1 N N R 11.032 59.171 -5.891  -0.647 2.749  1.324  C46  YLK 42 
YLK C48  C32 C  0 1 Y N N 12.668 55.413 -3.640  0.253  -1.759 0.830  C48  YLK 43 
YLK C49  C33 C  0 1 Y N N 13.562 55.668 -4.681  -1.062 -1.782 0.403  C49  YLK 44 
YLK H1   H1  H  0 1 N N N 11.268 60.201 -10.224 0.076  5.789  -1.821 H1   YLK 45 
YLK H2   H2  H  0 1 N N N 12.913 59.940 -9.552  -1.612 5.808  -1.259 H2   YLK 46 
YLK H3   H3  H  0 1 N N N 11.802 58.546 -9.775  -0.294 6.204  -0.130 H3   YLK 47 
YLK H4   H4  H  0 1 N N N 12.170 58.068 -7.372  -1.461 4.716  1.113  H4   YLK 48 
YLK H5   H5  H  0 1 N N N 14.426 58.137 -7.429  -3.194 2.472  1.760  H5   YLK 49 
YLK H6   H6  H  0 1 N N N 16.171 60.260 -7.772  -5.492 2.113  1.095  H6   YLK 50 
YLK H7   H7  H  0 1 N N N 15.744 60.553 -6.052  -5.257 3.087  -0.374 H7   YLK 51 
YLK H8   H8  H  0 1 N N N 17.551 60.064 -4.812  -4.178 2.064  -2.389 H8   YLK 52 
YLK H9   H9  H  0 1 N N N 18.585 58.617 -5.063  -4.859 0.442  -2.663 H9   YLK 53 
YLK H10  H10 H  0 1 N N N 18.654 59.984 -6.227  -5.926 1.789  -2.201 H10  YLK 54 
YLK H11  H11 H  0 1 N N N 16.481 57.517 -8.096  -5.865 0.023  0.949  H11  YLK 55 
YLK H12  H12 H  0 1 N N N 14.571 52.953 -2.162  0.695  -5.090 1.265  H12  YLK 56 
YLK H13  H13 H  0 1 N N N 6.580  56.183 -0.236  6.096  -0.510 2.428  H13  YLK 57 
YLK H14  H14 H  0 1 N N N 6.794  54.420 -0.506  6.231  1.199  1.943  H14  YLK 58 
YLK H15  H15 H  0 1 N N N 7.220  55.778 2.022   7.585  0.661  0.042  H15  YLK 59 
YLK H16  H16 H  0 1 N N N 11.385 55.462 2.890   5.670  -1.102 -3.332 H16  YLK 60 
YLK H17  H17 H  0 1 N N N 11.856 55.077 0.516   3.709  -1.608 -1.949 H17  YLK 61 
YLK H18  H18 H  0 1 N N N 11.583 56.504 -1.395  2.256  0.479  -0.373 H18  YLK 62 
YLK H19  H19 H  0 1 N N N 10.062 57.025 -2.194  1.755  -1.153 -0.877 H19  YLK 63 
YLK H20  H20 H  0 1 N N N 9.838  57.113 -4.305  -0.287 0.249  -0.608 H20  YLK 64 
YLK H21  H21 H  0 1 N N N 11.062 56.465 -5.448  -0.974 0.381  1.035  H21  YLK 65 
YLK H22  H22 H  0 1 N N N 16.347 58.101 -5.686  -3.732 0.590  -0.451 H22  YLK 66 
YLK H23  H23 H  0 1 N N N 18.021 59.347 -8.861  -7.911 -0.287 -0.406 H23  YLK 67 
YLK H24  H24 H  0 1 N N N 19.350 58.541 -7.961  -7.406 1.420  -0.403 H24  YLK 68 
YLK H25  H25 H  0 1 N N N 18.544 57.692 -9.324  -7.082 0.399  -1.824 H25  YLK 69 
YLK H26  H26 H  0 1 N N N 17.230 55.581 -4.784  -3.164 -1.001 -0.546 H26  YLK 70 
YLK H27  H27 H  0 1 N N N 16.078 53.449 -4.046  -1.654 -5.128 0.549  H27  YLK 71 
YLK H28  H28 H  0 1 N N N 10.805 53.303 -2.806  4.113  -3.123 0.830  H28  YLK 72 
YLK H29  H29 H  0 1 N N N 10.686 52.950 -1.049  2.835  -2.972 -0.411 H29  YLK 73 
YLK H30  H30 H  0 1 N N N 8.497  53.718 -2.339  2.392  -0.578 2.496  H30  YLK 74 
YLK H31  H31 H  0 1 N N N 9.057  54.971 -3.498  3.861  -1.552 2.645  H31  YLK 75 
YLK H32  H32 H  0 1 N N N 7.924  56.727 -2.156  4.227  0.791  3.363  H32  YLK 76 
YLK H33  H33 H  0 1 N N N 6.766  55.454 -2.672  3.799  1.357  1.731  H33  YLK 77 
YLK H34  H34 H  0 1 N N N 12.593 58.250 -4.770  0.512  2.340  -0.477 H34  YLK 78 
YLK H35  H35 H  0 1 N N N 10.408 59.102 -2.914  1.902  1.184  1.892  H35  YLK 79 
YLK H36  H36 H  0 1 N N N 12.188 59.313 -2.802  2.522  2.305  0.632  H36  YLK 80 
YLK H37  H37 H  0 1 N N N 12.160 61.254 -4.069  1.933  3.099  3.204  H37  YLK 81 
YLK H38  H38 H  0 1 N N N 10.423 61.313 -3.616  1.807  4.187  1.793  H38  YLK 82 
YLK H39  H39 H  0 1 N N N 10.070 58.744 -6.210  -1.408 2.066  1.719  H39  YLK 83 
YLK H40  H40 H  0 1 N N N 13.315 56.450 -5.384  -1.578 -0.882 0.108  H40  YLK 84 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
YLK C1  O2   SING N N 1  
YLK C14 C12  SING N N 2  
YLK O2  C3   SING N N 3  
YLK O16 S15  DOUB N N 4  
YLK C12 S15  SING N N 5  
YLK C12 C9   SING N N 6  
YLK O20 C19  DOUB N N 7  
YLK C3  C5   SING N N 8  
YLK C3  C46  SING N N 9  
YLK C7  C5   DOUB N Z 10 
YLK C7  C8   SING N N 11 
YLK S15 O17  DOUB N N 12 
YLK S15 N18  SING N N 13 
YLK C5  F6   SING N N 14 
YLK C8  C9   SING N N 15 
YLK C9  C11  SING N N 16 
YLK C19 N18  SING N N 17 
YLK C19 C21  SING N N 18 
YLK C46 O45  SING N N 19 
YLK C46 C41  SING N N 20 
YLK O45 C44  SING N N 21 
YLK C21 C49  DOUB Y N 22 
YLK C21 C22  SING Y N 23 
YLK C49 C48  SING Y N 24 
YLK C41 C40  SING N N 25 
YLK C41 C43  SING N N 26 
YLK C40 N39  SING N N 27 
YLK C44 C43  SING N N 28 
YLK C22 C23  DOUB Y N 29 
YLK C48 N39  SING N N 30 
YLK C48 C24  DOUB Y N 31 
YLK N39 C38  SING N N 32 
YLK C23 C24  SING Y N 33 
YLK C24 O25  SING N N 34 
YLK C28 C29  SING N N 35 
YLK C28 C27  SING N N 36 
YLK C38 C27  SING N N 37 
YLK C29 C30  SING N N 38 
YLK C26 O25  SING N N 39 
YLK C26 C27  SING N N 40 
YLK C27 C37  SING N N 41 
YLK C30 C31  SING N N 42 
YLK C37 C31  DOUB Y N 43 
YLK C37 C36  SING Y N 44 
YLK C31 C32  SING Y N 45 
YLK C36 C35  DOUB Y N 46 
YLK C32 C33  DOUB Y N 47 
YLK C35 C33  SING Y N 48 
YLK C33 CL34 SING N N 49 
YLK C1  H1   SING N N 50 
YLK C1  H2   SING N N 51 
YLK C1  H3   SING N N 52 
YLK C3  H4   SING N N 53 
YLK C7  H5   SING N N 54 
YLK C8  H6   SING N N 55 
YLK C8  H7   SING N N 56 
YLK C11 H8   SING N N 57 
YLK C11 H9   SING N N 58 
YLK C11 H10  SING N N 59 
YLK C12 H11  SING N N 60 
YLK C23 H12  SING N N 61 
YLK C30 H13  SING N N 62 
YLK C30 H14  SING N N 63 
YLK C32 H15  SING N N 64 
YLK C35 H16  SING N N 65 
YLK C36 H17  SING N N 66 
YLK C38 H18  SING N N 67 
YLK C38 H19  SING N N 68 
YLK C40 H20  SING N N 69 
YLK C40 H21  SING N N 70 
YLK C9  H22  SING N N 71 
YLK C14 H23  SING N N 72 
YLK C14 H24  SING N N 73 
YLK C14 H25  SING N N 74 
YLK N18 H26  SING N N 75 
YLK C22 H27  SING N N 76 
YLK C26 H28  SING N N 77 
YLK C26 H29  SING N N 78 
YLK C28 H30  SING N N 79 
YLK C28 H31  SING N N 80 
YLK C29 H32  SING N N 81 
YLK C29 H33  SING N N 82 
YLK C41 H34  SING N N 83 
YLK C43 H35  SING N N 84 
YLK C43 H36  SING N N 85 
YLK C44 H37  SING N N 86 
YLK C44 H38  SING N N 87 
YLK C46 H39  SING N N 88 
YLK C49 H40  SING N N 89 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
YLK SMILES           ACDLabs              12.01 "Clc1cc2CCCC3(CN4CC5CCOC5C(OC)C(F)=CCC(C)C(C)S(=O)(=O)NC(=O)c5cc4c(cc5)OC3)c2cc1"                                                                                                                                                                                            
YLK InChI            InChI                1.06  "InChI=1S/C33H40ClFN2O6S/c1-20-6-10-27(35)31(41-3)30-24(12-14-42-30)17-37-18-33(13-4-5-22-15-25(34)8-9-26(22)33)19-43-29-11-7-23(16-28(29)37)32(38)36-44(39,40)21(20)2/h7-11,15-16,20-21,24,30-31H,4-6,12-14,17-19H2,1-3H3,(H,36,38)/b27-10-/t20-,21+,24-,30+,31-,33-/m0/s1" 
YLK InChIKey         InChI                1.06  ILSUSGXGXIBNOR-FBRKDVJZSA-N                                                                                                                                                                                                                                                  
YLK SMILES_CANONICAL CACTVS               3.385 "CO[C@@H]/1[C@@H]2OCC[C@H]2CN3C[C@@]4(CCCc5cc(Cl)ccc45)COc6ccc(cc36)C(=O)N[S](=O)(=O)[C@H](C)[C@@H](C)C\C=C/1F"                                                                                                                                                              
YLK SMILES           CACTVS               3.385 "CO[CH]1[CH]2OCC[CH]2CN3C[C]4(CCCc5cc(Cl)ccc45)COc6ccc(cc36)C(=O)N[S](=O)(=O)[CH](C)[CH](C)CC=C1F"                                                                                                                                                                           
YLK SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@H]1C/C=C(/[C@@H]([C@H]2[C@@H](CCO2)CN3C[C@@]4(CCCc5c4ccc(c5)Cl)COc6c3cc(cc6)C(=O)NS(=O)(=O)[C@@H]1C)OC)\F"                                                                                                                                                              
YLK SMILES           "OpenEye OEToolkits" 2.0.7 "CC1CC=C(C(C2C(CCO2)CN3CC4(CCCc5c4ccc(c5)Cl)COc6c3cc(cc6)C(=O)NS(=O)(=O)C1C)OC)F"                                                                                                                                                                                            
# 
_pdbx_chem_comp_identifier.comp_id           YLK 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           ACDLabs 
_pdbx_chem_comp_identifier.program_version   12.01 
_pdbx_chem_comp_identifier.identifier        "(1'S,3aS,5R,16R,17S,19Z,21R,21aR)-6'-chloro-20-fluoro-21-methoxy-16,17-dimethyl-2,3,3',3a,4',16,17,18,21,21a-decahydro-2'H,6H,8H-15lambda~6~-spiro[10,12-etheno-15lambda~6~-furo[3,2-i][1,4]oxazepino[3,4-f][1,2,7]thiadiazacyclohexadecine-7,1'-naphthalene]-13,15,15(4H,14H)-trione" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
YLK "Create component" 2023-02-09 RCSB 
YLK "Initial release"  2023-05-17 RCSB 
# 
