data_3KL
#

_chem_comp.id                                   3KL
_chem_comp.name                                 "(5beta,9beta)-3-oxocholan-24-oic acid"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C24 H38 O3"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "3-keto-lithocholic acid"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2013-02-08
_chem_comp.pdbx_modified_date                   2021-03-01
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       374.557
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    3KL
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       3W5Q
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 PDBJ
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
3KL  C2   C2   C  0  1  N  N  N   8.983   1.821  27.144  -4.544   1.719  -0.951  C2   3KL   1  
3KL  C3   C3   C  0  1  N  N  N   9.193   0.267  26.837  -5.301   0.449  -1.274  C3   3KL   2  
3KL  O3   O3   O  0  1  N  N  N   8.250  -0.544  26.815  -6.352   0.488  -1.867  O3   3KL   3  
3KL  C4   C4   C  0  1  N  N  N  10.788  -0.085  26.549  -4.706  -0.870  -0.834  C4   3KL   4  
3KL  C5   C5   C  0  1  N  N  R  11.819   0.388  27.781  -4.366  -0.782   0.658  C5   3KL   5  
3KL  C6   C6   C  0  1  N  N  N  13.414   0.181  27.446  -3.613  -2.051   1.070  C6   3KL   6  
3KL  C1   C1   C  0  1  N  N  N   9.919   2.256  28.343  -4.212   1.718   0.544  C1   3KL   7  
3KL  C7   C7   C  0  1  N  N  N  13.859   1.076  26.167  -2.343  -2.182   0.227  C7   3KL   8  
3KL  C8   C8   C  0  1  N  N  R  13.608   2.641  26.415  -1.447  -0.966   0.459  C8   3KL   9  
3KL  C9   C9   C  0  1  N  N  S  12.042   2.891  26.871  -2.204   0.308   0.051  C9   3KL  10  
3KL  C10  C10  C  0  1  N  N  S  11.511   1.975  28.132  -3.467   0.433   0.902  C10  3KL  11  
3KL  C11  C11  C  0  1  N  N  N  11.758   4.422  26.960  -1.336   1.551   0.215  C11  3KL  12  
3KL  C12  C12  C  0  1  N  N  N  12.080   5.245  25.664  -0.012   1.415  -0.556  C12  3KL  13  
3KL  C13  C13  C  0  1  N  N  R  13.571   5.044  25.160   0.685   0.171  -0.041  C13  3KL  14  
3KL  C14  C14  C  0  1  N  N  S  13.879   3.480  25.082  -0.205  -1.047  -0.408  C14  3KL  15  
3KL  C15  C15  C  0  1  N  N  N  15.392   3.489  24.535   0.738  -2.220  -0.118  C15  3KL  16  
3KL  C16  C16  C  0  1  N  N  N  15.146   4.353  23.346   2.097  -1.719  -0.680  C16  3KL  17  
3KL  C17  C17  C  0  1  N  N  R  13.946   5.393  23.662   2.027  -0.172  -0.678  C17  3KL  18  
3KL  C18  C18  C  0  1  N  N  N  14.556   5.802  26.275   0.841   0.257   1.479  C18  3KL  19  
3KL  C19  C19  C  0  1  N  N  N  12.112   2.395  29.418  -3.077   0.485   2.381  C19  3KL  20  
3KL  C20  C20  C  0  1  N  N  R  14.400   6.927  23.322   3.172   0.409   0.154  C20  3KL  21  
3KL  C21  C21  C  0  1  N  N  N  13.189   7.946  23.638   3.064   1.935   0.174  C21  3KL  22  
3KL  C22  C22  C  0  1  N  N  N  14.749   6.971  21.840   4.510   0.000  -0.463  C22  3KL  23  
3KL  C23  C23  C  0  1  N  N  N  15.239   8.291  21.206   5.653   0.475   0.437  C23  3KL  24  
3KL  C24  C24  C  0  1  N  N  N  15.602   8.156  19.749   6.972   0.072  -0.172  C24  3KL  25  
3KL  OT1  OT1  O  0  1  N  N  N  16.367   9.010  19.282   8.121   0.385   0.448  OT1  3KL  26  
3KL  OT2  OT2  O  0  1  N  N  N  15.166   7.183  19.059   6.995  -0.533  -1.218  OT2  3KL  27  
3KL  H1   H1   H  0  1  N  N  N   9.237   2.409  26.249  -3.622   1.754  -1.532  H1   3KL  28  
3KL  H2   H2   H  0  1  N  N  N   7.932   2.002  27.415  -5.161   2.585  -1.190  H2   3KL  29  
3KL  H3   H3   H  0  1  N  N  N  10.884  -1.173  26.415  -5.428  -1.670  -0.998  H3   3KL  30  
3KL  H4   H4   H  0  1  N  N  N  11.095   0.427  25.625  -3.799  -1.070  -1.405  H4   3KL  31  
3KL  H5   H5   H  0  1  N  N  N  11.576  -0.211  28.671  -5.283  -0.682   1.239  H5   3KL  32  
3KL  H6   H6   H  0  1  N  N  N  13.601  -0.880  27.225  -3.345  -1.989   2.125  H6   3KL  33  
3KL  H7   H7   H  0  1  N  N  N  14.008   0.483  28.321  -4.250  -2.921   0.908  H7   3KL  34  
3KL  H8   H8   H  0  1  N  N  N   9.784   3.336  28.503  -3.585   2.578   0.777  H8   3KL  35  
3KL  H9   H9   H  0  1  N  N  N   9.595   1.709  29.241  -5.135   1.775   1.121  H9   3KL  36  
3KL  H10  H10  H  0  1  N  N  N  13.277   0.757  25.290  -1.808  -3.087   0.514  H10  3KL  37  
3KL  H11  H11  H  0  1  N  N  N  14.930   0.914  25.975  -2.612  -2.239  -0.828  H11  3KL  38  
3KL  H12  H12  H  0  1  N  N  N  14.273   2.997  27.215  -1.172  -0.908   1.512  H12  3KL  39  
3KL  H13  H13  H  0  1  N  N  N  11.451   2.540  26.013  -2.503   0.221  -0.994  H13  3KL  40  
3KL  H14  H14  H  0  1  N  N  N  12.364   4.832  27.781  -1.880   2.418  -0.160  H14  3KL  41  
3KL  H15  H15  H  0  1  N  N  N  10.691   4.556  27.190  -1.119   1.697   1.273  H15  3KL  42  
3KL  H16  H16  H  0  1  N  N  N  11.923   6.312  25.878  -0.212   1.313  -1.622  H16  3KL  43  
3KL  H17  H17  H  0  1  N  N  N  11.394   4.926  24.866   0.612   2.291  -0.378  H17  3KL  44  
3KL  H18  H18  H  0  1  N  N  N  13.245   3.056  24.289  -0.477  -1.016  -1.464  H18  3KL  45  
3KL  H19  H19  H  0  1  N  N  N  15.747   2.485  24.260   0.808  -2.402   0.954  H19  3KL  46  
3KL  H20  H20  H  0  1  N  N  N  16.095   3.944  25.248   0.409  -3.118  -0.641  H20  3KL  47  
3KL  H21  H21  H  0  1  N  N  N  14.867   3.723  22.488   2.914  -2.057  -0.043  H21  3KL  48  
3KL  H22  H22  H  0  1  N  N  N  16.062   4.914  23.106   2.238  -2.086  -1.697  H22  3KL  49  
3KL  H23  H23  H  0  1  N  N  N  13.092   5.139  23.017   2.070   0.209  -1.698  H23  3KL  50  
3KL  H24  H24  H  0  1  N  N  N  14.245   5.520  27.292  -0.140   0.380   1.938  H24  3KL  51  
3KL  H25  H25  H  0  1  N  N  N  15.599   5.494  26.112   1.304  -0.657   1.849  H25  3KL  52  
3KL  H26  H26  H  0  1  N  N  N  14.473   6.892  26.156   1.470   1.111   1.731  H26  3KL  53  
3KL  H27  H27  H  0  1  N  N  N  11.729   1.757  30.228  -2.540  -0.426   2.647  H27  3KL  54  
3KL  H28  H28  H  0  1  N  N  N  13.206   2.297  29.361  -2.437   1.349   2.558  H28  3KL  55  
3KL  H29  H29  H  0  1  N  N  N  11.848   3.443  29.621  -3.976   0.568   2.991  H29  3KL  56  
3KL  H30  H30  H  0  1  N  N  N  15.273   7.192  23.936   3.110   0.027   1.173  H30  3KL  57  
3KL  H31  H31  H  0  1  N  N  N  12.946   7.906  24.710   2.111   2.227   0.614  H31  3KL  58  
3KL  H32  H32  H  0  1  N  N  N  13.491   8.969  23.369   3.880   2.349   0.767  H32  3KL  59  
3KL  H33  H33  H  0  1  N  N  N  12.305   7.658  23.050   3.126   2.317  -0.845  H33  3KL  60  
3KL  H34  H34  H  0  1  N  N  N  13.845   6.670  21.291   4.550  -1.085  -0.559  H34  3KL  61  
3KL  H35  H35  H  0  1  N  N  N  15.542   6.226  21.677   4.610   0.456  -1.448  H35  3KL  62  
3KL  H36  H36  H  0  1  N  N  N  16.128   8.634  21.757   5.614   1.560   0.532  H36  3KL  63  
3KL  H37  H37  H  0  1  N  N  N  14.439   9.040  21.298   5.553   0.019   1.422  H37  3KL  64  
3KL  H38  H38  H  0  1  N  N  N  16.550   8.808  18.372   8.941   0.105   0.020  H38  3KL  65  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
3KL  OT2  C24  DOUB  N  N   1  
3KL  OT1  C24  SING  N  N   2  
3KL  C24  C23  SING  N  N   3  
3KL  C23  C22  SING  N  N   4  
3KL  C22  C20  SING  N  N   5  
3KL  C20  C21  SING  N  N   6  
3KL  C20  C17  SING  N  N   7  
3KL  C16  C17  SING  N  N   8  
3KL  C16  C15  SING  N  N   9  
3KL  C17  C13  SING  N  N  10  
3KL  C15  C14  SING  N  N  11  
3KL  C14  C13  SING  N  N  12  
3KL  C14  C8   SING  N  N  13  
3KL  C13  C12  SING  N  N  14  
3KL  C13  C18  SING  N  N  15  
3KL  C12  C11  SING  N  N  16  
3KL  C7   C8   SING  N  N  17  
3KL  C7   C6   SING  N  N  18  
3KL  C8   C9   SING  N  N  19  
3KL  C4   C3   SING  N  N  20  
3KL  C4   C5   SING  N  N  21  
3KL  O3   C3   DOUB  N  N  22  
3KL  C3   C2   SING  N  N  23  
3KL  C9   C11  SING  N  N  24  
3KL  C9   C10  SING  N  N  25  
3KL  C2   C1   SING  N  N  26  
3KL  C6   C5   SING  N  N  27  
3KL  C5   C10  SING  N  N  28  
3KL  C10  C1   SING  N  N  29  
3KL  C10  C19  SING  N  N  30  
3KL  C2   H1   SING  N  N  31  
3KL  C2   H2   SING  N  N  32  
3KL  C4   H3   SING  N  N  33  
3KL  C4   H4   SING  N  N  34  
3KL  C5   H5   SING  N  N  35  
3KL  C6   H6   SING  N  N  36  
3KL  C6   H7   SING  N  N  37  
3KL  C1   H8   SING  N  N  38  
3KL  C1   H9   SING  N  N  39  
3KL  C7   H10  SING  N  N  40  
3KL  C7   H11  SING  N  N  41  
3KL  C8   H12  SING  N  N  42  
3KL  C9   H13  SING  N  N  43  
3KL  C11  H14  SING  N  N  44  
3KL  C11  H15  SING  N  N  45  
3KL  C12  H16  SING  N  N  46  
3KL  C12  H17  SING  N  N  47  
3KL  C14  H18  SING  N  N  48  
3KL  C15  H19  SING  N  N  49  
3KL  C15  H20  SING  N  N  50  
3KL  C16  H21  SING  N  N  51  
3KL  C16  H22  SING  N  N  52  
3KL  C17  H23  SING  N  N  53  
3KL  C18  H24  SING  N  N  54  
3KL  C18  H25  SING  N  N  55  
3KL  C18  H26  SING  N  N  56  
3KL  C19  H27  SING  N  N  57  
3KL  C19  H28  SING  N  N  58  
3KL  C19  H29  SING  N  N  59  
3KL  C20  H30  SING  N  N  60  
3KL  C21  H31  SING  N  N  61  
3KL  C21  H32  SING  N  N  62  
3KL  C21  H33  SING  N  N  63  
3KL  C22  H34  SING  N  N  64  
3KL  C22  H35  SING  N  N  65  
3KL  C23  H36  SING  N  N  66  
3KL  C23  H37  SING  N  N  67  
3KL  OT1  H38  SING  N  N  68  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
3KL  SMILES            ACDLabs               12.01  "O=C(O)CCC(C1CCC2C1(C)CCC4C2CCC3CC(=O)CCC34C)C"  
3KL  InChI             InChI                 1.03   "InChI=1S/C24H38O3/c1-15(4-9-22(26)27)19-7-8-20-18-6-5-16-14-17(25)10-12-23(16,2)21(18)11-13-24(19,20)3/h15-16,18-21H,4-14H2,1-3H3,(H,26,27)/t15-,16-,18+,19-,20+,21+,23+,24-/m1/s1"  
3KL  InChIKey          InChI                 1.03   KIQFUORWRVZTHT-OPTMKGCMSA-N  
3KL  SMILES_CANONICAL  CACTVS                3.370  "C[C@H](CCC(O)=O)[C@H]1CC[C@H]2[C@@H]3CC[C@@H]4CC(=O)CC[C@]4(C)[C@H]3CC[C@]12C"  
3KL  SMILES            CACTVS                3.370  "C[CH](CCC(O)=O)[CH]1CC[CH]2[CH]3CC[CH]4CC(=O)CC[C]4(C)[CH]3CC[C]12C"  
3KL  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.6  "C[C@H](CCC(=O)O)[C@H]1CC[C@@H]2[C@@]1(CC[C@H]3[C@H]2CC[C@H]4[C@@]3(CCC(=O)C4)C)C"  
3KL  SMILES            "OpenEye OEToolkits"  1.7.6  "CC(CCC(=O)O)C1CCC2C1(CCC3C2CCC4C3(CCC(=O)C4)C)C"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
3KL  "SYSTEMATIC NAME"  ACDLabs               12.01  "(5beta,9beta)-3-oxocholan-24-oic acid"  
3KL  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.7.6  "(4R)-4-[(5R,8R,9S,10S,13R,14S,17R)-10,13-dimethyl-3-oxidanylidene-1,2,4,5,6,7,8,9,11,12,14,15,16,17-tetradecahydrocyclopenta[a]phenanthren-17-yl]pentanoic acid"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
3KL  "Create component"  2013-02-08  PDBJ  
3KL  "Initial release"   2013-06-26  RCSB  
3KL  "Modify synonyms"   2021-03-01  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     3KL
_pdbx_chem_comp_synonyms.name        "3-keto-lithocholic acid"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
