data_3ZL
# 
_chem_comp.id                                    3ZL 
_chem_comp.name                                  "N~6~-[(1Z)-4-amino-3-oxopenta-1,4-dien-1-yl]-L-lysine" 
_chem_comp.type                                  "L-peptide linking" 
_chem_comp.pdbx_type                             ATOMP 
_chem_comp.formula                               "C11 H19 N3 O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2014-12-15 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        241.287 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     3ZL 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4WY0 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              N 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
3ZL C1  C1  C 0 1 N N N N N N -43.499 -48.074 -55.182 -2.813 1.690  0.250  C1  3ZL 1  
3ZL C2  C2  C 0 1 N N N N N N -43.285 -48.507 -53.927 -4.056 1.160  0.245  C2  3ZL 2  
3ZL C3  C3  C 0 1 N N N N N N -42.081 -49.155 -53.355 -4.234 -0.221 0.004  C3  3ZL 3  
3ZL C4  C4  C 0 1 N N N N N N -42.043 -49.565 -51.946 -5.596 -0.778 -0.131 C4  3ZL 4  
3ZL C5  C5  C 0 1 N N N N N N -42.889 -49.125 -51.028 -6.659 0.024  -0.024 C5  3ZL 5  
3ZL N14 N1  N 0 1 N N N N N N -41.053 -50.497 -51.547 -5.772 -2.144 -0.370 N14 3ZL 6  
3ZL N   N2  N 0 1 N N N N N N -41.121 -50.198 -61.823 4.754  1.313  -0.945 N   3ZL 7  
3ZL CA  C6  C 0 1 N N S N N N -41.829 -48.930 -61.696 4.507  0.370  0.154  CA  3ZL 8  
3ZL CB  C7  C 0 1 N N N N N N -41.203 -48.123 -60.544 3.098  -0.212 0.020  CB  3ZL 9  
3ZL CG  C8  C 0 1 N N N N N N -41.538 -48.740 -59.178 2.066  0.902  0.203  CG  3ZL 10 
3ZL CD  C9  C 0 1 N N N N N N -40.947 -47.995 -57.978 0.658  0.320  0.069  CD  3ZL 11 
3ZL CE  C10 C 0 1 N N N N N N -41.407 -48.553 -56.615 -0.375 1.435  0.252  CE  3ZL 12 
3ZL NZ  N3  N 0 1 N N N N N N -42.758 -48.082 -56.313 -1.723 0.877  0.123  NZ  3ZL 13 
3ZL C   C11 C 0 1 N N N N N N -41.853 -48.135 -62.983 5.519  -0.745 0.097  C   3ZL 14 
3ZL O   O1  O 0 1 N N N N N N -40.880 -48.155 -63.746 6.114  -0.969 -0.931 O   3ZL 15 
3ZL O13 O2  O 0 1 N N N N N N -41.098 -49.387 -54.026 -3.265 -0.952 -0.093 O13 3ZL 16 
3ZL O1  O3  O 0 1 N Y N N N N -42.979 -47.458 -63.247 5.759  -1.490 1.187  O1  3ZL 17 
3ZL H1  H1  H 0 1 N N N N N N -44.471 -47.623 -55.315 -2.682 2.758  0.350  H1  3ZL 18 
3ZL H2  H2  H 0 1 N N N N N N -44.105 -48.362 -53.240 -4.914 1.791  0.426  H2  3ZL 19 
3ZL H4  H4  H 0 1 N N N N N N -42.812 -49.477 -50.010 -7.654 -0.383 -0.123 H4  3ZL 20 
3ZL H5  H5  H 0 1 N N N N N N -43.656 -48.414 -51.297 -6.523 1.079  0.160  H5  3ZL 21 
3ZL H6  H6  H 0 1 N N N N N N -41.145 -50.683 -50.569 -5.000 -2.726 -0.447 H6  3ZL 22 
3ZL H7  H7  H 0 1 N N N N N N -41.170 -51.347 -52.060 -6.666 -2.509 -0.458 H7  3ZL 23 
3ZL H8  H8  H 0 1 N N N N N N -41.137 -50.678 -60.946 4.678  0.853  -1.840 H8  3ZL 24 
3ZL H9  H9  H 0 1 N N N N N N -41.567 -50.760 -62.519 4.129  2.103  -0.891 H9  3ZL 25 
3ZL H11 H11 H 0 1 N N N N N N -42.872 -49.143 -61.417 4.595  0.892  1.107  H11 3ZL 26 
3ZL H12 H12 H 0 1 N N N N N N -40.110 -48.107 -60.671 2.981  -0.657 -0.968 H12 3ZL 27 
3ZL H13 H13 H 0 1 N N N N N N -41.591 -47.094 -60.576 2.947  -0.976 0.782  H13 3ZL 28 
3ZL H14 H14 H 0 1 N N N N N N -42.632 -48.754 -59.067 2.183  1.347  1.191  H14 3ZL 29 
3ZL H15 H15 H 0 1 N N N N N N -41.155 -49.771 -59.164 2.218  1.667  -0.559 H15 3ZL 30 
3ZL H16 H16 H 0 1 N N N N N N -39.851 -48.066 -58.030 0.541  -0.124 -0.920 H16 3ZL 31 
3ZL H17 H17 H 0 1 N N N N N N -41.249 -46.939 -58.041 0.506  -0.444 0.831  H17 3ZL 32 
3ZL H18 H18 H 0 1 N N N N N N -41.404 -49.652 -56.652 -0.258 1.879  1.240  H18 3ZL 33 
3ZL H19 H19 H 0 1 N N N N N N -40.717 -48.210 -55.829 -0.223 2.199  -0.511 H19 3ZL 34 
3ZL H20 H20 H 0 1 N N N N N N -42.731 -47.118 -56.578 -1.842 -0.069 -0.052 H20 3ZL 35 
3ZL H21 H21 H 0 1 N Y N N N N -42.896 -47.019 -64.085 6.417  -2.194 1.102  H21 3ZL 36 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
3ZL O   C   DOUB N N 1  
3ZL C   CA  SING N N 2  
3ZL N   CA  SING N N 3  
3ZL CA  CB  SING N N 4  
3ZL CB  CG  SING N N 5  
3ZL CG  CD  SING N N 6  
3ZL CD  CE  SING N N 7  
3ZL CE  NZ  SING N N 8  
3ZL NZ  C1  SING N N 9  
3ZL C1  C2  DOUB N Z 10 
3ZL O13 C3  DOUB N N 11 
3ZL C2  C3  SING N N 12 
3ZL C3  C4  SING N N 13 
3ZL C4  N14 SING N N 14 
3ZL C4  C5  DOUB N N 15 
3ZL C   O1  SING N N 16 
3ZL C1  H1  SING N N 17 
3ZL C2  H2  SING N N 18 
3ZL C5  H4  SING N N 19 
3ZL C5  H5  SING N N 20 
3ZL N14 H6  SING N N 21 
3ZL N14 H7  SING N N 22 
3ZL N   H8  SING N N 23 
3ZL N   H9  SING N N 24 
3ZL CA  H11 SING N N 25 
3ZL CB  H12 SING N N 26 
3ZL CB  H13 SING N N 27 
3ZL CG  H14 SING N N 28 
3ZL CG  H15 SING N N 29 
3ZL CD  H16 SING N N 30 
3ZL CD  H17 SING N N 31 
3ZL CE  H18 SING N N 32 
3ZL CE  H19 SING N N 33 
3ZL NZ  H20 SING N N 34 
3ZL O1  H21 SING N N 35 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
3ZL SMILES           ACDLabs              12.01 "O=C(O)C(N)CCCCN/C=C\C(=O)C(=C)/N"                                                                                  
3ZL InChI            InChI                1.03  "InChI=1S/C11H19N3O3/c1-8(12)10(15)5-7-14-6-3-2-4-9(13)11(16)17/h5,7,9,14H,1-4,6,12-13H2,(H,16,17)/b7-5-/t9-/m0/s1" 
3ZL InChIKey         InChI                1.03  HDSUFAZLYUUHFR-PGBBXKAQSA-N                                                                                         
3ZL SMILES_CANONICAL CACTVS               3.385 "N[C@@H](CCCCN\C=C/C(=O)C(N)=C)C(O)=O"                                                                              
3ZL SMILES           CACTVS               3.385 "N[CH](CCCCNC=CC(=O)C(N)=C)C(O)=O"                                                                                  
3ZL SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "C=C(C(=O)/C=C\NCCCC[C@@H](C(=O)O)N)N"                                                                              
3ZL SMILES           "OpenEye OEToolkits" 1.9.2 "C=C(C(=O)C=CNCCCCC(C(=O)O)N)N"                                                                                     
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
3ZL "SYSTEMATIC NAME" ACDLabs              12.01 "N~6~-[(1Z)-4-amino-3-oxopenta-1,4-dien-1-yl]-L-lysine"                                
3ZL "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "(2S)-2-azanyl-6-[[(1Z)-4-azanyl-3-oxidanylidene-penta-1,4-dienyl]amino]hexanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
3ZL "Create component" 2014-12-15 RCSB 
3ZL "Initial release"  2015-01-14 RCSB 
3ZL "Modify PCM"       2024-09-27 PDBE 
# 
