data_5OL
# 
_chem_comp.id                                    5OL 
_chem_comp.name                                  "N~6~-(1,1-dihydroxyethyl)-L-lysine" 
_chem_comp.type                                  "L-peptide linking" 
_chem_comp.pdbx_type                             ATOMP 
_chem_comp.formula                               "C8 H18 N2 O4" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2015-10-29 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        206.240 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     5OL 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        5EFN 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
5OL CA  CA  C 0 1 N N S Y N N 6.145 16.445 -1.748 3.204  -0.299 -0.501 CA  5OL 1  
5OL N   N   N 0 1 N N N Y Y N 6.767 17.080 -2.872 3.211  -1.759 -0.342 N   5OL 2  
5OL C   C   C 0 1 N N N Y N Y 6.544 17.174 -0.491 4.496  0.270  0.027  C   5OL 3  
5OL O   O   O 0 1 N N N Y N Y 5.687 17.319 0.429  5.169  -0.373 0.797  O   5OL 4  
5OL C03 C03 C 0 1 N N N N N N 6.549 14.991 -1.668 2.029  0.293  0.280  C03 5OL 5  
5OL C04 C04 C 0 1 N N N N N N 5.878 14.254 -0.526 0.713  -0.188 -0.335 C04 5OL 6  
5OL C05 C05 C 0 1 N N N N N N 6.142 12.754 -0.571 -0.461 0.404  0.446  C05 5OL 7  
5OL C06 C06 C 0 1 N N N N N N 5.499 11.935 0.541  -1.777 -0.077 -0.170 C06 5OL 8  
5OL N07 N07 N 0 1 N N N N N N 5.982 10.590 0.494  -2.905 0.492  0.580  N07 5OL 9  
5OL C08 C08 C 0 1 N N N N N N 5.330 9.680  1.383  -4.188 0.051  0.016  C08 5OL 10 
5OL O02 O02 O 0 1 N N N N N N 5.222 10.174 2.710  -4.281 0.477  -1.345 O02 5OL 11 
5OL O01 O01 O 0 1 N N N N N N 4.057 9.362  0.859  -4.270 -1.375 0.076  O01 5OL 12 
5OL C11 C11 C 0 1 N N N N N N 6.189 8.443  1.402  -5.336 0.662  0.822  C11 5OL 13 
5OL OXT OXT O 0 1 N Y N Y N Y 7.803 17.630 -0.463 4.898  1.491  -0.359 OXT 5OL 14 
5OL HA  H1  H 0 1 N N N Y N N 5.051 16.499 -1.853 3.101  -0.049 -1.557 H1  5OL 15 
5OL H2  H2  H 0 1 N Y N Y Y N 6.489 18.040 -2.909 3.306  -2.017 0.629  H2  5OL 16 
5OL H   H3  H 0 1 N N N Y Y N 7.761 17.025 -2.778 2.384  -2.171 -0.747 H3  5OL 17 
5OL H5  H5  H 0 1 N N N N N N 6.275 14.498 -2.613 2.084  -0.031 1.320  H5  5OL 18 
5OL H6  H6  H 0 1 N N N N N N 7.639 14.937 -1.528 2.075  1.381  0.236  H6  5OL 19 
5OL H7  H7  H 0 1 N N N N N N 6.261 14.652 0.425  0.659  0.136  -1.375 H7  5OL 20 
5OL H8  H8  H 0 1 N N N N N N 4.793 14.424 -0.584 0.668  -1.276 -0.291 H8  5OL 21 
5OL H9  H9  H 0 1 N N N N N N 5.765 12.373 -1.532 -0.407 0.080  1.485  H9  5OL 22 
5OL H10 H10 H 0 1 N N N N N N 7.230 12.601 -0.517 -0.416 1.492  0.402  H10 5OL 23 
5OL H11 H11 H 0 1 N N N N N N 5.752 12.380 1.515  -1.832 0.247  -1.209 H11 5OL 24 
5OL H12 H12 H 0 1 N N N N N N 4.407 11.935 0.410  -1.823 -1.165 -0.125 H12 5OL 25 
5OL H13 H13 H 0 1 N N N N N N 5.863 10.250 -0.439 -2.842 0.259  1.560  H13 5OL 26 
5OL H15 H15 H 0 1 N N N N N N 4.783 9.530  3.253  -4.233 1.435  -1.461 H15 5OL 27 
5OL H16 H16 H 0 1 N N N N N N 3.616 8.757  1.444  -4.213 -1.735 0.972  H16 5OL 28 
5OL H17 H17 H 0 1 N N N N N N 5.741 7.695  2.073  -5.274 1.749  0.776  H17 5OL 29 
5OL H18 H18 H 0 1 N N N N N N 6.258 8.029  0.385  -6.288 0.334  0.403  H18 5OL 30 
5OL H19 H19 H 0 1 N N N N N N 7.196 8.701  1.762  -5.265 0.337  1.860  H19 5OL 31 
5OL HXT H20 H 0 1 N Y N Y N Y 7.958 18.083 0.358  5.733  1.814  0.007  H20 5OL 32 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
5OL N   CA  SING N N 1  
5OL CA  C03 SING N N 2  
5OL CA  C   SING N N 3  
5OL C03 C04 SING N N 4  
5OL C05 C04 SING N N 5  
5OL C05 C06 SING N N 6  
5OL C   O   DOUB N N 7  
5OL N07 C06 SING N N 8  
5OL N07 C08 SING N N 9  
5OL O01 C08 SING N N 10 
5OL C08 C11 SING N N 11 
5OL C08 O02 SING N N 12 
5OL C   OXT SING N N 13 
5OL CA  HA  SING N N 14 
5OL N   H2  SING N N 15 
5OL N   H   SING N N 16 
5OL C03 H5  SING N N 17 
5OL C03 H6  SING N N 18 
5OL C04 H7  SING N N 19 
5OL C04 H8  SING N N 20 
5OL C05 H9  SING N N 21 
5OL C05 H10 SING N N 22 
5OL C06 H11 SING N N 23 
5OL C06 H12 SING N N 24 
5OL N07 H13 SING N N 25 
5OL O02 H15 SING N N 26 
5OL O01 H16 SING N N 27 
5OL C11 H17 SING N N 28 
5OL C11 H18 SING N N 29 
5OL C11 H19 SING N N 30 
5OL OXT HXT SING N N 31 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
5OL SMILES           ACDLabs              12.01 "C(CCCCNC(C)(O)O)(C(=O)O)N"                                                                         
5OL InChI            InChI                1.03  "InChI=1S/C8H18N2O4/c1-8(13,14)10-5-3-2-4-6(9)7(11)12/h6,10,13-14H,2-5,9H2,1H3,(H,11,12)/t6-/m0/s1" 
5OL InChIKey         InChI                1.03  VPMDIAZXPVLBIV-LURJTMIESA-N                                                                         
5OL SMILES_CANONICAL CACTVS               3.385 "CC(O)(O)NCCCC[C@H](N)C(O)=O"                                                                       
5OL SMILES           CACTVS               3.385 "CC(O)(O)NCCCC[CH](N)C(O)=O"                                                                        
5OL SMILES_CANONICAL "OpenEye OEToolkits" 2.0.4 "CC(NCCCC[C@@H](C(=O)O)N)(O)O"                                                                      
5OL SMILES           "OpenEye OEToolkits" 2.0.4 "CC(NCCCCC(C(=O)O)N)(O)O"                                                                           
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
5OL "SYSTEMATIC NAME" ACDLabs              12.01 "N~6~-(1,1-dihydroxyethyl)-L-lysine"                            
5OL "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.4 "(2~{S})-2-azanyl-6-[1,1-bis(oxidanyl)ethylamino]hexanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
5OL "Create component" 2015-10-29 RCSB 
5OL "Modify atom id"   2016-02-18 RCSB 
5OL "Initial release"  2016-07-27 RCSB 
5OL "Modify backbone"  2023-11-03 PDBE 
5OL "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            5OL 
_pdbx_chem_comp_pcm.modified_residue_id                LYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Non-standard residue" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               ? 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   ? 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
