data_A1AML
# 
_chem_comp.id                                    A1AML 
_chem_comp.name                                  "6-{(1S)-2-methyl-1-[(7H-pyrrolo[2,3-d]pyrimidin-4-yl)amino]propyl}-2,3-dihydro-4H-1,4lambda~6~-benzoxathiine-4,4-dione" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C18 H20 N4 O3 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2024-04-11 
_chem_comp.pdbx_modified_date                    2024-05-10 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        372.441 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     A1AML 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7H0J 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
A1AML N1  N1  N 0 1 Y N N N N N -10.369 -7.372  18.960 -3.225 -1.331 0.674  N1  A1AML 1  
A1AML N3  N2  N 0 1 Y N N N N N -14.265 -8.408  19.365 -6.139 1.488  0.692  N3  A1AML 2  
A1AML C4  C1  C 0 1 Y N N N N N -10.798 -8.604  18.612 -3.027 -0.131 0.137  C4  A1AML 3  
A1AML C5  C2  C 0 1 Y N N N N N -11.272 -6.513  19.461 -4.380 -1.646 1.232  C5  A1AML 4  
A1AML C6  C3  C 0 1 Y N N N N N -12.992 -7.928  19.292 -5.291 0.418  0.782  C6  A1AML 5  
A1AML C7  C4  C 0 1 Y N N N N N -14.265 -9.693  18.873 -5.515 2.530  0.056  C7  A1AML 6  
A1AML C8  C5  C 0 1 Y N N N N N -13.014 -10.049 18.487 -4.264 2.173  -0.280 C8  A1AML 7  
A1AML C10 C6  C 0 1 Y N N N N N -8.436  -9.062  16.219 0.592  -0.075 -0.572 C10 A1AML 8  
A1AML C13 C7  C 0 1 Y N N N N N -8.306  -8.790  13.425 3.044  1.226  -0.759 C13 A1AML 9  
A1AML C15 C8  C 0 1 Y N N N N N -8.926  -10.062 15.392 1.681  -0.533 0.146  C15 A1AML 10 
A1AML C17 C9  C 0 1 N N N N N N -8.169  -9.661  11.232 5.231  1.865  0.073  C17 A1AML 11 
A1AML O1  O1  O 0 1 N N N N N N -8.908  -12.387 13.236 3.995  -0.015 2.333  O1  A1AML 12 
A1AML S   S1  S 0 1 N N N N N N -9.606  -11.143 13.041 4.259  -0.475 1.015  S   A1AML 13 
A1AML O   O2  O 0 1 N N N N N N -11.010 -11.149 13.264 4.327  -1.863 0.718  O   A1AML 14 
A1AML C16 C10 C 0 1 N N N N N N -9.315  -10.561 11.413 5.678  0.410  0.295  C16 A1AML 15 
A1AML O2  O3  O 0 1 N N N N N N -8.198  -8.541  12.077 4.210  1.892  -0.913 O2  A1AML 16 
A1AML C12 C11 C 0 1 Y N N N N N -7.794  -7.818  14.249 1.939  1.686  -1.475 C12 A1AML 17 
A1AML C11 C12 C 0 1 Y N N N N N -7.882  -7.934  15.628 0.725  1.039  -1.380 C11 A1AML 18 
A1AML C14 C13 C 0 1 Y N N N N N -8.888  -9.924  14.005 2.897  0.117  0.058  C14 A1AML 19 
A1AML C3  C14 C 0 1 N N S N N N -8.528  -9.183  17.729 -0.731 -0.789 -0.479 C3  A1AML 20 
A1AML C1  C15 C 0 1 N N N N N N -7.547  -10.247 18.294 -0.905 -1.701 -1.695 C1  A1AML 21 
A1AML C2  C16 C 0 1 N N N N N N -6.121  -9.983  17.842 0.228  -2.728 -1.729 C2  A1AML 22 
A1AML C   C17 C 0 1 N N N N N N -7.622  -10.348 19.838 -2.249 -2.427 -1.600 C   A1AML 23 
A1AML N   N3  N 0 1 N N N N N N -9.897  -9.503  18.134 -1.816 0.194  -0.446 N   A1AML 24 
A1AML C9  C18 C 0 1 Y N N N N N -12.175 -8.935  18.752 -4.079 0.798  0.178  C9  A1AML 25 
A1AML N2  N4  N 0 1 Y N N N N N -12.588 -6.695  19.669 -5.392 -0.808 1.291  N2  A1AML 26 
A1AML H1  H1  H 0 1 N N N N N N -15.060 -7.913  19.715 -7.049 1.507  1.028  H1  A1AML 27 
A1AML H10 H2  H 0 1 N N N N N N -10.888 -5.541  19.735 -4.499 -2.632 1.655  H10 A1AML 28 
A1AML H11 H3  H 0 1 N N N N N N -15.136 -10.327 18.804 -5.961 3.492  -0.146 H11 A1AML 29 
A1AML H12 H4  H 0 1 N N N N N N -12.715 -10.995 18.061 -3.536 2.785  -0.791 H12 A1AML 30 
A1AML H15 H5  H 0 1 N N N N N N -9.342  -10.958 15.828 1.581  -1.402 0.778  H15 A1AML 31 
A1AML H18 H6  H 0 1 N N N N N N -7.247  -10.226 11.434 4.846  2.274  1.008  H18 A1AML 32 
A1AML H19 H7  H 0 1 N N N N N N -8.163  -9.310  10.189 6.080  2.460  -0.263 H19 A1AML 33 
A1AML H16 H8  H 0 1 N N N N N N -9.156  -11.438 10.768 5.956  -0.043 -0.657 H16 A1AML 34 
A1AML H17 H9  H 0 1 N N N N N N -10.217 -10.023 11.085 6.523  0.381  0.983  H17 A1AML 35 
A1AML H14 H10 H 0 1 N N N N N N -7.316  -6.951  13.817 2.034  2.555  -2.109 H14 A1AML 36 
A1AML H13 H11 H 0 1 N N N N N N -7.514  -7.134  16.253 -0.124 1.403  -1.939 H13 A1AML 37 
A1AML H   H12 H 0 1 N N N N N N -8.250  -8.212  18.165 -0.757 -1.389 0.431  H   A1AML 38 
A1AML H5  H13 H 0 1 N N N N N N -7.852  -11.222 17.886 -0.880 -1.101 -2.605 H5  A1AML 39 
A1AML H7  H14 H 0 1 N N N N N N -6.090  -9.915  16.745 0.202  -3.328 -0.819 H7  A1AML 40 
A1AML H6  H15 H 0 1 N N N N N N -5.768  -9.037  18.278 0.104  -3.378 -2.596 H6  A1AML 41 
A1AML H8  H16 H 0 1 N N N N N N -5.472  -10.806 18.177 1.185  -2.211 -1.797 H8  A1AML 42 
A1AML H2  H17 H 0 1 N N N N N N -8.661  -10.539 20.143 -3.056 -1.694 -1.576 H2  A1AML 43 
A1AML H3  H18 H 0 1 N N N N N N -6.981  -11.173 20.183 -2.373 -3.076 -2.467 H3  A1AML 44 
A1AML H4  H19 H 0 1 N N N N N N -7.276  -9.404  20.284 -2.275 -3.026 -0.690 H4  A1AML 45 
A1AML H9  H20 H 0 1 N N N N N N -10.326 -9.908  17.327 -1.685 1.074  -0.834 H9  A1AML 46 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
A1AML C   C1  SING N N 1  
A1AML C2  C1  SING N N 2  
A1AML C1  C3  SING N N 3  
A1AML N   C3  SING N N 4  
A1AML C4  N   SING N N 5  
A1AML C4  N1  DOUB Y N 6  
A1AML N1  C5  SING Y N 7  
A1AML C5  N2  DOUB Y N 8  
A1AML N2  C6  SING Y N 9  
A1AML C6  N3  SING Y N 10 
A1AML N3  C7  SING Y N 11 
A1AML C7  C8  DOUB Y N 12 
A1AML C8  C9  SING Y N 13 
A1AML C9  C4  SING Y N 14 
A1AML C6  C9  DOUB Y N 15 
A1AML C3  C10 SING N N 16 
A1AML C10 C11 DOUB Y N 17 
A1AML C11 C12 SING Y N 18 
A1AML C12 C13 DOUB Y N 19 
A1AML C13 C14 SING Y N 20 
A1AML C15 C14 DOUB Y N 21 
A1AML C10 C15 SING Y N 22 
A1AML C14 S   SING N N 23 
A1AML O   S   DOUB N N 24 
A1AML S   O1  DOUB N N 25 
A1AML C16 S   SING N N 26 
A1AML C17 C16 SING N N 27 
A1AML O2  C17 SING N N 28 
A1AML C13 O2  SING N N 29 
A1AML N3  H1  SING N N 30 
A1AML C5  H10 SING N N 31 
A1AML C7  H11 SING N N 32 
A1AML C8  H12 SING N N 33 
A1AML C15 H15 SING N N 34 
A1AML C17 H18 SING N N 35 
A1AML C17 H19 SING N N 36 
A1AML C16 H16 SING N N 37 
A1AML C16 H17 SING N N 38 
A1AML C12 H14 SING N N 39 
A1AML C11 H13 SING N N 40 
A1AML C3  H   SING N N 41 
A1AML C1  H5  SING N N 42 
A1AML C2  H7  SING N N 43 
A1AML C2  H6  SING N N 44 
A1AML C2  H8  SING N N 45 
A1AML C   H2  SING N N 46 
A1AML C   H3  SING N N 47 
A1AML C   H4  SING N N 48 
A1AML N   H9  SING N N 49 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
A1AML SMILES           ACDLabs              12.01 "CC(C)C(Nc1ncnc2[NH]ccc21)c1ccc2OCCS(=O)(=O)c2c1"                                                                                                              
A1AML InChI            InChI                1.06  "InChI=1S/C18H20N4O3S/c1-11(2)16(22-18-13-5-6-19-17(13)20-10-21-18)12-3-4-14-15(9-12)26(23,24)8-7-25-14/h3-6,9-11,16H,7-8H2,1-2H3,(H2,19,20,21,22)/t16-/m0/s1" 
A1AML InChIKey         InChI                1.06  CZXKHZZOXXFNSF-INIZCTEOSA-N                                                                                                                                    
A1AML SMILES_CANONICAL CACTVS               3.385 "CC(C)[C@H](Nc1ncnc2[nH]ccc12)c3ccc4OCC[S](=O)(=O)c4c3"                                                                                                        
A1AML SMILES           CACTVS               3.385 "CC(C)[CH](Nc1ncnc2[nH]ccc12)c3ccc4OCC[S](=O)(=O)c4c3"                                                                                                         
A1AML SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)[C@@H](c1ccc2c(c1)S(=O)(=O)CCO2)Nc3c4cc[nH]c4ncn3"                                                                                                       
A1AML SMILES           "OpenEye OEToolkits" 2.0.7 "CC(C)C(c1ccc2c(c1)S(=O)(=O)CCO2)Nc3c4cc[nH]c4ncn3"                                                                                                            
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
A1AML "SYSTEMATIC NAME" ACDLabs              12.01 "6-{(1S)-2-methyl-1-[(7H-pyrrolo[2,3-d]pyrimidin-4-yl)amino]propyl}-2,3-dihydro-4H-1,4lambda~6~-benzoxathiine-4,4-dione"                  
A1AML "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "~{N}-[(1~{S})-1-[4,4-bis(oxidanylidene)-2,3-dihydro-1,4$l^{6}-benzoxathiin-6-yl]-2-methyl-propyl]-7~{H}-pyrrolo[2,3-d]pyrimidin-4-amine" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
A1AML "Create component" 2024-04-11 RCSB 
A1AML "Initial release"  2024-05-15 RCSB 
# 
