data_EBL
# 
_chem_comp.id                                    EBL 
_chem_comp.name                                  "(2~{S})-10-[[5-chloranyl-2-[(3~{S},5~{R})-3-methyl-5-oxidanyl-piperidin-1-yl]pyrimidin-4-yl]amino]-2-cyclopropyl-3,3-bis(fluoranyl)-7-methyl-2,4-dihydro-1~{H}-[1,4]oxazepino[2,3-c]quinolin-6-one" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C26 H29 Cl F2 N6 O3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-01-05 
_chem_comp.pdbx_modified_date                    2022-08-22 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        546.997 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     EBL 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        7QK0 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBE 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
EBL C1  C1  C  0 1 N N N -23.049 13.279 21.388 -5.892 -1.422 0.090  C1  EBL 1  
EBL C2  C2  C  0 1 N N S -23.252 14.202 19.030 -4.846 0.861  -0.195 C2  EBL 2  
EBL C3  C3  C  0 1 N N N -23.793 15.357 18.208 -5.119 2.277  -0.705 C3  EBL 3  
EBL C4  C4  C  0 1 N N N -22.845 16.384 17.683 -6.213 3.083  -0.001 C4  EBL 4  
EBL C5  C5  C  0 1 N N N -23.482 15.418 16.749 -4.740 3.443  0.210  C5  EBL 5  
EBL C6  C6  C  0 1 N N N -23.476 11.767 18.998 -2.978 -0.719 -0.278 C6  EBL 6  
EBL C15 C7  C  0 1 N N N -23.432 7.108  13.223 4.495  -1.041 -1.362 C15 EBL 7  
EBL C16 C8  C  0 1 N N R -24.051 5.738  13.365 5.158  -2.419 -1.433 C16 EBL 8  
EBL C17 C9  C  0 1 N N N -23.995 4.997  12.046 6.669  -2.245 -1.605 C17 EBL 9  
EBL C18 C10 C  0 1 N N S -24.626 5.804  10.918 7.216  -1.416 -0.440 C18 EBL 10 
EBL C24 C11 C  0 1 N N N -22.488 11.509 19.902 -3.586 -1.944 -0.130 C24 EBL 11 
EBL C25 C12 C  0 1 N N N -21.925 10.216 20.146 -2.896 -2.998 0.493  C25 EBL 12 
EBL O2  O1  O  0 1 N N N -20.995 9.998  20.896 -3.446 -4.079 0.620  O2  EBL 13 
EBL O   O2  O  0 1 N N N -22.027 12.478 20.757 -4.859 -2.126 -0.597 O   EBL 14 
EBL N   N1  N  0 1 N N N -23.947 12.967 18.677 -3.666 0.317  -0.884 N   EBL 15 
EBL C   C13 C  0 1 N N N -23.251 14.512 20.539 -6.058 -0.013 -0.464 C   EBL 16 
EBL F1  F1  F  0 1 N N N -24.340 15.195 20.980 -6.263 -0.091 -1.845 F1  EBL 17 
EBL F   F2  F  0 1 N N N -22.247 15.394 20.789 -7.181 0.576  0.126  F   EBL 18 
EBL N1  N2  N  0 1 N N N -22.467 9.188  19.405 -1.642 -2.840 0.952  N1  EBL 19 
EBL C9  C14 C  0 1 N N N -21.924 7.854  19.614 -0.968 -3.972 1.594  C9  EBL 20 
EBL C8  C15 C  0 1 Y N N -23.489 9.374  18.467 -0.973 -1.636 0.835  C8  EBL 21 
EBL C10 C16 C  0 1 Y N N -23.983 8.292  17.750 0.322  -1.490 1.318  C10 EBL 22 
EBL C11 C17 C  0 1 Y N N -24.993 8.466  16.825 0.974  -0.283 1.191  C11 EBL 23 
EBL C12 C18 C  0 1 Y N N -25.524 9.723  16.597 0.347  0.801  0.581  C12 EBL 24 
EBL C23 C19 C  0 1 Y N N -25.041 10.814 17.308 -0.942 0.676  0.093  C23 EBL 25 
EBL C7  C20 C  0 1 Y N N -24.022 10.655 18.246 -1.610 -0.543 0.219  C7  EBL 26 
EBL N2  N3  N  0 1 N N N -26.518 9.866  15.617 1.023  2.020  0.460  N2  EBL 27 
EBL C13 C21 C  0 1 Y N N -26.409 9.558  14.303 2.398  2.036  0.281  C13 EBL 28 
EBL C22 C22 C  0 1 Y N N -27.373 9.973  13.374 3.099  3.245  0.276  C22 EBL 29 
EBL CL  CL1 CL 0 0 N N N -28.769 10.861 13.886 2.268  4.754  0.493  CL  EBL 30 
EBL C21 C23 C  0 1 Y N N -27.179 9.623  12.049 4.469  3.212  0.095  C21 EBL 31 
EBL N5  N4  N  0 1 Y N N -26.122 8.922  11.641 5.073  2.043  -0.067 N5  EBL 32 
EBL C14 C24 C  0 1 Y N N -25.254 8.571  12.594 4.383  0.913  -0.057 C14 EBL 33 
EBL N3  N5  N  0 1 Y N N -25.350 8.854  13.901 3.070  0.900  0.119  N3  EBL 34 
EBL N4  N6  N  0 1 N N N -24.175 7.857  12.212 5.051  -0.287 -0.231 N4  EBL 35 
EBL C20 C25 C  0 1 N N N -24.043 7.208  10.909 6.494  -0.067 -0.397 C20 EBL 36 
EBL C19 C26 C  0 1 N N N -24.423 5.121  9.574  6.980  -2.164 0.874  C19 EBL 37 
EBL O1  O3  O  0 1 N N N -23.387 4.993  14.376 4.895  -3.138 -0.226 O1  EBL 38 
EBL H1  H1  H  0 1 N N N -22.728 13.568 22.399 -6.831 -1.964 -0.024 H1  EBL 39 
EBL H2  H2  H  0 1 N N N -23.987 12.709 21.451 -5.641 -1.362 1.149  H2  EBL 40 
EBL H3  H3  H  0 1 N N N -22.198 14.077 18.740 -4.655 0.893  0.877  H3  EBL 41 
EBL H4  H4  H  0 1 N N N -24.786 15.725 18.504 -5.001 2.421  -1.779 H4  EBL 42 
EBL H5  H5  H  0 1 N N N -21.771 16.306 17.906 -6.813 3.757  -0.611 H5  EBL 43 
EBL H6  H6  H  0 1 N N N -23.139 17.444 17.662 -6.738 2.604  0.826  H6  EBL 44 
EBL H7  H7  H  0 1 N N N -24.247 15.764 16.038 -4.296 3.201  1.176  H7  EBL 45 
EBL H8  H8  H  0 1 N N N -22.879 14.626 16.282 -4.372 4.354  -0.261 H8  EBL 46 
EBL H9  H9  H  0 1 N N N -22.382 7.009  12.912 4.685  -0.499 -2.288 H9  EBL 47 
EBL H10 H10 H  0 1 N N N -23.481 7.638  14.186 3.421  -1.161 -1.224 H10 EBL 48 
EBL H11 H11 H  0 1 N N N -25.108 5.866  13.641 4.755  -2.973 -2.281 H11 EBL 49 
EBL H12 H12 H  0 1 N N N -24.536 4.045  12.149 7.150  -3.223 -1.613 H12 EBL 50 
EBL H13 H13 H  0 1 N N N -22.943 4.796  11.795 6.872  -1.732 -2.545 H13 EBL 51 
EBL H14 H14 H  0 1 N N N -25.707 5.879  11.109 8.284  -1.252 -0.579 H14 EBL 52 
EBL H16 H16 H  0 1 N N N -21.136 7.894  20.380 -1.635 -4.834 1.602  H16 EBL 53 
EBL H17 H17 H  0 1 N N N -22.726 7.180  19.948 -0.063 -4.218 1.039  H17 EBL 54 
EBL H18 H18 H  0 1 N N N -21.499 7.479  18.671 -0.705 -3.706 2.618  H18 EBL 55 
EBL H19 H19 H  0 1 N N N -23.574 7.307  17.917 0.818  -2.324 1.793  H19 EBL 56 
EBL H20 H20 H  0 1 N N N -25.371 7.616  16.276 1.980  -0.176 1.569  H20 EBL 57 
EBL H21 H21 H  0 1 N N N -25.459 11.794 17.133 -1.427 1.516  -0.381 H21 EBL 58 
EBL H22 H22 H  0 1 N N N -27.397 10.233 15.920 0.530  2.855  0.500  H22 EBL 59 
EBL H23 H23 H  0 1 N N N -27.912 9.930  11.318 5.041  4.128  0.086  H23 EBL 60 
EBL H24 H24 H  0 1 N N N -22.976 7.149  10.646 6.871  0.520  0.440  H24 EBL 61 
EBL H25 H25 H  0 1 N N N -24.573 7.809  10.156 6.674  0.471  -1.328 H25 EBL 62 
EBL H26 H26 H  0 1 N N N -24.853 4.109  9.608  7.300  -3.200 0.765  H26 EBL 63 
EBL H27 H27 H  0 1 N N N -24.922 5.705  8.787  7.553  -1.689 1.670  H27 EBL 64 
EBL H28 H28 H  0 1 N N N -23.347 5.055  9.355  5.920  -2.136 1.123  H28 EBL 65 
EBL H29 H29 H  0 1 N N N -23.428 5.467  15.198 3.955  -3.282 -0.051 H29 EBL 66 
EBL H15 H15 H  0 1 N N N -24.036 12.973 17.681 -3.378 0.675  -1.738 H15 EBL 67 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
EBL C19 C18 SING N N 1  
EBL C20 C18 SING N N 2  
EBL C20 N4  SING N N 3  
EBL C18 C17 SING N N 4  
EBL N5  C21 DOUB Y N 5  
EBL N5  C14 SING Y N 6  
EBL C17 C16 SING N N 7  
EBL C21 C22 SING Y N 8  
EBL N4  C14 SING N N 9  
EBL N4  C15 SING N N 10 
EBL C14 N3  DOUB Y N 11 
EBL C15 C16 SING N N 12 
EBL C16 O1  SING N N 13 
EBL C22 CL  SING N N 14 
EBL C22 C13 DOUB Y N 15 
EBL N3  C13 SING Y N 16 
EBL C13 N2  SING N N 17 
EBL N2  C12 SING N N 18 
EBL C12 C11 DOUB Y N 19 
EBL C12 C23 SING Y N 20 
EBL C5  C4  SING N N 21 
EBL C5  C3  SING N N 22 
EBL C11 C10 SING Y N 23 
EBL C23 C7  DOUB Y N 24 
EBL C4  C3  SING N N 25 
EBL C10 C8  DOUB Y N 26 
EBL C3  C2  SING N N 27 
EBL C7  C8  SING Y N 28 
EBL C7  C6  SING N N 29 
EBL C8  N1  SING N N 30 
EBL N   C6  SING N N 31 
EBL N   C2  SING N N 32 
EBL C6  C24 DOUB N N 33 
EBL C2  C   SING N N 34 
EBL N1  C9  SING N N 35 
EBL N1  C25 SING N N 36 
EBL C24 C25 SING N N 37 
EBL C24 O   SING N N 38 
EBL C25 O2  DOUB N N 39 
EBL C   F   SING N N 40 
EBL C   F1  SING N N 41 
EBL C   C1  SING N N 42 
EBL O   C1  SING N N 43 
EBL C1  H1  SING N N 44 
EBL C1  H2  SING N N 45 
EBL C2  H3  SING N N 46 
EBL C3  H4  SING N N 47 
EBL C4  H5  SING N N 48 
EBL C4  H6  SING N N 49 
EBL C5  H7  SING N N 50 
EBL C5  H8  SING N N 51 
EBL C15 H9  SING N N 52 
EBL C15 H10 SING N N 53 
EBL C16 H11 SING N N 54 
EBL C17 H12 SING N N 55 
EBL C17 H13 SING N N 56 
EBL C18 H14 SING N N 57 
EBL C9  H16 SING N N 58 
EBL C9  H17 SING N N 59 
EBL C9  H18 SING N N 60 
EBL C10 H19 SING N N 61 
EBL C11 H20 SING N N 62 
EBL C23 H21 SING N N 63 
EBL N2  H22 SING N N 64 
EBL C21 H23 SING N N 65 
EBL C20 H24 SING N N 66 
EBL C20 H25 SING N N 67 
EBL C19 H26 SING N N 68 
EBL C19 H27 SING N N 69 
EBL C19 H28 SING N N 70 
EBL O1  H29 SING N N 71 
EBL N   H15 SING N N 72 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
EBL InChI            InChI                1.06  "InChI=1S/C26H29ClF2N6O3/c1-13-7-16(36)11-35(10-13)25-30-9-18(27)23(33-25)31-15-5-6-19-17(8-15)20-21(24(37)34(19)2)38-12-26(28,29)22(32-20)14-3-4-14/h5-6,8-9,13-14,16,22,32,36H,3-4,7,10-12H2,1-2H3,(H,30,31,33)/t13-,16+,22-/m0/s1" 
EBL InChIKey         InChI                1.06  GSGDUDAFETZSPM-IATAILRESA-N                                                                                                                                                                                                           
EBL SMILES_CANONICAL CACTVS               3.385 "C[C@H]1C[C@@H](O)CN(C1)c2ncc(Cl)c(Nc3ccc4N(C)C(=O)C5=C(N[C@@H](C6CC6)C(F)(F)CO5)c4c3)n2"                                                                                                                                             
EBL SMILES           CACTVS               3.385 "C[CH]1C[CH](O)CN(C1)c2ncc(Cl)c(Nc3ccc4N(C)C(=O)C5=C(N[CH](C6CC6)C(F)(F)CO5)c4c3)n2"                                                                                                                                                  
EBL SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@H]1C[C@H](CN(C1)c2ncc(c(n2)Nc3ccc4c(c3)C5=C(C(=O)N4C)OCC([C@@H](N5)C6CC6)(F)F)Cl)O"                                                                                                                                              
EBL SMILES           "OpenEye OEToolkits" 2.0.7 "CC1CC(CN(C1)c2ncc(c(n2)Nc3ccc4c(c3)C5=C(C(=O)N4C)OCC(C(N5)C6CC6)(F)F)Cl)O"                                                                                                                                                           
# 
_pdbx_chem_comp_identifier.comp_id           EBL 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "(2~{S})-10-[[5-chloranyl-2-[(3~{S},5~{R})-3-methyl-5-oxidanyl-piperidin-1-yl]pyrimidin-4-yl]amino]-2-cyclopropyl-3,3-bis(fluoranyl)-7-methyl-2,4-dihydro-1~{H}-[1,4]oxazepino[2,3-c]quinolin-6-one" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
EBL "Create component"  2022-01-05 PDBE 
EBL "Initial release"   2022-06-15 RCSB 
EBL "Modify descriptor" 2022-08-22 RCSB 
# 
