data_GFL
#

_chem_comp.id                                   GFL
_chem_comp.name                                 "2-AMINO-9-(2-DEOXY-2-FLUORO-5-O-PHOSPHONO-BETA-D-ARABINOFURANOSYL)-1,9-DIHYDRO-6H-PURIN-6-ONE"
_chem_comp.type                                 "DNA LINKING"
_chem_comp.pdbx_type                            ATOMN
_chem_comp.formula                              "C10 H13 F N5 O7 P"
_chem_comp.mon_nstd_parent_comp_id              DG
_chem_comp.pdbx_synonyms                        "2'-FLUORO-2-DEOXY-GUANOSINE-5'-MONOPHOSPHATE"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2006-09-07
_chem_comp.pdbx_modified_date                   2021-03-01
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       365.212
_chem_comp.one_letter_code                      G
_chem_comp.three_letter_code                    GFL
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       ?
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       ?
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
GFL  O3P     O3P   O  0  1  N  Y  N   -9.951  2.872  9.172   5.663  -1.915  -1.302  O3P     GFL   1  
GFL  P       P     P  0  1  N  N  N   -9.616  2.281  7.702   5.050  -0.836  -0.276  P       GFL   2  
GFL  O1P     O1P   O  0  1  N  N  N  -10.702  1.354  7.312   4.844  -1.472   1.044  O1P     GFL   3  
GFL  O2P     O2P   O  0  1  N  N  N   -8.212  1.812  7.696   6.070   0.400  -0.123  O2P     GFL   4  
GFL  "O5'"   O5*   O  0  1  N  N  N   -9.713  3.591  6.757   3.640  -0.301  -0.840  "O5'"   GFL   5  
GFL  "C5'"   C5*   C  0  1  N  N  N   -9.677  4.918  7.322   3.093   0.558   0.163  "C5'"   GFL   6  
GFL  "C4'"   C4*   C  0  1  N  N  R   -8.273  5.501  7.402   1.745   1.104  -0.312  "C4'"   GFL   7  
GFL  "O4'"   O4*   O  0  1  N  N  N   -7.384  4.654  8.172   0.778   0.036  -0.413  "O4'"   GFL   8  
GFL  "C3'"   C3*   C  0  1  N  N  R   -7.636  5.658  6.007   1.155   2.073   0.736  "C3'"   GFL   9  
GFL  "O3'"   O3*   O  0  1  N  N  N   -7.586  7.060  5.627   1.426   3.428   0.373  "O3'"   GFL  10  
GFL  "C2'"   C2*   C  0  1  N  N  S   -6.251  5.078  6.177  -0.366   1.793   0.693  "C2'"   GFL  11  
GFL  "C1'"   C1*   C  0  1  N  N  R   -6.084  4.933  7.669  -0.512   0.685  -0.374  "C1'"   GFL  12  
GFL  N9      N9    N  0  1  Y  N  N   -5.068  3.918  7.996  -1.551  -0.269   0.020  N9      GFL  13  
GFL  C8      C8    C  0  1  Y  N  N   -5.179  2.605  8.308  -1.360  -1.433   0.706  C8      GFL  14  
GFL  N7      N7    N  0  1  Y  N  N   -4.081  1.957  8.554  -2.502  -2.032   0.884  N7      GFL  15  
GFL  C5      C5    C  0  1  Y  N  N   -3.114  2.963  8.385  -3.489  -1.291   0.326  C5      GFL  16  
GFL  C6      C6    C  0  1  N  N  N   -1.690  2.920  8.508  -4.891  -1.442   0.214  C6      GFL  17  
GFL  O6      O6    O  0  1  N  N  N   -0.967  1.971  8.808  -5.454  -2.415   0.686  O6      GFL  18  
GFL  N1      N1    N  0  1  N  N  N   -1.123  4.159  8.247  -5.592  -0.478  -0.423  N1      GFL  19  
GFL  C2      C2    C  0  1  N  N  N   -1.824  5.296  7.912  -4.952   0.603  -0.951  C2      GFL  20  
GFL  N2      N2    N  0  1  N  N  N   -1.117  6.390  7.692  -5.688   1.563  -1.598  N2      GFL  21  
GFL  N3      N3    N  0  1  N  N  N   -3.139  5.345  7.797  -3.650   0.755  -0.854  N3      GFL  22  
GFL  C4      C4    C  0  1  Y  N  N   -3.721  4.157  8.044  -2.892  -0.155  -0.232  C4      GFL  23  
GFL  F       F     F  0  1  N  N  N   -6.172  3.860  5.559  -0.816   1.339   1.937  F       GFL  24  
GFL  HO3P    HO3P  H  0  0  N  N  N  -10.017  2.157  9.794   6.505  -2.209  -0.928  HO3P    GFL  25  
GFL  HO2P    HO2P  H  0  0  N  N  N   -7.915  1.712  6.799   6.177   0.785  -1.004  HO2P    GFL  26  
GFL  "H5'1"  1H5*  H  0  0  N  N  N  -10.288  5.578  6.688   3.777   1.387   0.344  "H5'1"  GFL  27  
GFL  "H5'2"  2H5*  H  0  0  N  N  N  -10.061  4.847  8.350   2.952  -0.005   1.086  "H5'2"  GFL  28  
GFL  "H4'"   H4*   H  0  1  N  N  N   -8.391  6.482  7.885   1.857   1.606  -1.273  "H4'"   GFL  29  
GFL  "H3'"   H3*   H  0  1  N  N  N   -8.203  5.153  5.211   1.556   1.856   1.726  "H3'"   GFL  30  
GFL  "HO3'"  HO3*  H  0  0  N  N  N   -7.575  7.600  6.408   1.035   3.985   1.061  "HO3'"  GFL  31  
GFL  "H2'"   H2*   H  0  1  N  N  N   -5.468  5.709  5.732  -0.911   2.689   0.395  "H2'"   GFL  32  
GFL  "H1'"   H1*   H  0  1  N  N  N   -5.696  5.845  8.147  -0.746   1.122  -1.344  "H1'"   GFL  33  
GFL  H8      H8    H  0  1  N  N  N   -6.141  2.117  8.350  -0.405  -1.802   1.049  H8      GFL  34  
GFL  HN1     HN1   H  0  1  N  N  N   -0.127  4.232  8.307  -6.554  -0.560  -0.512  HN1     GFL  35  
GFL  HN21    1HN2  H  0  0  N  N  N   -1.714  7.156  7.453  -5.247   2.340  -1.976  HN21    GFL  36  
GFL  HN22    2HN2  H  0  0  N  N  N   -0.121  6.445  7.756  -6.650   1.463  -1.681  HN22    GFL  37  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
GFL  O3P    P       SING  N  N   1  
GFL  O3P    HO3P    SING  N  N   2  
GFL  P      O1P     DOUB  N  N   3  
GFL  P      O2P     SING  N  N   4  
GFL  P      "O5'"   SING  N  N   5  
GFL  O2P    HO2P    SING  N  N   6  
GFL  "O5'"  "C5'"   SING  N  N   7  
GFL  "C5'"  "C4'"   SING  N  N   8  
GFL  "C5'"  "H5'1"  SING  N  N   9  
GFL  "C5'"  "H5'2"  SING  N  N  10  
GFL  "C4'"  "O4'"   SING  N  N  11  
GFL  "C4'"  "C3'"   SING  N  N  12  
GFL  "C4'"  "H4'"   SING  N  N  13  
GFL  "O4'"  "C1'"   SING  N  N  14  
GFL  "C3'"  "O3'"   SING  N  N  15  
GFL  "C3'"  "C2'"   SING  N  N  16  
GFL  "C3'"  "H3'"   SING  N  N  17  
GFL  "O3'"  "HO3'"  SING  N  N  18  
GFL  "C2'"  "C1'"   SING  N  N  19  
GFL  "C2'"  F       SING  N  N  20  
GFL  "C2'"  "H2'"   SING  N  N  21  
GFL  "C1'"  N9      SING  N  N  22  
GFL  "C1'"  "H1'"   SING  N  N  23  
GFL  N9     C8      SING  Y  N  24  
GFL  N9     C4      SING  Y  N  25  
GFL  C8     N7      DOUB  Y  N  26  
GFL  C8     H8      SING  N  N  27  
GFL  N7     C5      SING  Y  N  28  
GFL  C5     C6      SING  N  N  29  
GFL  C5     C4      DOUB  Y  N  30  
GFL  C6     O6      DOUB  N  N  31  
GFL  C6     N1      SING  N  N  32  
GFL  N1     C2      SING  N  N  33  
GFL  N1     HN1     SING  N  N  34  
GFL  C2     N2      SING  N  N  35  
GFL  C2     N3      DOUB  N  N  36  
GFL  N2     HN21    SING  N  N  37  
GFL  N2     HN22    SING  N  N  38  
GFL  N3     C4      SING  N  N  39  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
GFL  SMILES            ACDLabs               10.04  "O=C1c2ncn(c2N=C(N)N1)C3OC(C(O)C3F)COP(=O)(O)O"  
GFL  SMILES_CANONICAL  CACTVS                3.341  "NC1=Nc2n(cnc2C(=O)N1)[C@@H]3O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@@H]3F"  
GFL  SMILES            CACTVS                3.341  "NC1=Nc2n(cnc2C(=O)N1)[CH]3O[CH](CO[P](O)(O)=O)[CH](O)[CH]3F"  
GFL  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "c1nc2c(n1[C@H]3[C@H]([C@@H]([C@H](O3)COP(=O)(O)O)O)F)N=C(NC2=O)N"  
GFL  SMILES            "OpenEye OEToolkits"  1.5.0  "c1nc2c(n1C3C(C(C(O3)COP(=O)(O)O)O)F)N=C(NC2=O)N"  
GFL  InChI             InChI                 1.03   "InChI=1S/C10H13FN5O7P/c11-4-6(17)3(1-22-24(19,20)21)23-9(4)16-2-13-5-7(16)14-10(12)15-8(5)18/h2-4,6,9,17H,1H2,(H2,19,20,21)(H3,12,14,15,18)/t3-,4+,6-,9-/m1/s1"  
GFL  InChIKey          InChI                 1.03   ZTDPJNQLNRZPCT-AYQXTPAHSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
GFL  "SYSTEMATIC NAME"  ACDLabs               10.04  "2-amino-9-(2-deoxy-2-fluoro-5-O-phosphono-beta-D-arabinofuranosyl)-1,9-dihydro-6H-purin-6-one"  
GFL  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.5.0  "[(2R,3R,4S,5R)-5-(2-amino-6-oxo-1H-purin-9-yl)-4-fluoro-3-hydroxy-oxolan-2-yl]methyl dihydrogen phosphate"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
GFL  "Create component"   2006-09-07  RCSB  
GFL  "Modify descriptor"  2011-06-04  RCSB  
GFL  "Modify synonyms"    2021-03-01  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     GFL
_pdbx_chem_comp_synonyms.name        "2'-FLUORO-2-DEOXY-GUANOSINE-5'-MONOPHOSPHATE"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
