data_S8L
# 
_chem_comp.id                                    S8L 
_chem_comp.name                                  "1-{5-O-[(S)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]oxy}phosphoryl]-beta-D-ribofuranosyl}-1H-pyrrole-2-carbaldehyde" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C10 H16 N O14 P3" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2022-06-27 
_chem_comp.pdbx_modified_date                    2023-01-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        467.154 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     S8L 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8DH1 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
S8L C14 C1  C 0 1 N N N 17.201 33.550 -28.348 -1.271 -2.101 -0.285 C14 S8L 1  
S8L C15 C2  C 0 1 N N R 18.590 33.631 -29.060 -2.465 -1.497 0.455  C15 S8L 2  
S8L C16 C3  C 0 1 N N S 19.437 34.807 -28.480 -3.768 -2.225 0.060  C16 S8L 3  
S8L C17 C4  C 0 1 N N R 20.487 35.042 -29.600 -4.828 -1.102 0.015  C17 S8L 4  
S8L C19 C5  C 0 1 N N R 19.976 34.551 -30.681 -4.040 0.173  0.390  C19 S8L 5  
S8L C21 C6  C 0 1 Y N N 19.787 35.277 -33.045 -5.598 2.115  -0.060 C21 S8L 6  
S8L C22 C7  C 0 1 N N N 19.821 33.905 -33.717 -6.428 1.976  1.077  C22 S8L 7  
S8L C24 C8  C 0 1 Y N N 19.680 36.499 -33.694 -5.714 3.080  -1.045 C24 S8L 8  
S8L C25 C9  C 0 1 Y N N 19.686 37.500 -32.739 -4.693 2.842  -1.968 C25 S8L 9  
S8L C26 C10 C 0 1 Y N N 19.795 36.911 -31.522 -3.989 1.764  -1.543 C26 S8L 10 
S8L N20 N1  N 0 1 Y N N 19.862 35.525 -31.709 -4.522 1.317  -0.387 N20 S8L 11 
S8L O02 O1  O 0 1 N N N 18.507 30.410 -28.933 1.408  -1.740 -1.855 O02 S8L 12 
S8L O03 O2  O 0 1 N N N 16.632 29.908 -27.401 1.720  -3.416 0.006  O03 S8L 13 
S8L O04 O3  O 0 1 N N N 18.453 31.553 -26.576 2.500  -0.919 0.267  O04 S8L 14 
S8L O06 O4  O 0 1 N N N 19.123 31.604 -24.067 4.055  -0.207 -1.589 O06 S8L 15 
S8L O07 O5  O 0 1 N N N 18.064 29.710 -24.819 5.002  -1.724 0.192  O07 S8L 16 
S8L O08 O6  O 0 1 N N N 16.567 31.813 -24.618 4.446  0.797  0.693  O08 S8L 17 
S8L O10 O7  O 0 1 N N N 14.940 33.690 -23.928 6.826  1.280  0.008  O10 S8L 18 
S8L O11 O8  O 0 1 N N N 16.723 33.393 -22.596 5.082  3.005  -0.583 O11 S8L 19 
S8L O12 O9  O 0 1 N N N 17.203 34.432 -24.901 5.869  2.649  1.900  O12 S8L 20 
S8L O13 O10 O 0 1 N N N 16.701 32.220 -28.496 -0.064 -1.493 0.180  O13 S8L 21 
S8L O18 O11 O 0 1 N N N 21.778 34.295 -29.264 -5.861 -1.351 0.971  O18 S8L 22 
S8L O23 O12 O 0 1 N N N 18.859 33.468 -34.323 -7.346 2.750  1.256  O23 S8L 23 
S8L O27 O13 O 0 1 N N N 18.478 33.939 -30.287 -2.670 -0.127 0.046  O27 S8L 24 
S8L O28 O14 O 0 1 N N N 19.993 34.424 -27.351 -4.115 -3.202 1.043  O28 S8L 25 
S8L P01 P1  P 0 1 N N N 17.565 30.985 -27.881 1.391  -1.889 -0.383 P01 S8L 26 
S8L P05 P2  P 0 1 N N N 18.061 31.165 -25.005 4.002  -0.507 -0.141 P05 S8L 27 
S8L P09 P3  P 0 1 N N N 16.347 33.336 -23.991 5.583  1.919  0.494  P09 S8L 28 
S8L H1  H1  H 0 1 N N N 17.315 33.788 -27.280 -1.232 -3.174 -0.098 H1  S8L 29 
S8L H2  H2  H 0 1 N N N 16.503 34.264 -28.810 -1.378 -1.922 -1.355 H2  S8L 30 
S8L H3  H3  H 0 1 N N N 19.130 32.687 -28.893 -2.311 -1.553 1.533  H3  S8L 31 
S8L H4  H4  H 0 1 N N N 18.803 35.700 -28.374 -3.663 -2.690 -0.921 H4  S8L 32 
S8L H5  H5  H 0 1 N N N 20.698 36.119 -29.674 -5.247 -1.011 -0.987 H5  S8L 33 
S8L H6  H6  H 0 1 N N N 20.569 33.702 -31.051 -4.130 0.375  1.457  H6  S8L 34 
S8L H8  H8  H 0 1 N N N 20.719 33.309 -33.653 -6.245 1.181  1.785  H8  S8L 35 
S8L H9  H9  H 0 1 N N N 19.605 36.644 -34.762 -6.452 3.866  -1.092 H9  S8L 36 
S8L H10 H10 H 0 1 N N N 19.616 38.561 -32.929 -4.499 3.416  -2.862 H10 S8L 37 
S8L H11 H11 H 0 1 N N N 19.825 37.423 -30.572 -3.135 1.334  -2.046 H11 S8L 38 
S8L H12 H12 H 0 1 N N N 16.826 29.096 -27.854 1.726  -3.587 0.958  H12 S8L 39 
S8L H13 H13 H 0 1 N N N 18.721 29.474 -24.175 5.019  -1.975 1.126  H13 S8L 40 
S8L H14 H14 H 0 1 N N N 15.968 33.636 -22.074 4.269  3.464  -0.329 H14 S8L 41 
S8L H15 H15 H 0 1 N N N 16.615 35.105 -25.223 6.545  3.339  1.855  H15 S8L 42 
S8L H16 H16 H 0 1 N N N 22.417 34.441 -29.951 -6.349 -2.171 0.818  H16 S8L 43 
S8L H18 H18 H 0 1 N N N 20.510 35.137 -26.994 -4.925 -3.690 0.845  H18 S8L 44 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
S8L C14 C15 SING N N 1  
S8L C14 O13 SING N N 2  
S8L C15 C16 SING N N 3  
S8L C15 O27 SING N N 4  
S8L C16 C17 SING N N 5  
S8L C16 O28 SING N N 6  
S8L C17 C19 SING N N 7  
S8L C17 O18 SING N N 8  
S8L C19 N20 SING N N 9  
S8L C21 C22 SING N N 10 
S8L C21 C24 DOUB Y N 11 
S8L C21 N20 SING Y N 12 
S8L C22 O23 DOUB N N 13 
S8L C24 C25 SING Y N 14 
S8L C25 C26 DOUB Y N 15 
S8L C26 N20 SING Y N 16 
S8L O02 P01 DOUB N N 17 
S8L O03 P01 SING N N 18 
S8L O04 P01 SING N N 19 
S8L O04 P05 SING N N 20 
S8L O06 P05 DOUB N N 21 
S8L O07 P05 SING N N 22 
S8L O08 P05 SING N N 23 
S8L O08 P09 SING N N 24 
S8L O10 P09 DOUB N N 25 
S8L O11 P09 SING N N 26 
S8L O12 P09 SING N N 27 
S8L O13 P01 SING N N 28 
S8L C14 H1  SING N N 29 
S8L C14 H2  SING N N 30 
S8L C15 H3  SING N N 31 
S8L C16 H4  SING N N 32 
S8L C17 H5  SING N N 33 
S8L C19 H6  SING N N 34 
S8L C22 H8  SING N N 35 
S8L C24 H9  SING N N 36 
S8L C25 H10 SING N N 37 
S8L C26 H11 SING N N 38 
S8L O03 H12 SING N N 39 
S8L O07 H13 SING N N 40 
S8L O11 H14 SING N N 41 
S8L O12 H15 SING N N 42 
S8L O18 H16 SING N N 43 
S8L O28 H18 SING N N 44 
S8L C19 O27 SING N N 45 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
S8L SMILES           ACDLabs              12.01 "O=P(O)(O)OP(=O)(O)OP(=O)(O)OCC1OC(n2cccc2C=O)C(O)C1O"                                                                                                                            
S8L InChI            InChI                1.06  "InChI=1S/C10H16NO14P3/c12-4-6-2-1-3-11(6)10-9(14)8(13)7(23-10)5-22-27(18,19)25-28(20,21)24-26(15,16)17/h1-4,7-10,13-14H,5H2,(H,18,19)(H,20,21)(H2,15,16,17)/t7-,8-,9-,10?/m1/s1" 
S8L InChIKey         InChI                1.06  CLXMUGOYLDUWBK-PBVVMKELSA-N                                                                                                                                                       
S8L SMILES_CANONICAL CACTVS               3.385 "O[C@H]1[C@@H](O)[C@@H](O[C@@H]1CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)n2cccc2C=O"                                                                                                   
S8L SMILES           CACTVS               3.385 "O[CH]1[CH](O)[CH](O[CH]1CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)n2cccc2C=O"                                                                                                          
S8L SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(n(c1)C2[C@@H]([C@@H]([C@H](O2)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)O)O)C=O"                                                                                                        
S8L SMILES           "OpenEye OEToolkits" 2.0.7 "c1cc(n(c1)C2C(C(C(O2)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)O)O)C=O"                                                                                                                      
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
S8L "SYSTEMATIC NAME" ACDLabs              12.01 "1-{5-O-[(S)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]oxy}phosphoryl]-beta-D-ribofuranosyl}-1H-pyrrole-2-carbaldehyde"                
S8L "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "[[(2~{R},3~{S},4~{R})-5-(2-methanoylpyrrol-1-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
S8L "Create component" 2022-06-27 RCSB 
S8L "Initial release"  2023-02-01 RCSB 
# 
