data_W0L
# 
_chem_comp.id                                    W0L 
_chem_comp.name                                  "(1R,2S,5S)-3-[bis(4-chlorophenyl)acetyl]-N-{(2S)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-6,6-dimethyl-3-azabicyclo[3.1.0]hexane-2-carboxamide" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C29 H33 Cl2 N3 O4" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-09-21 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        558.496 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     W0L 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8U9N 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
W0L C1   C1  C  0 1 Y N N N N N -8.874  -17.844 -19.378 2.646  -1.759 -0.712 C1   W0L 1  
W0L C10  C2  C  0 1 Y N N N N N -12.571 -19.706 -18.383 4.075  1.828  1.118  C10  W0L 2  
W0L C11  C3  C  0 1 Y N N N N N -13.679 -19.370 -19.158 4.475  2.783  0.200  C11  W0L 3  
W0L C12  C4  C  0 1 N N N N N N -9.990  -16.004 -18.425 0.654  -0.373 -0.306 C12  W0L 4  
W0L C13  C5  C  0 1 N N N N N N -8.361  -14.775 -19.899 0.132  1.925  -1.258 C13  W0L 5  
W0L C14  C6  C  0 1 N N S N N N -9.240  -13.785 -17.847 -1.444 0.975  0.186  C14  W0L 6  
W0L C15  C7  C  0 1 N N N N N N -10.632 -13.209 -17.953 -2.559 0.709  -0.792 C15  W0L 7  
W0L C16  C8  C  0 1 N N S N N N -7.762  -13.388 -19.759 -0.368 3.098  -0.387 C16  W0L 8  
W0L C17  C9  C  0 1 N N S N N N -12.620 -12.341 -16.857 -4.906 0.290  -1.298 C17  W0L 9  
W0L C18  C10 C  0 1 N N N N N N -6.752  -13.295 -18.625 -0.100 3.043  1.118  C18  W0L 10 
W0L C19  C11 C  0 1 N N N N N N -13.516 -13.192 -15.949 -6.043 -0.445 -0.587 C19  W0L 11 
W0L C2   C12 C  0 1 Y N N N N N -8.279  -17.810 -18.128 2.783  -2.162 0.603  C2   W0L 12 
W0L C20  C13 C  0 1 N N S N N N -13.543 -14.648 -16.402 -5.558 -1.826 -0.140 C20  W0L 13 
W0L C21  C14 C  0 1 N N N N N N -14.404 -14.885 -17.639 -6.700 -2.602 0.556  C21  W0L 14 
W0L C22  C15 C  0 1 N N N N N N -15.091 -16.226 -17.375 -6.452 -2.262 2.042  C22  W0L 15 
W0L C23  C16 C  0 1 N N N N N N -5.751  -12.134 -18.662 -0.178 4.357  1.897  C23  W0L 16 
W0L C24  C17 C  0 1 N N N N N N -14.196 -15.527 -15.372 -4.495 -1.693 0.928  C24  W0L 17 
W0L C25  C18 C  0 1 N N N N N N -6.332  -14.503 -17.784 0.952  2.047  1.611  C25  W0L 18 
W0L C26  C19 C  0 1 Y N N N N N -13.618 -18.288 -20.030 4.064  2.690  -1.117 C26  W0L 19 
W0L C27  C20 C  0 1 Y N N N N N -12.451 -17.543 -20.127 3.254  1.644  -1.516 C27  W0L 20 
W0L C3   C21 C  0 1 Y N N N N N -7.114  -18.477 -17.870 3.401  -3.362 0.898  C3   W0L 21 
W0L C31  C22 C  0 1 N N N N N N -10.112 -17.053 -19.501 1.971  -0.451 -1.034 C31  W0L 22 
W0L C34  C23 C  0 1 N N R N N N -8.201  -12.805 -18.415 -1.407 2.471  0.566  C34  W0L 23 
W0L C4   C24 C  0 1 Y N N N N N -6.542  -19.175 -18.906 3.884  -4.161 -0.123 C4   W0L 24 
W0L C5   C25 C  0 1 Y N N N N N -7.110  -19.216 -20.182 3.747  -3.758 -1.439 C5   W0L 25 
W0L C6   C26 C  0 1 Y N N N N N -8.298  -18.535 -20.438 3.133  -2.555 -1.733 C6   W0L 26 
W0L C7   C27 C  0 1 Y N N N N N -11.339 -17.877 -19.356 2.855  0.690  -0.599 C7   W0L 27 
W0L C8   C28 C  0 1 N N N N N N -12.651 -10.882 -16.400 -5.425 1.618  -1.854 C8   W0L 28 
W0L C9   C29 C  0 1 Y N N N N N -11.398 -18.962 -18.485 3.270  0.779  0.717  C9   W0L 29 
W0L N13  N1  N  0 1 N N N N N N -9.233  -14.943 -18.731 -0.128 0.716  -0.443 N13  W0L 30 
W0L N16  N2  N  0 1 N N N N N N -11.255 -12.851 -16.843 -3.822 0.549  -0.347 N16  W0L 31 
W0L N23  N3  N  0 1 N N N N N N -14.992 -16.414 -15.934 -5.022 -1.948 2.138  N23  W0L 32 
W0L O26  O1  O  0 1 N N N N N N -13.986 -15.459 -14.172 -3.336 -1.400 0.723  O26  W0L 33 
W0L O33  O2  O  0 1 N N N N N N -10.516 -16.154 -17.323 0.299  -1.289 0.404  O33  W0L 34 
W0L O38  O3  O  0 1 N N N N N N -11.163 -13.098 -19.060 -2.321 0.637  -1.979 O38  W0L 35 
W0L O9   O4  O  0 1 N N N N N N -13.925 -10.254 -16.632 -6.021 2.375  -0.799 O9   W0L 36 
W0L CL28 CL1 CL 0 0 N N N N N N -5.023  -20.032 -18.522 4.662  -5.668 0.247  CL28 W0L 37 
W0L CL29 CL2 CL 0 0 N N N N N N -15.196 -20.327 -19.032 5.492  4.098  0.702  CL29 W0L 38 
W0L H1   H1  H  0 1 N N N N N N -12.622 -20.544 -17.703 4.396  1.900  2.147  H1   W0L 39 
W0L H2   H2  H  0 1 N N N N N N -8.944  -14.850 -20.829 -0.427 1.881  -2.193 H2   W0L 40 
W0L H3   H3  H  0 1 N N N N N N -7.569  -15.538 -19.901 1.199  2.027  -1.457 H3   W0L 41 
W0L H4   H4  H  0 1 N N N N N N -8.998  -14.055 -16.809 -1.566 0.360  1.078  H4   W0L 42 
W0L H5   H5  H  0 1 N N N N N N -7.668  -12.733 -20.638 -0.510 4.063  -0.873 H5   W0L 43 
W0L H6   H6  H  0 1 N N N N N N -13.017 -12.392 -17.881 -4.532 -0.325 -2.117 H6   W0L 44 
W0L H7   H7  H  0 1 N N N N N N -13.131 -13.144 -14.920 -6.358 0.129  0.285  H7   W0L 45 
W0L H8   H8  H  0 1 N N N N N N -14.539 -12.789 -15.977 -6.885 -0.559 -1.269 H8   W0L 46 
W0L H9   H9  H  0 1 N N N N N N -8.747  -17.242 -17.337 2.406  -1.538 1.400  H9   W0L 47 
W0L H10  H10 H  0 1 N N N N N N -12.517 -14.994 -16.594 -5.175 -2.388 -0.992 H10  W0L 48 
W0L H11  H11 H  0 1 N N N N N N -13.780 -14.939 -18.543 -7.674 -2.237 0.230  H11  W0L 49 
W0L H12  H12 H  0 1 N N N N N N -15.148 -14.083 -17.755 -6.607 -3.674 0.380  H12  W0L 50 
W0L H13  H13 H  0 1 N N N N N N -16.144 -16.191 -17.690 -7.048 -1.399 2.336  H13  W0L 51 
W0L H14  H14 H  0 1 N N N N N N -14.575 -17.038 -17.909 -6.693 -3.120 2.670  H14  W0L 52 
W0L H15  H15 H  0 1 N N N N N N -5.088  -12.193 -17.787 -0.574 5.140  1.250  H15  W0L 53 
W0L H16  H16 H  0 1 N N N N N N -5.151  -12.197 -19.582 -0.835 4.231  2.758  H16  W0L 54 
W0L H17  H17 H  0 1 N N N N N N -6.297  -11.179 -18.645 0.818  4.638  2.238  H17  W0L 55 
W0L H18  H18 H  0 1 N N N N N N -5.595  -14.188 -17.030 1.820  2.591  1.985  H18  W0L 56 
W0L H19  H19 H  0 1 N N N N N N -7.215  -14.924 -17.280 0.531  1.440  2.413  H19  W0L 57 
W0L H20  H20 H  0 1 N N N N N N -5.884  -15.266 -18.437 1.256  1.401  0.787  H20  W0L 58 
W0L H21  H21 H  0 1 N N N N N N -14.477 -18.028 -20.631 4.375  3.436  -1.834 H21  W0L 59 
W0L H22  H22 H  0 1 N N N N N N -12.404 -16.701 -20.802 2.932  1.571  -2.545 H22  W0L 60 
W0L H23  H23 H  0 1 N N N N N N -6.661  -18.456 -16.890 3.508  -3.676 1.926  H23  W0L 61 
W0L H24  H24 H  0 1 N N N N N N -10.127 -16.555 -20.481 1.797  -0.386 -2.108 H24  W0L 62 
W0L H25  H25 H  0 1 N N N N N N -8.389  -11.724 -18.336 -2.350 2.968  0.794  H25  W0L 63 
W0L H26  H26 H  0 1 N N N N N N -6.628  -19.776 -20.970 4.123  -4.381 -2.237 H26  W0L 64 
W0L H27  H27 H  0 1 N N N N N N -8.752  -18.543 -21.418 3.026  -2.240 -2.761 H27  W0L 65 
W0L H28  H28 H  0 1 N N N N N N -12.432 -10.846 -15.323 -4.596 2.181  -2.282 H28  W0L 66 
W0L H29  H29 H  0 1 N N N N N N -11.879 -10.325 -16.950 -6.169 1.422  -2.626 H29  W0L 67 
W0L H30  H30 H  0 1 N N N N N N -10.536 -19.226 -17.890 2.958  0.033  1.433  H30  W0L 68 
W0L H31  H31 H  0 1 N N N N N N -10.776 -12.933 -15.969 -4.012 0.606  0.602  H31  W0L 69 
W0L H32  H32 H  0 1 N N N N N N -15.472 -17.132 -15.430 -4.520 -1.927 2.969  H32  W0L 70 
W0L H33  H33 H  0 1 N N N N N N -13.894 -9.353  -16.333 -6.372 3.231  -1.079 H33  W0L 71 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
W0L C6  C5   DOUB Y N 1  
W0L C6  C1   SING Y N 2  
W0L C5  C4   SING Y N 3  
W0L C27 C26  DOUB Y N 4  
W0L C27 C7   SING Y N 5  
W0L C26 C11  SING Y N 6  
W0L C13 C16  SING N N 7  
W0L C13 N13  SING N N 8  
W0L C16 C18  SING N N 9  
W0L C16 C34  SING N N 10 
W0L C31 C1   SING N N 11 
W0L C31 C7   SING N N 12 
W0L C31 C12  SING N N 13 
W0L C1  C2   DOUB Y N 14 
W0L C7  C9   DOUB Y N 15 
W0L C11 CL29 SING N N 16 
W0L C11 C10  DOUB Y N 17 
W0L O38 C15  DOUB N N 18 
W0L C4  CL28 SING N N 19 
W0L C4  C3   DOUB Y N 20 
W0L N13 C12  SING N N 21 
W0L N13 C14  SING N N 22 
W0L C23 C18  SING N N 23 
W0L C18 C34  SING N N 24 
W0L C18 C25  SING N N 25 
W0L C9  C10  SING Y N 26 
W0L C12 O33  DOUB N N 27 
W0L C34 C14  SING N N 28 
W0L C2  C3   SING Y N 29 
W0L C15 C14  SING N N 30 
W0L C15 N16  SING N N 31 
W0L C21 C22  SING N N 32 
W0L C21 C20  SING N N 33 
W0L C22 N23  SING N N 34 
W0L C17 N16  SING N N 35 
W0L C17 C8   SING N N 36 
W0L C17 C19  SING N N 37 
W0L O9  C8   SING N N 38 
W0L C20 C19  SING N N 39 
W0L C20 C24  SING N N 40 
W0L N23 C24  SING N N 41 
W0L C24 O26  DOUB N N 42 
W0L C10 H1   SING N N 43 
W0L C13 H2   SING N N 44 
W0L C13 H3   SING N N 45 
W0L C14 H4   SING N N 46 
W0L C16 H5   SING N N 47 
W0L C17 H6   SING N N 48 
W0L C19 H7   SING N N 49 
W0L C19 H8   SING N N 50 
W0L C2  H9   SING N N 51 
W0L C20 H10  SING N N 52 
W0L C21 H11  SING N N 53 
W0L C21 H12  SING N N 54 
W0L C22 H13  SING N N 55 
W0L C22 H14  SING N N 56 
W0L C23 H15  SING N N 57 
W0L C23 H16  SING N N 58 
W0L C23 H17  SING N N 59 
W0L C25 H18  SING N N 60 
W0L C25 H19  SING N N 61 
W0L C25 H20  SING N N 62 
W0L C26 H21  SING N N 63 
W0L C27 H22  SING N N 64 
W0L C3  H23  SING N N 65 
W0L C31 H24  SING N N 66 
W0L C34 H25  SING N N 67 
W0L C5  H26  SING N N 68 
W0L C6  H27  SING N N 69 
W0L C8  H28  SING N N 70 
W0L C8  H29  SING N N 71 
W0L C9  H30  SING N N 72 
W0L N16 H31  SING N N 73 
W0L N23 H32  SING N N 74 
W0L O9  H33  SING N N 75 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
W0L SMILES           ACDLabs              12.01 "CC1(C)C2C(C(=O)NC(CC3CCNC3=O)CO)N(CC21)C(=O)C(c1ccc(Cl)cc1)c1ccc(Cl)cc1"                                                                                                                                                        
W0L InChI            InChI                1.06  "InChI=1S/C29H33Cl2N3O4/c1-29(2)22-14-34(25(24(22)29)27(37)33-21(15-35)13-18-11-12-32-26(18)36)28(38)23(16-3-7-19(30)8-4-16)17-5-9-20(31)10-6-17/h3-10,18,21-25,35H,11-15H2,1-2H3,(H,32,36)(H,33,37)/t18-,21-,22-,24-,25-/m0/s1" 
W0L InChIKey         InChI                1.06  LQZGOZHGFUYGDK-WSHBUQBJSA-N                                                                                                                                                                                                      
W0L SMILES_CANONICAL CACTVS               3.385 "CC1(C)[C@H]2CN([C@@H]([C@@H]12)C(=O)N[C@H](CO)C[C@@H]3CCNC3=O)C(=O)C(c4ccc(Cl)cc4)c5ccc(Cl)cc5"                                                                                                                                 
W0L SMILES           CACTVS               3.385 "CC1(C)[CH]2CN([CH]([CH]12)C(=O)N[CH](CO)C[CH]3CCNC3=O)C(=O)C(c4ccc(Cl)cc4)c5ccc(Cl)cc5"                                                                                                                                         
W0L SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC1([C@@H]2[C@H]1[C@H](N(C2)C(=O)C(c3ccc(cc3)Cl)c4ccc(cc4)Cl)C(=O)N[C@@H](C[C@@H]5CCNC5=O)CO)C"                                                                                                                                 
W0L SMILES           "OpenEye OEToolkits" 2.0.7 "CC1(C2C1C(N(C2)C(=O)C(c3ccc(cc3)Cl)c4ccc(cc4)Cl)C(=O)NC(CC5CCNC5=O)CO)C"                                                                                                                                                        
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
W0L "SYSTEMATIC NAME" ACDLabs              12.01 "(1R,2S,5S)-3-[bis(4-chlorophenyl)acetyl]-N-{(2S)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-6,6-dimethyl-3-azabicyclo[3.1.0]hexane-2-carboxamide"                                    
W0L "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(1~{R},2~{S},5~{S})-3-[2,2-bis(4-chlorophenyl)ethanoyl]-6,6-dimethyl-~{N}-[(2~{S})-1-oxidanyl-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]-3-azabicyclo[3.1.0]hexane-2-carboxamide" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
W0L "Create component" 2023-09-21 RCSB 
W0L "Initial release"  2024-09-25 RCSB 
W0L "Modify PCM"       2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            W0L 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C8 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
