data_X3L
# 
_chem_comp.id                                    X3L 
_chem_comp.name                                  "(3~{R})-6-[[4-(3,5-dimethyl-1~{H}-pyrazol-4-yl)pyrimidin-2-yl]amino]-1,3-dimethyl-4-propan-2-yl-3~{H}-quinoxalin-2-one" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C22 H27 N7 O" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-10-20 
_chem_comp.pdbx_modified_date                    2024-07-19 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        405.496 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     X3L 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8WQO 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBJ 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
X3L C10  C1  C 0 1 Y N N N N N 6.627  -11.003 -0.830 -2.615 2.089  -0.951 C10  X3L 1  
X3L C13  C2  C 0 1 Y N N N N N 9.095  -10.098 -3.576 -5.486 -0.163 -0.062 C13  X3L 2  
X3L C15  C3  C 0 1 N N N N N N 9.154  -7.510  -3.898 -5.095 -2.505 -1.027 C15  X3L 3  
X3L C21  C4  C 0 1 Y N N N N N 10.674 -7.742  -0.069 1.614  -0.983 -0.059 C21  X3L 4  
X3L C22  C5  C 0 1 Y N N N N N 11.815 -6.898  0.027  2.899  -0.468 -0.127 C22  X3L 5  
X3L C24  C6  C 0 1 N N N N N N 12.769 -7.955  -2.005 4.569  -1.861 0.794  C24  X3L 6  
X3L C26  C7  C 0 1 N N N N N N 13.548 -7.413  -3.209 4.952  -0.720 1.738  C26  X3L 7  
X3L C28  C8  C 0 1 N N N N N N 14.556 -7.822  0.824  6.231  -1.511 -1.349 C28  X3L 8  
X3L C01  C9  C 0 1 N N N N N N 12.879 -3.782  1.727  4.746  2.698  0.646  C01  X3L 9  
X3L C03  C10 C 0 1 Y N N N N N 11.892 -5.977  1.028  3.113  0.890  0.112  C03  X3L 10 
X3L C04  C11 C 0 1 Y N N N N N 10.839 -5.816  1.961  2.047  1.719  0.420  C04  X3L 11 
X3L C05  C12 C 0 1 Y N N N N N 9.725  -6.644  1.861  0.767  1.202  0.488  C05  X3L 12 
X3L C06  C13 C 0 1 Y N N N N N 9.642  -7.593  0.857  0.548  -0.148 0.249  C06  X3L 13 
X3L C08  C14 C 0 1 Y N N N N N 8.014  -9.294  -0.201 -1.830 0.114  -0.058 C08  X3L 14 
X3L C11  C15 C 0 1 Y N N N N N 7.285  -11.023 -2.047 -3.913 1.637  -0.796 C11  X3L 15 
X3L C12  C16 C 0 1 Y N N N N N 8.318  -10.133 -2.278 -4.115 0.367  -0.249 C12  X3L 16 
X3L C14  C17 C 0 1 Y N N N N N 9.460  -8.965  -4.270 -5.922 -1.413 -0.399 C14  X3L 17 
X3L C18  C18 C 0 1 Y N N N N N 9.584  -11.204 -4.271 -6.577 0.529  0.501  C18  X3L 18 
X3L C19  C19 C 0 1 N N N N N N 9.427  -12.673 -3.867 -6.556 1.944  1.021  C19  X3L 19 
X3L C25  C20 C 0 1 N N N N N N 13.121 -9.410  -1.665 3.555  -2.776 1.485  C25  X3L 20 
X3L C27  C21 C 0 1 N N R N N N 14.206 -6.794  -0.265 4.987  -0.627 -1.243 C27  X3L 21 
X3L C29  C22 C 0 1 N N N N N N 14.247 -5.380  0.401  5.361  0.689  -0.611 C29  X3L 22 
X3L N02  N1  N 0 1 N N N N N N 13.034 -5.070  1.075  4.417  1.407  0.036  N02  X3L 23 
X3L N07  N2  N 0 1 N N N N N N 8.403  -8.374  0.864  -0.750 -0.668 0.317  N07  X3L 24 
X3L N09  N3  N 0 1 Y N N N N N 7.030  -10.121 0.067  -1.610 1.312  -0.579 N09  X3L 25 
X3L N16  N4  N 0 1 Y N N N N N 10.125 -9.365  -5.328 -7.224 -1.493 -0.067 N16  X3L 26 
X3L N17  N5  N 0 1 Y N N N N N 10.221 -10.739 -5.356 -7.611 -0.269 0.493  N17  X3L 27 
X3L N20  N6  N 0 1 Y N N N N N 8.652  -9.280  -1.331 -3.056 -0.360 0.103  N20  X3L 28 
X3L N23  N7  N 0 1 N N N N N N 12.933 -7.025  -0.874 3.975  -1.306 -0.429 N23  X3L 29 
X3L O30  O1  O 0 1 N N N N N N 15.159 -4.616  0.405  6.500  1.100  -0.682 O30  X3L 30 
X3L H101 H1  H 0 0 N N N N N N 5.814  -11.683 -0.621 -2.424 3.064  -1.375 H101 X3L 31 
X3L H151 H2  H 0 0 N N N N N N 8.197  -7.209  -4.349 -4.637 -3.110 -0.245 H151 X3L 32 
X3L H152 H3  H 0 0 N N N N N N 9.089  -7.417  -2.804 -5.735 -3.134 -1.646 H152 X3L 33 
X3L H153 H4  H 0 0 N N N N N N 9.957  -6.859  -4.274 -4.316 -2.060 -1.646 H153 X3L 34 
X3L H211 H5  H 0 0 N N N N N N 10.608 -8.487  -0.848 1.441  -2.032 -0.249 H211 X3L 35 
X3L H241 H6  H 0 0 N N N N N N 11.706 -7.945  -2.287 5.460  -2.435 0.538  H241 X3L 36 
X3L H261 H7  H 0 0 N N N N N N 13.251 -6.371  -3.400 5.269  -1.132 2.697  H261 X3L 37 
X3L H263 H8  H 0 0 N N N N N N 14.626 -7.454  -2.996 5.769  -0.146 1.302  H263 X3L 38 
X3L H262 H9  H 0 0 N N N N N N 13.326 -8.025  -4.095 4.091  -0.069 1.890  H262 X3L 39 
X3L H283 H10 H 0 0 N N N N N N 15.543 -7.586  1.248  6.717  -1.572 -0.375 H283 X3L 40 
X3L H282 H11 H 0 0 N N N N N N 13.797 -7.786  1.619  5.940  -2.510 -1.673 H282 X3L 41 
X3L H281 H12 H 0 0 N N N N N N 14.578 -8.830  0.383  6.922  -1.081 -2.074 H281 X3L 42 
X3L H011 H13 H 0 0 N N N N N N 11.884 -3.723  2.192  5.068  2.542  1.676  H011 X3L 43 
X3L H012 H14 H 0 0 N N N N N N 13.652 -3.668  2.501  5.550  3.172  0.082  H012 X3L 44 
X3L H013 H15 H 0 0 N N N N N N 12.984 -2.979  0.982  3.866  3.341  0.633  H013 X3L 45 
X3L H041 H16 H 0 0 N N N N N N 10.899 -5.065  2.735  2.217  2.770  0.606  H041 X3L 46 
X3L H051 H17 H 0 0 N N N N N N 8.919  -6.545  2.573  -0.064 1.849  0.728  H051 X3L 47 
X3L H111 H18 H 0 0 N N N N N N 6.994  -11.729 -2.811 -4.751 2.251  -1.091 H111 X3L 48 
X3L H192 H19 H 0 0 N N N N N N 9.923  -13.313 -4.611 -6.888 2.624  0.236  H192 X3L 49 
X3L H193 H20 H 0 0 N N N N N N 9.887  -12.833 -2.881 -7.222 2.026  1.879  H193 X3L 50 
X3L H191 H21 H 0 0 N N N N N N 8.358  -12.928 -3.819 -5.541 2.205  1.322  H191 X3L 51 
X3L H252 H22 H 0 0 N N N N N N 12.531 -9.737  -0.796 3.282  -3.589 0.812  H252 X3L 52 
X3L H253 H23 H 0 0 N N N N N N 12.892 -10.054 -2.527 3.996  -3.188 2.392  H253 X3L 53 
X3L H251 H24 H 0 0 N N N N N N 14.193 -9.482  -1.428 2.664  -2.202 1.741  H251 X3L 54 
X3L H271 H25 H 0 0 N N N N N N 14.993 -6.827  -1.033 4.585  -0.447 -2.241 H271 X3L 55 
X3L H071 H26 H 0 0 N N N N N N 7.787  -8.271  1.645  -0.893 -1.576 0.628  H071 X3L 56 
X3L H161 H27 H 0 0 N N N N N N 10.510 -8.755  -6.020 -7.796 -2.267 -0.191 H161 X3L 57 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
X3L N17 N16  SING Y N 1  
X3L N17 C18  DOUB Y N 2  
X3L N16 C14  SING Y N 3  
X3L C18 C19  SING N N 4  
X3L C18 C13  SING Y N 5  
X3L C14 C15  SING N N 6  
X3L C14 C13  DOUB Y N 7  
X3L C13 C12  SING N N 8  
X3L C26 C24  SING N N 9  
X3L C12 C11  DOUB Y N 10 
X3L C12 N20  SING Y N 11 
X3L C11 C10  SING Y N 12 
X3L C24 C25  SING N N 13 
X3L C24 N23  SING N N 14 
X3L N20 C08  DOUB Y N 15 
X3L N23 C27  SING N N 16 
X3L N23 C22  SING N N 17 
X3L C10 N09  DOUB Y N 18 
X3L C27 C29  SING N N 19 
X3L C27 C28  SING N N 20 
X3L C08 N09  SING Y N 21 
X3L C08 N07  SING N N 22 
X3L C21 C22  DOUB Y N 23 
X3L C21 C06  SING Y N 24 
X3L C22 C03  SING Y N 25 
X3L C29 O30  DOUB N N 26 
X3L C29 N02  SING N N 27 
X3L C06 N07  SING N N 28 
X3L C06 C05  DOUB Y N 29 
X3L C03 N02  SING N N 30 
X3L C03 C04  DOUB Y N 31 
X3L N02 C01  SING N N 32 
X3L C05 C04  SING Y N 33 
X3L C10 H101 SING N N 34 
X3L C15 H151 SING N N 35 
X3L C15 H152 SING N N 36 
X3L C15 H153 SING N N 37 
X3L C21 H211 SING N N 38 
X3L C24 H241 SING N N 39 
X3L C26 H261 SING N N 40 
X3L C26 H263 SING N N 41 
X3L C26 H262 SING N N 42 
X3L C28 H283 SING N N 43 
X3L C28 H282 SING N N 44 
X3L C28 H281 SING N N 45 
X3L C01 H011 SING N N 46 
X3L C01 H012 SING N N 47 
X3L C01 H013 SING N N 48 
X3L C04 H041 SING N N 49 
X3L C05 H051 SING N N 50 
X3L C11 H111 SING N N 51 
X3L C19 H192 SING N N 52 
X3L C19 H193 SING N N 53 
X3L C19 H191 SING N N 54 
X3L C25 H252 SING N N 55 
X3L C25 H253 SING N N 56 
X3L C25 H251 SING N N 57 
X3L C27 H271 SING N N 58 
X3L N07 H071 SING N N 59 
X3L N16 H161 SING N N 60 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
X3L InChI            InChI                1.06  "InChI=1S/C22H27N7O/c1-12(2)29-15(5)21(30)28(6)18-8-7-16(11-19(18)29)24-22-23-10-9-17(25-22)20-13(3)26-27-14(20)4/h7-12,15H,1-6H3,(H,26,27)(H,23,24,25)/t15-/m1/s1" 
X3L InChIKey         InChI                1.06  QXGVEYHHHIIWTF-OAHLLOKOSA-N                                                                                                                                         
X3L SMILES_CANONICAL CACTVS               3.385 "CC(C)N1[C@H](C)C(=O)N(C)c2ccc(Nc3nccc(n3)c4c(C)[nH]nc4C)cc12"                                                                                                      
X3L SMILES           CACTVS               3.385 "CC(C)N1[CH](C)C(=O)N(C)c2ccc(Nc3nccc(n3)c4c(C)[nH]nc4C)cc12"                                                                                                       
X3L SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1c(c(n[nH]1)C)c2ccnc(n2)Nc3ccc4c(c3)N([C@@H](C(=O)N4C)C)C(C)C"                                                                                                   
X3L SMILES           "OpenEye OEToolkits" 2.0.7 "Cc1c(c(n[nH]1)C)c2ccnc(n2)Nc3ccc4c(c3)N(C(C(=O)N4C)C)C(C)C"                                                                                                        
# 
_pdbx_chem_comp_identifier.comp_id           X3L 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "(3~{R})-6-[[4-(3,5-dimethyl-1~{H}-pyrazol-4-yl)pyrimidin-2-yl]amino]-1,3-dimethyl-4-propan-2-yl-3~{H}-quinoxalin-2-one" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
X3L "Create component" 2023-10-20 PDBJ 
X3L "Initial release"  2024-07-24 RCSB 
# 
