data_Z5L
#

_chem_comp.id                                   Z5L
_chem_comp.name                                 "methyl 2-thio-alpha-D-mannopyranoside"
_chem_comp.type                                 D-saccharide
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C7 H14 O5 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2012-12-18
_chem_comp.pdbx_modified_date                   2020-07-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       210.248
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    Z5L
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       1X9D
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
Z5L  S2   S2   S  0  1  N  N  N   2.759   -5.803  -0.496   2.096   0.362   1.527  S2   Z5L   1  
Z5L  C2   C2   C  0  1  N  N  S   2.918   -7.077   0.784   1.396   0.831  -0.080  C2   Z5L   2  
Z5L  C1   C1   C  0  1  N  N  S   3.993   -8.069   0.411   0.040   1.509   0.131  C1   Z5L   3  
Z5L  O1   O1   O  0  1  N  N  N   4.209   -8.893   1.557  -0.486   1.926  -1.131  O1   Z5L   4  
Z5L  C1M  C1M  C  0  1  N  N  N   5.377   -9.728   1.466  -1.637   2.767  -1.032  C1M  Z5L   5  
Z5L  O5   O5   O  0  1  N  N  N   3.592   -8.831  -0.720  -0.863   0.586   0.742  O5   Z5L   6  
Z5L  C3   C3   C  0  1  N  N  S   1.611   -7.844   1.050   1.204  -0.421  -0.940  C3   Z5L   7  
Z5L  O3   O3   O  0  1  N  N  N   0.589   -6.898   1.339   2.453  -1.101  -1.081  O3   Z5L   8  
Z5L  C4   C4   C  0  1  N  N  S   1.225   -8.756  -0.126   0.192  -1.346  -0.257  C4   Z5L   9  
Z5L  O4   O4   O  0  1  N  N  N   0.158   -9.646   0.278  -0.050  -2.485  -1.085  O4   Z5L  10  
Z5L  C5   C5   C  0  1  N  N  R   2.393   -9.621  -0.554  -1.118  -0.584  -0.039  C5   Z5L  11  
Z5L  C6   C6   C  0  1  N  N  N   2.071  -10.262  -1.885  -2.114  -1.482   0.697  C6   Z5L  12  
Z5L  O6   O6   O  0  1  N  N  N   3.033  -11.285  -2.161  -3.373  -0.813   0.799  O6   Z5L  13  
Z5L  H2   H2   H  0  1  N  N  N   3.214   -6.548   1.702   2.074   1.520  -0.585  H2   Z5L  14  
Z5L  H1   H1   H  0  1  N  N  N   4.914   -7.514   0.177   0.164   2.378   0.777  H1   Z5L  15  
Z5L  H31  H31  H  0  1  N  N  N   5.472  -10.328   2.383  -2.432   2.234  -0.512  H31  Z5L  16  
Z5L  H32  H32  H  0  1  N  N  N   5.282  -10.397   0.598  -1.381   3.669  -0.477  H32  Z5L  17  
Z5L  H33  H33  H  0  1  N  N  N   6.270   -9.097   1.347  -1.974   3.040  -2.032  H33  Z5L  18  
Z5L  H3   H3   H  0  1  N  N  N   1.772   -8.483   1.931   0.832  -0.135  -1.924  H3   Z5L  19  
Z5L  HO3  HO3  H  0  1  N  Y  N  -0.227   -7.354   1.506   3.144  -0.571  -1.501  HO3  Z5L  20  
Z5L  H4   H4   H  0  1  N  N  N   0.903   -8.133  -0.973   0.588  -1.673   0.705  H4   Z5L  21  
Z5L  HO4  HO4  H  0  1  N  Y  N  -0.079  -10.208  -0.450   0.739  -3.013  -1.269  HO4  Z5L  22  
Z5L  H5   H5   H  0  1  N  N  N   2.557  -10.407   0.198  -1.534  -0.294  -1.004  H5   Z5L  23  
Z5L  H61  H61  H  0  1  N  N  N   1.065  -10.704  -1.846  -2.241  -2.413   0.146  H61  Z5L  24  
Z5L  H62  H62  H  0  1  N  N  N   2.106   -9.500  -2.678  -1.737  -1.700   1.697  H62  Z5L  25  
Z5L  HO6  HO6  H  0  1  N  Y  N   2.834  -11.690  -2.997  -4.055  -1.325   1.255  HO6  Z5L  26  
Z5L  HS2  HS2  H  0  1  N  Y  N   1.810   -5.055  -0.016   2.201   1.541   2.166  HS2  Z5L  27  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
Z5L  S2   C2   SING  N  N   1  
Z5L  C2   C1   SING  N  N   2  
Z5L  C2   C3   SING  N  N   3  
Z5L  C2   H2   SING  N  N   4  
Z5L  C1   O1   SING  N  N   5  
Z5L  C1   O5   SING  N  N   6  
Z5L  C1   H1   SING  N  N   7  
Z5L  O1   C1M  SING  N  N   8  
Z5L  C1M  H31  SING  N  N   9  
Z5L  C1M  H32  SING  N  N  10  
Z5L  C1M  H33  SING  N  N  11  
Z5L  O5   C5   SING  N  N  12  
Z5L  C3   O3   SING  N  N  13  
Z5L  C3   C4   SING  N  N  14  
Z5L  C3   H3   SING  N  N  15  
Z5L  O3   HO3  SING  N  N  16  
Z5L  C4   O4   SING  N  N  17  
Z5L  C4   C5   SING  N  N  18  
Z5L  C4   H4   SING  N  N  19  
Z5L  O4   HO4  SING  N  N  20  
Z5L  C5   C6   SING  N  N  21  
Z5L  C5   H5   SING  N  N  22  
Z5L  C6   O6   SING  N  N  23  
Z5L  C6   H61  SING  N  N  24  
Z5L  C6   H62  SING  N  N  25  
Z5L  O6   HO6  SING  N  N  26  
Z5L  S2   HS2  SING  N  N  27  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
Z5L  SMILES            ACDLabs               12.01  "SC1C(O)C(O)C(OC1OC)CO"  
Z5L  InChI             InChI                 1.03   "InChI=1S/C7H14O5S/c1-11-7-6(13)5(10)4(9)3(2-8)12-7/h3-10,13H,2H2,1H3/t3-,4-,5+,6+,7+/m1/s1"  
Z5L  InChIKey          InChI                 1.03   VHSKYAXEXJLKPC-VEIUFWFVSA-N  
Z5L  SMILES_CANONICAL  CACTVS                3.370  "CO[C@H]1O[C@H](CO)[C@@H](O)[C@H](O)[C@@H]1S"  
Z5L  SMILES            CACTVS                3.370  "CO[CH]1O[CH](CO)[CH](O)[CH](O)[CH]1S"  
Z5L  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.6  "CO[C@@H]1[C@H]([C@H]([C@@H]([C@H](O1)CO)O)O)S"  
Z5L  SMILES            "OpenEye OEToolkits"  1.7.6  "COC1C(C(C(C(O1)CO)O)O)S"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
Z5L  "SYSTEMATIC NAME"  ACDLabs               12.01  "methyl 2-thio-alpha-D-mannopyranoside"  
Z5L  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.7.6  "(2R,3S,4S,5S,6S)-2-(hydroxymethyl)-6-methoxy-5-sulfanyl-oxane-3,4-diol"  
#   #
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
Z5L  "CARBOHYDRATE ISOMER"                  D         PDB  ?  
Z5L  "CARBOHYDRATE RING"                    pyranose  PDB  ?  
Z5L  "CARBOHYDRATE ANOMER"                  alpha     PDB  ?  
Z5L  "CARBOHYDRATE PRIMARY CARBONYL GROUP"  aldose    PDB  ?  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
Z5L  "Create component"          2012-12-18  RCSB  
Z5L  "Modify atom id"            2020-05-09  RCSB  
Z5L  "Modify component atom id"  2020-07-17  RCSB  
Z5L  "Initial release"           2020-07-29  RCSB  
##
