data_0SM
#

_chem_comp.id                                   0SM
_chem_comp.name                                 "TRIMETHYL-[2-[[(2S,3S)-2-(OCTADECANOYLAMINO)-3-OXIDANYL-BUTOXY]-OXIDANYL-PHOSPHORYL]OXYETHYL]AZANIUM"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C27 H58 N2 O6 P"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        N-OCTADECANOYL-D-ERYTHRO-SPHINGOSYLPHOSPHORYLCHOLINE
_chem_comp.pdbx_formal_charge                   1
_chem_comp.pdbx_initial_date                    2011-08-10
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       537.733
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    0SM
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       3ZXG
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 EBI
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
0SM  C1    C1    C  0  1  N  N  N   -6.286  -36.110  10.529   -6.031   2.214  -0.643  C1    0SM   1  
0SM  C3    C3    C  0  1  N  N  N   -6.177  -38.682  12.269   -4.016   2.258   2.638  C3    0SM   2  
0SM  C4    C4    C  0  1  N  N  N   -1.526  -34.541   9.919   -9.312  -1.873  -1.266  C4    0SM   3  
0SM  C5    C5    C  0  1  N  N  N   -0.962  -33.105   9.948   -9.361  -3.241  -0.583  C5    0SM   4  
0SM  C6    C6    C  0  1  N  N  N    0.340  -33.150   7.878  -10.821  -2.256   1.046  C6    0SM   5  
0SM  C7    C7    C  0  1  N  N  N    1.466  -33.641   9.927   -9.787  -4.375   1.488  C7    0SM   6  
0SM  C8    C8    C  0  1  N  N  N    0.680  -31.435   9.485   -8.462  -2.375   1.466  C8    0SM   7  
0SM  C11   C11   C  0  1  N  N  N   -9.389  -37.875   9.518   -2.458   1.849   0.140  C11   0SM   8  
0SM  C12   C12   C  0  1  N  N  N   -9.672  -39.393   9.672   -1.336   0.946  -0.302  C12   0SM   9  
0SM  C13   C13   C  0  1  N  N  N  -10.329  -39.668  11.029    0.002   1.533   0.153  C13   0SM  10  
0SM  C14   C14   C  0  1  N  N  N  -11.445  -40.712  10.987    1.141   0.616  -0.296  C14   0SM  11  
0SM  C15   C15   C  0  1  N  N  N  -12.740  -40.055  10.496    2.478   1.203   0.159  C15   0SM  12  
0SM  C16   C16   C  0  1  N  N  N  -13.823  -41.087  10.177    3.617   0.286  -0.290  C16   0SM  13  
0SM  C17   C17   C  0  1  N  N  N  -14.424  -41.700  11.445    4.955   0.873   0.165  C17   0SM  14  
0SM  C18   C18   C  0  1  N  N  N  -15.487  -42.730  11.079    6.094  -0.044  -0.285  C18   0SM  15  
0SM  C19   C19   C  0  1  N  N  N  -15.983  -43.554  12.283    7.431   0.543   0.170  C19   0SM  16  
0SM  C20   C20   C  0  1  N  N  N  -17.409  -44.010  11.995    8.570  -0.374  -0.279  C20   0SM  17  
0SM  C21   C21   C  0  1  N  N  N  -17.496  -45.176  10.996    9.908   0.213   0.176  C21   0SM  18  
0SM  C22   C22   C  0  1  N  N  N  -18.907  -45.744  10.755   11.047  -0.704  -0.273  C22   0SM  19  
0SM  C23   C23   C  0  1  N  N  N  -19.747  -45.686  12.041   12.384  -0.117   0.182  C23   0SM  20  
0SM  C24   C24   C  0  1  N  N  N  -20.020  -47.059  12.634   13.524  -1.034  -0.267  C24   0SM  21  
0SM  C25   C25   C  0  1  N  N  N  -20.890  -46.922  13.882   14.861  -0.447   0.188  C25   0SM  22  
0SM  C26   C26   C  0  1  N  N  N  -20.183  -47.456  15.141   16.000  -1.364  -0.262  C26   0SM  23  
0SM  C27   C27   C  0  1  N  N  N  -21.173  -47.635  16.309   17.338  -0.776   0.193  C27   0SM  24  
0SM  C28   C28   C  0  1  N  N  N  -22.306  -48.597  15.960   18.477  -1.694  -0.256  C28   0SM  25  
0SM  N     N     N  1  1  N  N  N    0.365  -32.872   9.327   -9.608  -3.062   0.854  N     0SM  26  
0SM  O2    O2    O  0  1  N  N  N   -4.918  -38.942  10.254   -5.654   0.703   1.777  O2    0SM  27  
0SM  O11   O11   O  0  1  N  N  N  -10.134  -37.211   8.803   -2.212   2.863   0.759  O11   0SM  28  
0SM  O1P   O1P   O  0  1  N  N  N   -2.853  -37.161   9.987   -7.448   0.286  -2.886  O1P   0SM  29  
0SM  O2P   O2P   O  0  1  N  N  N   -3.895  -36.321  12.132   -8.961   1.228  -1.098  O2P   0SM  30  
0SM  O3P   O3P   O  0  1  N  N  N   -5.033  -35.789   9.904   -6.535   0.885  -0.494  O3P   0SM  31  
0SM  NBQ   NBQ   N  0  1  N  N  N   -8.369  -37.266  10.133   -3.735   1.530  -0.151  NBQ   0SM  32  
0SM  O4P   O4P   O  0  1  N  N  N   -2.801  -34.578  10.567   -8.169  -1.151  -0.805  O4P   0SM  33  
0SM  CBV   CBV   C  0  1  N  N  S   -6.888  -37.449  10.053   -4.825   2.409   0.279  CBV   0SM  34  
0SM  P     P     P  0  1  N  N  N   -3.648  -35.957  10.714   -7.804   0.332  -1.316  P     0SM  35  
0SM  CBU   CBU   C  0  1  N  N  S   -6.251  -38.694  10.737   -5.222   2.063   1.716  CBU   0SM  36  
0SM  H11C  H11C  H  0  0  N  N  N   -6.128  -36.166  11.616   -5.726   2.374  -1.677  H11C  0SM  37  
0SM  H12C  H12C  H  0  0  N  N  N   -7.003  -35.307  10.304   -6.810   2.930  -0.379  H12C  0SM  38  
0SM  HBV   HBV   H  0  1  N  N  N   -6.639  -37.532   8.985   -4.496   3.447   0.233  HBV   0SM  39  
0SM  H31C  H31C  H  0  0  N  N  N   -7.179  -38.495  12.684   -3.687   3.296   2.592  H31C  0SM  40  
0SM  H32C  H32C  H  0  0  N  N  N   -5.809  -39.655  12.626   -4.299   2.012   3.662  H32C  0SM  41  
0SM  H33C  H33C  H  0  0  N  N  N   -5.490  -37.888  12.597   -3.205   1.604   2.318  H33C  0SM  42  
0SM  HBU   HBU   H  0  1  N  N  N   -6.875  -39.556  10.458   -6.033   2.717   2.036  HBU   0SM  43  
0SM  H41C  H41C  H  0  0  N  N  N   -1.638  -34.867   8.875   -9.245  -2.009  -2.346  H41C  0SM  44  
0SM  H42C  H42C  H  0  0  N  N  N   -0.832  -35.216  10.441  -10.216  -1.315  -1.026  H42C  0SM  45  
0SM  H51C  H51C  H  0  0  N  N  N   -1.685  -32.458   9.430  -10.163  -3.837  -1.018  H51C  0SM  46  
0SM  H52C  H52C  H  0  0  N  N  N   -0.889  -32.802  11.003   -8.409  -3.754  -0.726  H52C  0SM  47  
0SM  H61C  H61C  H  0  0  N  N  N    1.337  -32.967   7.452  -11.671  -2.765   0.592  H61C  0SM  48  
0SM  H62C  H62C  H  0  0  N  N  N    0.057  -34.200   7.711  -11.004  -2.123   2.112  H62C  0SM  49  
0SM  H63C  H63C  H  0  0  N  N  N   -0.393  -32.490   7.391  -10.687  -1.281   0.576  H63C  0SM  50  
0SM  H71C  H71C  H  0  0  N  N  N    2.405  -33.405   9.405   -8.887  -4.973   1.346  H71C  0SM  51  
0SM  H72C  H72C  H  0  0  N  N  N    1.561  -33.376  10.990   -9.970  -4.242   2.554  H72C  0SM  52  
0SM  H73C  H73C  H  0  0  N  N  N    1.255  -34.717   9.834  -10.637  -4.884   1.034  H73C  0SM  53  
0SM  H81C  H81C  H  0  0  N  N  N    1.661  -31.222   9.035   -8.446  -1.335   1.141  H81C  0SM  54  
0SM  H82C  H82C  H  0  0  N  N  N   -0.092  -30.833   8.983   -8.552  -2.415   2.552  H82C  0SM  55  
0SM  H83C  H83C  H  0  0  N  N  N    0.705  -31.181  10.555   -7.538  -2.866   1.160  H83C  0SM  56  
0SM  H121  H121  H  0  0  N  N  N  -10.346  -39.721   8.867   -1.469  -0.042   0.140  H121  0SM  57  
0SM  H122  H122  H  0  0  N  N  N   -8.725  -39.949   9.606   -1.345   0.861  -1.389  H122  0SM  58  
0SM  HBQ   HBQ   H  0  1  N  N  N   -8.653  -36.549  10.770   -3.931   0.720  -0.646  HBQ   0SM  59  
0SM  H131  H131  H  0  0  N  N  N   -9.552  -40.022  11.723    0.134   2.520  -0.289  H131  0SM  60  
0SM  H132  H132  H  0  0  N  N  N  -10.753  -38.725  11.404    0.010   1.617   1.240  H132  0SM  61  
0SM  H141  H141  H  0  0  N  N  N  -11.162  -41.524  10.301    1.008  -0.372   0.146  H141  0SM  62  
0SM  H142  H142  H  0  0  N  N  N  -11.601  -41.122  11.995    1.132   0.531  -1.383  H142  0SM  63  
0SM  H151  H151  H  0  0  N  N  N  -13.114  -39.379  11.279    2.611   2.190  -0.283  H151  0SM  64  
0SM  H152  H152  H  0  0  N  N  N  -12.522  -39.477   9.586    2.487   1.288   1.245  H152  0SM  65  
0SM  H161  H161  H  0  0  N  N  N  -14.625  -40.595   9.606    3.485  -0.702   0.152  H161  0SM  66  
0SM  H162  H162  H  0  0  N  N  N  -13.380  -41.890   9.570    3.609   0.201  -1.377  H162  0SM  67  
0SM  H171  H171  H  0  0  N  N  N  -13.628  -42.190  12.024    5.087   1.860  -0.278  H171  0SM  68  
0SM  H172  H172  H  0  0  N  N  N  -14.882  -40.905  12.051    4.963   0.958   1.251  H172  0SM  69  
0SM  H181  H181  H  0  0  N  N  N  -16.347  -42.203  10.640    5.961  -1.031   0.158  H181  0SM  70  
0SM  H182  H182  H  0  0  N  N  N  -15.062  -43.420  10.336    6.085  -0.129  -1.371  H182  0SM  71  
0SM  H191  H191  H  0  0  N  N  N  -15.334  -44.430  12.427    7.564   1.531  -0.272  H191  0SM  72  
0SM  H192  H192  H  0  0  N  N  N  -15.967  -42.933  13.191    7.440   0.628   1.257  H192  0SM  73  
0SM  H201  H201  H  0  0  N  N  N  -17.869  -44.329  12.942    8.438  -1.361   0.163  H201  0SM  74  
0SM  H202  H202  H  0  0  N  N  N  -17.970  -43.158  11.583    8.562  -0.459  -1.366  H202  0SM  75  
0SM  H211  H211  H  0  0  N  N  N  -17.104  -44.824  10.030   10.040   1.201  -0.266  H211  0SM  76  
0SM  H212  H212  H  0  0  N  N  N  -16.863  -45.992  11.373    9.917   0.298   1.263  H212  0SM  77  
0SM  H221  H221  H  0  0  N  N  N  -19.405  -45.153   9.972   10.915  -1.691   0.169  H221  0SM  78  
0SM  H222  H222  H  0  0  N  N  N  -18.823  -46.790  10.426   11.038  -0.789  -1.360  H222  0SM  79  
0SM  H231  H231  H  0  0  N  N  N  -19.207  -45.083  12.786   12.517   0.871  -0.260  H231  0SM  80  
0SM  H232  H232  H  0  0  N  N  N  -20.709  -45.206  11.810   12.393  -0.032   1.269  H232  0SM  81  
0SM  H241  H241  H  0  0  N  N  N  -20.543  -47.680  11.891   13.391  -2.021   0.175  H241  0SM  82  
0SM  H242  H242  H  0  0  N  N  N  -19.066  -47.536  12.905   13.515  -1.118  -1.354  H242  0SM  83  
0SM  H251  H251  H  0  0  N  N  N  -21.129  -45.859  14.033   14.994   0.541  -0.255  H251  0SM  84  
0SM  H252  H252  H  0  0  N  N  N  -21.820  -47.489  13.730   14.870  -0.362   1.274  H252  0SM  85  
0SM  H261  H261  H  0  0  N  N  N  -19.724  -48.428  14.909   15.868  -2.351   0.181  H261  0SM  86  
0SM  H262  H262  H  0  0  N  N  N  -19.400  -46.744  15.441   15.991  -1.448  -1.348  H262  0SM  87  
0SM  H271  H271  H  0  0  N  N  N  -20.628  -48.030  17.179   17.470   0.211  -0.249  H271  0SM  88  
0SM  H272  H272  H  0  0  N  N  N  -21.605  -46.655  16.561   17.346  -0.692   1.280  H272  0SM  89  
0SM  H281  H281  H  0  0  N  N  N  -22.985  -48.693  16.820   18.344  -2.681   0.186  H281  0SM  90  
0SM  H282  H282  H  0  0  N  N  N  -22.864  -48.208  15.095   18.468  -1.778  -1.343  H282  0SM  91  
0SM  H283  H283  H  0  0  N  N  N  -21.886  -49.583  15.713   19.430  -1.275   0.068  H283  0SM  92  
0SM  H2    H2    H  0  1  N  N  N   -4.923  -38.957   9.304   -5.921   0.414   2.661  H2    0SM  93  
0SM  H1P   H1P   H  0  1  N  N  N   -2.701  -37.862  10.610   -6.697  -0.284  -3.102  H1P   0SM  94  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
0SM  C1   O3P   SING  N  N   1  
0SM  C1   CBV   SING  N  N   2  
0SM  C3   CBU   SING  N  N   3  
0SM  C4   C5    SING  N  N   4  
0SM  C4   O4P   SING  N  N   5  
0SM  C5   N     SING  N  N   6  
0SM  C6   N     SING  N  N   7  
0SM  C7   N     SING  N  N   8  
0SM  C8   N     SING  N  N   9  
0SM  C11  C12   SING  N  N  10  
0SM  C11  O11   DOUB  N  N  11  
0SM  C11  NBQ   SING  N  N  12  
0SM  C12  C13   SING  N  N  13  
0SM  C13  C14   SING  N  N  14  
0SM  C14  C15   SING  N  N  15  
0SM  C15  C16   SING  N  N  16  
0SM  C16  C17   SING  N  N  17  
0SM  C17  C18   SING  N  N  18  
0SM  C18  C19   SING  N  N  19  
0SM  C19  C20   SING  N  N  20  
0SM  C20  C21   SING  N  N  21  
0SM  C21  C22   SING  N  N  22  
0SM  C22  C23   SING  N  N  23  
0SM  C23  C24   SING  N  N  24  
0SM  C24  C25   SING  N  N  25  
0SM  C25  C26   SING  N  N  26  
0SM  C26  C27   SING  N  N  27  
0SM  C27  C28   SING  N  N  28  
0SM  O2   CBU   SING  N  N  29  
0SM  O1P  P     SING  N  N  30  
0SM  O2P  P     DOUB  N  N  31  
0SM  O3P  P     SING  N  N  32  
0SM  O4P  P     SING  N  N  33  
0SM  NBQ  CBV   SING  N  N  34  
0SM  CBV  CBU   SING  N  N  35  
0SM  C1   H11C  SING  N  N  36  
0SM  C1   H12C  SING  N  N  37  
0SM  CBV  HBV   SING  N  N  38  
0SM  C3   H31C  SING  N  N  39  
0SM  C3   H32C  SING  N  N  40  
0SM  C3   H33C  SING  N  N  41  
0SM  CBU  HBU   SING  N  N  42  
0SM  C4   H41C  SING  N  N  43  
0SM  C4   H42C  SING  N  N  44  
0SM  C5   H51C  SING  N  N  45  
0SM  C5   H52C  SING  N  N  46  
0SM  C6   H61C  SING  N  N  47  
0SM  C6   H62C  SING  N  N  48  
0SM  C6   H63C  SING  N  N  49  
0SM  C7   H71C  SING  N  N  50  
0SM  C7   H72C  SING  N  N  51  
0SM  C7   H73C  SING  N  N  52  
0SM  C8   H81C  SING  N  N  53  
0SM  C8   H82C  SING  N  N  54  
0SM  C8   H83C  SING  N  N  55  
0SM  C12  H121  SING  N  N  56  
0SM  C12  H122  SING  N  N  57  
0SM  NBQ  HBQ   SING  N  N  58  
0SM  C13  H131  SING  N  N  59  
0SM  C13  H132  SING  N  N  60  
0SM  C14  H141  SING  N  N  61  
0SM  C14  H142  SING  N  N  62  
0SM  C15  H151  SING  N  N  63  
0SM  C15  H152  SING  N  N  64  
0SM  C16  H161  SING  N  N  65  
0SM  C16  H162  SING  N  N  66  
0SM  C17  H171  SING  N  N  67  
0SM  C17  H172  SING  N  N  68  
0SM  C18  H181  SING  N  N  69  
0SM  C18  H182  SING  N  N  70  
0SM  C19  H191  SING  N  N  71  
0SM  C19  H192  SING  N  N  72  
0SM  C20  H201  SING  N  N  73  
0SM  C20  H202  SING  N  N  74  
0SM  C21  H211  SING  N  N  75  
0SM  C21  H212  SING  N  N  76  
0SM  C22  H221  SING  N  N  77  
0SM  C22  H222  SING  N  N  78  
0SM  C23  H231  SING  N  N  79  
0SM  C23  H232  SING  N  N  80  
0SM  C24  H241  SING  N  N  81  
0SM  C24  H242  SING  N  N  82  
0SM  C25  H251  SING  N  N  83  
0SM  C25  H252  SING  N  N  84  
0SM  C26  H261  SING  N  N  85  
0SM  C26  H262  SING  N  N  86  
0SM  C27  H271  SING  N  N  87  
0SM  C27  H272  SING  N  N  88  
0SM  C28  H281  SING  N  N  89  
0SM  C28  H282  SING  N  N  90  
0SM  C28  H283  SING  N  N  91  
0SM  O2   H2    SING  N  N  92  
0SM  O1P  H1P   SING  N  N  93  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
0SM  SMILES            ACDLabs               12.01  "O=P(OCC(NC(=O)CCCCCCCCCCCCCCCCC)C(O)C)(OCC[N+](C)(C)C)O"  
0SM  InChI             InChI                 1.03   "InChI=1S/C27H57N2O6P/c1-6-7-8-9-10-11-12-13-14-15-16-17-18-19-20-21-27(31)28-26(25(2)30)24-35-36(32,33)34-23-22-29(3,4)5/h25-26,30H,6-24H2,1-5H3,(H-,28,31,32,33)/p+1/t25-,26-/m0/s1"  
0SM  InChIKey          InChI                 1.03   HJYAGZCWSLDECN-UIOOFZCWSA-O  
0SM  SMILES_CANONICAL  CACTVS                3.385  "CCCCCCCCCCCCCCCCCC(=O)N[C@@H](CO[P](O)(=O)OCC[N+](C)(C)C)[C@H](C)O"  
0SM  SMILES            CACTVS                3.385  "CCCCCCCCCCCCCCCCCC(=O)N[CH](CO[P](O)(=O)OCC[N+](C)(C)C)[CH](C)O"  
0SM  SMILES_CANONICAL  "OpenEye OEToolkits"  1.9.2  "CCCCCCCCCCCCCCCCCC(=O)N[C@@H](COP(=O)(O)OCC[N+](C)(C)C)[C@H](C)O"  
0SM  SMILES            "OpenEye OEToolkits"  1.9.2  "CCCCCCCCCCCCCCCCCC(=O)NC(COP(=O)(O)OCC[N+](C)(C)C)C(C)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
0SM  "SYSTEMATIC NAME"  ACDLabs               12.01  "(4S,7S)-4-hydroxy-7-[(1S)-1-hydroxyethyl]-N,N,N-trimethyl-9-oxo-3,5-dioxa-8-aza-4-phosphahexacosan-1-aminium 4-oxide"  
0SM  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.9.2  "trimethyl-[2-[[(2S,3S)-2-(octadecanoylamino)-3-oxidanyl-butoxy]-oxidanyl-phosphoryl]oxyethyl]azanium"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
0SM  "Create component"   2011-08-10  EBI   
0SM  "Initial release"    2012-09-14  RCSB  
0SM  "Modify descriptor"  2014-09-05  RCSB  
0SM  "Modify synonyms"    2020-06-05  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     0SM
_pdbx_chem_comp_synonyms.name        N-OCTADECANOYL-D-ERYTHRO-SPHINGOSYLPHOSPHORYLCHOLINE
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
