data_DPM
# 
_chem_comp.id                                    DPM 
_chem_comp.name                                  "3-[5-{[3-(2-carboxyethyl)-4-(carboxymethyl)-5-methyl-1H-pyrrol-2-yl]methyl}-4-(carboxymethyl)-1H-pyrrol-3-yl]propanoic acid" 
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C20 H24 N2 O8" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         "DIPYRROMETHANE COFACTOR" 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     1999-07-08 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        420.413 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     DPM 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        1PDA 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              N 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
DPM C1A  C1A  C 0 1 Y N N N N N 15.792 0.736  27.331 2.559  2.585  0.185  C1A  DPM 1  
DPM C2A  C2A  C 0 1 Y N N N N N 16.421 0.239  28.504 3.285  1.469  -0.030 C2A  DPM 2  
DPM C3A  C3A  C 0 1 Y N N N N N 17.111 1.296  29.086 2.520  0.620  -0.854 C3A  DPM 3  
DPM C4A  C4A  C 0 1 Y N N N N N 16.943 2.443  28.270 1.355  1.249  -1.111 C4A  DPM 4  
DPM C5A  C5A  C 0 1 N N N N N N 16.368 -1.176 29.040 4.662  1.183  0.512  C5A  DPM 5  
DPM C6A  C6A  C 0 1 N N N N N N 17.493 -2.086 28.490 4.544  0.489  1.844  C6A  DPM 6  
DPM C7A  C7A  C 0 1 N N N N N N 17.808 1.354  30.454 2.928  -0.742 -1.355 C7A  DPM 7  
DPM C8A  C8A  C 0 1 N N N N N N 19.263 1.110  30.370 2.480  -1.809 -0.355 C8A  DPM 8  
DPM C9A  C9A  C 0 1 N N N N N N 19.768 1.034  31.862 2.888  -3.170 -0.857 C9A  DPM 9  
DPM CHA  CHA  C 0 1 N N N N N N 14.851 0.062  26.378 2.985  3.770  1.012  CHA  DPM 10 
DPM NA   NA   N 0 1 Y N N N N N 16.097 2.128  27.198 1.376  2.458  -0.481 NA   DPM 11 
DPM O1A  O1A  O 0 1 N N N N N N 18.420 -1.704 27.801 3.453  0.252  2.307  O1A  DPM 12 
DPM O2A  O2A  O 0 1 N N N N N N 17.442 -3.320 28.800 5.650  0.136  2.517  O2A  DPM 13 
DPM O3A  O3A  O 0 1 N N N N N N 20.775 0.293  32.051 3.477  -3.276 -1.906 O3A  DPM 14 
DPM O4A  O4A  O 0 1 N N N N N N 19.403 1.733  32.855 2.597  -4.266 -0.137 O4A  DPM 15 
DPM C1B  C1B  C 0 1 Y N N N N N 17.394 4.882  27.828 -0.658 -0.166 -1.109 C1B  DPM 16 
DPM C2B  C2B  C 0 1 Y N N N N N 17.994 6.154  28.228 -1.674 0.254  -0.330 C2B  DPM 17 
DPM C3B  C3B  C 0 1 Y N N N N N 17.861 7.031  27.137 -2.235 -0.884 0.283  C3B  DPM 18 
DPM C4B  C4B  C 0 1 Y N N N N N 17.165 6.391  26.066 -1.539 -1.957 -0.146 C4B  DPM 19 
DPM C5B  C5B  C 0 1 N N N N N N 18.627 6.407  29.585 -2.128 1.680  -0.146 C5B  DPM 20 
DPM C6B  C6B  C 0 1 N N N N N N 17.646 7.023  30.642 -3.176 2.010  -1.177 C6B  DPM 21 
DPM C7B  C7B  C 0 1 N N N N N N 18.504 8.432  27.100 -3.398 -0.900 1.241  C7B  DPM 22 
DPM C8B  C8B  C 0 1 N N N N N N 19.901 8.193  26.498 -4.708 -0.928 0.452  C8B  DPM 23 
DPM C9B  C9B  C 0 1 N N N N N N 20.599 9.530  26.032 -5.871 -0.943 1.411  C9B  DPM 24 
DPM CHB  CHB  C 0 1 N N N N N N 17.382 3.753  28.664 0.229  0.712  -1.955 CHB  DPM 25 
DPM NB   NB   N 0 1 Y N N N N N 16.896 5.048  26.511 -0.566 -1.522 -0.996 NB   DPM 26 
DPM O1B  O1B  O 0 1 N N N N N N 17.637 6.711  31.856 -3.520 1.173  -1.979 O1B  DPM 27 
DPM O2B  O2B  O 0 1 N N N N N N 16.841 7.959  30.344 -3.728 3.233  -1.205 O2B  DPM 28 
DPM O3B  O3B  O 0 1 N N N N N N 19.967 10.172 25.198 -5.672 -0.934 2.603  O3B  DPM 29 
DPM O4B  O4B  O 0 1 N N N N N N 21.751 9.845  26.347 -7.128 -0.968 0.941  O4B  DPM 30 
DPM H5A1 H5A1 H 0 0 N N N N N N 16.456 -1.137 30.136 5.200  0.540  -0.185 H5A1 DPM 31 
DPM H5A2 H5A2 H 0 0 N N N N N N 15.398 -1.616 28.765 5.206  2.119  0.636  H5A2 DPM 32 
DPM H7A1 H7A1 H 0 0 N N N N N N 17.644 2.351  30.889 2.459  -0.929 -2.321 H7A1 DPM 33 
DPM H7A2 H7A2 H 0 0 N N N N N N 17.361 0.590  31.108 4.012  -0.779 -1.464 H7A2 DPM 34 
DPM H8A1 H8A1 H 0 0 N N N N N N 19.464 0.163  29.848 2.949  -1.622 0.611  H8A1 DPM 35 
DPM H8A2 H8A2 H 0 0 N N N N N N 19.760 1.934  29.838 1.396  -1.772 -0.246 H8A2 DPM 36 
DPM HCA1 HCA1 H 0 0 N N N N N N 13.819 0.167  26.745 3.505  4.488  0.378  HCA1 DPM 37 
DPM HCA2 HCA2 H 0 0 N N N N N N 14.937 0.529  25.386 2.105  4.242  1.450  HCA2 DPM 38 
DPM HCA3 HCA3 H 0 0 N N N N N N 15.106 -1.005 26.304 3.652  3.437  1.808  HCA3 DPM 39 
DPM H10  H10  H 0 1 N N N N N N 15.772 2.750  26.485 0.664  3.117  -0.498 ?    ?   40 
DPM HOA2 HOA2 H 0 0 N N N N N N 18.184 -3.774 28.419 5.524  -0.306 3.368  HOA2 DPM 41 
DPM HOA4 HOA4 H 0 0 N N N N N N 19.979 1.564  33.591 2.879  -5.117 -0.500 HOA4 DPM 42 
DPM H4B1 H4B1 H 0 0 N N N N N N 16.895 6.826  25.115 -1.719 -2.983 0.138  H4B1 DPM 43 
DPM H5B1 H5B1 H 0 0 N N N N N N 19.000 5.449  29.977 -2.548 1.802  0.852  H5B1 DPM 44 
DPM H5B2 H5B2 H 0 0 N N N N N N 19.470 7.101  29.450 -1.276 2.350  -0.266 H5B2 DPM 45 
DPM H7B1 H7B1 H 0 0 N N N N N N 17.918 9.113  26.466 -3.335 -1.786 1.873  H7B1 DPM 46 
DPM H7B2 H7B2 H 0 0 N N N N N N 18.583 8.851  28.114 -3.367 -0.007 1.864  H7B2 DPM 47 
DPM H8B1 H8B1 H 0 0 N N N N N N 20.534 7.711  27.258 -4.771 -0.041 -0.179 H8B1 DPM 48 
DPM H8B2 H8B2 H 0 0 N N N N N N 19.800 7.527  25.629 -4.739 -1.821 -0.171 H8B2 DPM 49 
DPM HCB1 HCB1 H 0 0 N N N N N N 16.750 4.029  29.521 -0.355 1.542  -2.353 HCB1 DPM 50 
DPM HCB2 HCB2 H 0 0 N N N N N N 18.422 3.626  29.000 0.638  0.128  -2.779 HCB2 DPM 51 
DPM H22  H22  H 0 1 N N N N N N 16.431 4.343  25.975 0.080  -2.085 -1.451 ?    ?   52 
DPM HOB2 HOB2 H 0 0 N N N N N N 16.381 8.242  31.125 -4.396 3.398  -1.885 HOB2 DPM 53 
DPM HOB4 HOB4 H 0 0 N N N N N N 22.016 10.613 25.855 -7.841 -0.978 1.594  HOB4 DPM 54 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
DPM C1A C2A  DOUB Y N 1  
DPM C1A CHA  SING N N 2  
DPM C1A NA   SING Y N 3  
DPM C2A C3A  SING Y N 4  
DPM C2A C5A  SING N N 5  
DPM C3A C4A  DOUB Y N 6  
DPM C3A C7A  SING N N 7  
DPM C4A NA   SING Y N 8  
DPM C4A CHB  SING N N 9  
DPM C5A C6A  SING N N 10 
DPM C6A O1A  DOUB N N 11 
DPM C6A O2A  SING N N 12 
DPM C7A C8A  SING N N 13 
DPM C8A C9A  SING N N 14 
DPM C9A O3A  DOUB N N 15 
DPM C9A O4A  SING N N 16 
DPM C1B C2B  DOUB Y N 17 
DPM C1B CHB  SING N N 18 
DPM C1B NB   SING Y N 19 
DPM C2B C3B  SING Y N 20 
DPM C2B C5B  SING N N 21 
DPM C3B C4B  DOUB Y N 22 
DPM C3B C7B  SING N N 23 
DPM C4B NB   SING Y N 24 
DPM C5B C6B  SING N N 25 
DPM C6B O1B  DOUB N N 26 
DPM C6B O2B  SING N N 27 
DPM C7B C8B  SING N N 28 
DPM C8B C9B  SING N N 29 
DPM C9B O3B  DOUB N N 30 
DPM C9B O4B  SING N N 31 
DPM C5A H5A1 SING N N 32 
DPM C5A H5A2 SING N N 33 
DPM C7A H7A1 SING N N 34 
DPM C7A H7A2 SING N N 35 
DPM C8A H8A1 SING N N 36 
DPM C8A H8A2 SING N N 37 
DPM CHA HCA1 SING N N 38 
DPM CHA HCA2 SING N N 39 
DPM CHA HCA3 SING N N 40 
DPM NA  H10  SING N N 41 
DPM O2A HOA2 SING N N 42 
DPM O4A HOA4 SING N N 43 
DPM C4B H4B1 SING N N 44 
DPM C5B H5B1 SING N N 45 
DPM C5B H5B2 SING N N 46 
DPM C7B H7B1 SING N N 47 
DPM C7B H7B2 SING N N 48 
DPM C8B H8B1 SING N N 49 
DPM C8B H8B2 SING N N 50 
DPM CHB HCB1 SING N N 51 
DPM CHB HCB2 SING N N 52 
DPM NB  H22  SING N N 53 
DPM O2B HOB2 SING N N 54 
DPM O4B HOB4 SING N N 55 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
DPM SMILES           ACDLabs              12.01 "O=C(O)Cc1c(ncc1CCC(=O)O)Cc2c(c(c(n2)C)CC(=O)O)CCC(=O)O"                                                                                                               
DPM InChI            InChI                1.03  "InChI=1S/C20H24N2O8/c1-10-13(6-19(27)28)12(3-5-18(25)26)16(22-10)8-15-14(7-20(29)30)11(9-21-15)2-4-17(23)24/h9,21-22H,2-8H2,1H3,(H,23,24)(H,25,26)(H,27,28)(H,29,30)" 
DPM InChIKey         InChI                1.03  LCAXMKQKEYTFDM-UHFFFAOYSA-N                                                                                                                                            
DPM SMILES_CANONICAL CACTVS               3.385 "Cc1[nH]c(Cc2[nH]cc(CCC(O)=O)c2CC(O)=O)c(CCC(O)=O)c1CC(O)=O"                                                                                                           
DPM SMILES           CACTVS               3.385 "Cc1[nH]c(Cc2[nH]cc(CCC(O)=O)c2CC(O)=O)c(CCC(O)=O)c1CC(O)=O"                                                                                                           
DPM SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "Cc1c(c(c([nH]1)Cc2c(c(c[nH]2)CCC(=O)O)CC(=O)O)CCC(=O)O)CC(=O)O"                                                                                                       
DPM SMILES           "OpenEye OEToolkits" 1.7.6 "Cc1c(c(c([nH]1)Cc2c(c(c[nH]2)CCC(=O)O)CC(=O)O)CCC(=O)O)CC(=O)O"                                                                                                       
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
DPM "SYSTEMATIC NAME" ACDLabs              12.01 "3-[5-{[3-(2-carboxyethyl)-4-(carboxymethyl)-5-methyl-1H-pyrrol-2-yl]methyl}-4-(carboxymethyl)-1H-pyrrol-3-yl]propanoic acid"                      
DPM "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "3-[4-(2-hydroxy-2-oxoethyl)-5-[[4-(2-hydroxy-2-oxoethyl)-3-(3-hydroxy-3-oxopropyl)-5-methyl-1H-pyrrol-2-yl]methyl]-1H-pyrrol-3-yl]propanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
DPM "Create component"   1999-07-08 RCSB 
DPM "Other modification" 2013-09-12 RCSB 
DPM "Modify synonyms"    2021-03-01 PDBE 
DPM "Modify PCM"         2024-09-27 PDBE 
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      DPM 
_pdbx_chem_comp_synonyms.name         "DIPYRROMETHANE COFACTOR" 
_pdbx_chem_comp_synonyms.provenance   ? 
_pdbx_chem_comp_synonyms.type         ? 
# 
