data_DZM
#

_chem_comp.id                                   DZM
_chem_comp.name                                 3-deaza-3-methyladenine
_chem_comp.type                                 "DNA LINKING"
_chem_comp.pdbx_type                            ATOMN
_chem_comp.formula                              "C12 H17 N4 O6 P"
_chem_comp.mon_nstd_parent_comp_id              DA
_chem_comp.pdbx_synonyms                        "1-(2-deoxy-5-O-phosphono-beta-D-erythro-pentofuranosyl)-7-methyl-1H-imidazo[4,5-c]pyridin-4-amine"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2009-09-24
_chem_comp.pdbx_modified_date                   2021-03-13
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       344.260
_chem_comp.one_letter_code                      A
_chem_comp.three_letter_code                    DZM
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       3JX7
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
DZM  P       P       P  0  1  N  N  N  1.442   9.050  28.540  -4.911   0.869  -0.267  P       DZM   1  
DZM  N1      N1      N  0  1  Y  N  N  1.698   9.231  19.693   5.791   0.420  -0.425  N1      DZM   2  
DZM  C2      C2      C  0  1  Y  N  N  1.546   7.960  19.923   5.248  -0.651  -0.983  C2      DZM   3  
DZM  C3      C3      C  0  1  Y  N  N  1.833   7.418  21.057   3.904  -0.887  -0.916  C3      DZM   4  
DZM  C4      C4      C  0  1  Y  N  N  2.361   8.307  22.130   3.089   0.022  -0.245  C4      DZM   5  
DZM  C5      C5      C  0  1  Y  N  N  2.520   9.643  21.878   3.682   1.154   0.342  C5      DZM   6  
DZM  C6      C6      C  0  1  Y  N  N  2.173  10.103  20.619   5.071   1.319   0.225  C6      DZM   7  
DZM  N6      N6      N  0  1  N  N  N  2.313  11.417  20.323   5.689   2.425   0.793  N6      DZM   8  
DZM  N7      N7      N  0  1  Y  N  N  3.005  10.200  23.003   2.686   1.865   0.923  N7      DZM   9  
DZM  C8      C8      C  0  1  Y  N  N  3.137   9.208  23.920   1.549   1.259   0.735  C8      DZM  10  
DZM  N9      N9      N  0  1  Y  N  N  2.743   8.041  23.386   1.744   0.116   0.020  N9      DZM  11  
DZM  "C1'"   "C1'"   C  0  1  N  N  R  2.735   6.731  24.082   0.710  -0.837  -0.392  "C1'"   DZM  12  
DZM  OP2     OP2     O  0  1  N  N  N  0.936   8.273  29.732  -6.044  -0.164   0.224  OP2     DZM  13  
DZM  "C2'"   "C2'"   C  0  1  N  N  N  3.969   6.551  24.956   0.653  -2.011   0.604  "C2'"   DZM  14  
DZM  OP1     OP1     O  0  1  N  N  N  2.531  10.084  28.698  -4.722   1.919   0.759  OP1     DZM  15  
DZM  "C3'"   "C3'"   C  0  1  N  N  S  3.445   5.939  26.246  -0.803  -1.991   1.132  "C3'"   DZM  16  
DZM  "O3'"   "O3'"   O  0  1  N  N  N  3.879   4.582  26.383  -1.323  -3.317   1.245  "O3'"   DZM  17  
DZM  C3M     C3M     C  0  1  N  N  N  1.626   5.937  21.245   3.310  -2.113  -1.561  C3M     DZM  18  
DZM  "C4'"   "C4'"   C  0  1  N  N  R  1.927   5.981  26.151  -1.540  -1.200   0.021  "C4'"   DZM  19  
DZM  "O4'"   "O4'"   O  0  1  N  N  N  1.604   6.679  24.952  -0.578  -0.199  -0.374  "O4'"   DZM  20  
DZM  "C5'"   "C5'"   C  0  1  N  N  N  1.315   6.713  27.333  -2.805  -0.543   0.576  "C5'"   DZM  21  
DZM  "O5'"   "O5'"   O  0  1  N  N  N  1.933   7.992  27.432  -3.525   0.080  -0.489  "O5'"   DZM  22  
DZM  OP3     OP3     O  0  1  N  Y  N  0.052   9.956  28.087  -5.369   1.549  -1.653  OP3     DZM  23  
DZM  H2      H2      H  0  1  N  N  N  1.164   7.333  19.131   5.882  -1.353  -1.503  H2      DZM  24  
DZM  HN6     HN6     H  0  1  N  N  N  2.022  11.580  19.380   6.649   2.539   0.713  HN6     DZM  25  
DZM  HN6A    HN6A    H  0  0  N  N  N  1.749  11.960  20.944   5.161   3.084   1.270  HN6A    DZM  26  
DZM  H8      H8      H  0  1  N  N  N  3.504   9.338  24.927   0.593   1.610   1.095  H8      DZM  27  
DZM  "H1'"   "H1'"   H  0  1  N  N  N  2.710   5.946  23.312   0.927  -1.210  -1.393  "H1'"   DZM  28  
DZM  HOP2    HOP2    H  0  0  N  N  N  1.403   8.549  30.512  -6.221  -0.880  -0.400  HOP2    DZM  29  
DZM  "H2'"   "H2'"   H  0  1  N  N  N  4.702   5.888  24.473   0.861  -2.953   0.096  "H2'"   DZM  30  
DZM  "H2'A"  "H2'A"  H  0  0  N  N  N  4.462   7.516  25.148   1.357  -1.853   1.421  "H2'A"  DZM  31  
DZM  "H3'"   "H3'"   H  0  1  N  N  N  3.820   6.494  27.119  -0.863  -1.469   2.087  "H3'"   DZM  32  
DZM  "HO3'"  "HO3'"  H  0  0  N  Y  N  3.541   4.221  27.194  -0.836  -3.879   1.863  "HO3'"  DZM  33  
DZM  H3M     H3M     H  0  1  N  N  N  2.543   5.399  20.961   3.204  -2.900  -0.814  H3M     DZM  34  
DZM  H3MA    H3MA    H  0  0  N  N  N  1.391   5.731  22.300   2.332  -1.869  -1.974  H3MA    DZM  35  
DZM  H3MB    H3MB    H  0  0  N  N  N  0.793   5.600  20.611   3.967  -2.458  -2.360  H3MB    DZM  36  
DZM  "H4'"   "H4'"   H  0  1  N  N  N  1.528   4.956  26.152  -1.781  -1.852  -0.818  "H4'"   DZM  37  
DZM  "H5'"   "H5'"   H  0  1  N  N  N  0.232   6.831  27.180  -3.433  -1.301   1.044  "H5'"   DZM  38  
DZM  "H5'A"  "H5'A"  H  0  0  N  N  N  1.487   6.142  28.257  -2.529   0.208   1.317  "H5'A"  DZM  39  
DZM  HOP3    HOP3    H  0  0  N  Y  N  0.276  10.878  28.039  -6.198   2.043  -1.593  HOP3    DZM  40  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
DZM  P      OP2     SING  N  N   1  
DZM  P      OP1     DOUB  N  N   2  
DZM  P      "O5'"   SING  N  N   3  
DZM  N1     C2      SING  Y  N   4  
DZM  N1     C6      DOUB  Y  N   5  
DZM  C2     C3      DOUB  Y  N   6  
DZM  C3     C4      SING  Y  N   7  
DZM  C3     C3M     SING  N  N   8  
DZM  C4     C5      DOUB  Y  N   9  
DZM  C4     N9      SING  Y  N  10  
DZM  C5     C6      SING  Y  N  11  
DZM  C5     N7      SING  Y  N  12  
DZM  C6     N6      SING  N  N  13  
DZM  N7     C8      DOUB  Y  N  14  
DZM  C8     N9      SING  Y  N  15  
DZM  N9     "C1'"   SING  N  N  16  
DZM  "C1'"  "C2'"   SING  N  N  17  
DZM  "C1'"  "O4'"   SING  N  N  18  
DZM  "C2'"  "C3'"   SING  N  N  19  
DZM  "C3'"  "O3'"   SING  N  N  20  
DZM  "C3'"  "C4'"   SING  N  N  21  
DZM  "C4'"  "O4'"   SING  N  N  22  
DZM  "C4'"  "C5'"   SING  N  N  23  
DZM  "C5'"  "O5'"   SING  N  N  24  
DZM  P      OP3     SING  N  N  25  
DZM  C2     H2      SING  N  N  26  
DZM  N6     HN6     SING  N  N  27  
DZM  N6     HN6A    SING  N  N  28  
DZM  C8     H8      SING  N  N  29  
DZM  "C1'"  "H1'"   SING  N  N  30  
DZM  OP2    HOP2    SING  N  N  31  
DZM  "C2'"  "H2'"   SING  N  N  32  
DZM  "C2'"  "H2'A"  SING  N  N  33  
DZM  "C3'"  "H3'"   SING  N  N  34  
DZM  "O3'"  "HO3'"  SING  N  N  35  
DZM  C3M    H3M     SING  N  N  36  
DZM  C3M    H3MA    SING  N  N  37  
DZM  C3M    H3MB    SING  N  N  38  
DZM  "C4'"  "H4'"   SING  N  N  39  
DZM  "C5'"  "H5'"   SING  N  N  40  
DZM  "C5'"  "H5'A"  SING  N  N  41  
DZM  OP3    HOP3    SING  N  N  42  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
DZM  SMILES            ACDLabs               11.02  "O=P(O)(O)OCC3OC(n1cnc2c1c(cnc2N)C)CC3O"  
DZM  SMILES_CANONICAL  CACTVS                3.352  "Cc1cnc(N)c2ncn([C@H]3C[C@H](O)[C@@H](CO[P](O)(O)=O)O3)c12"  
DZM  SMILES            CACTVS                3.352  "Cc1cnc(N)c2ncn([CH]3C[CH](O)[CH](CO[P](O)(O)=O)O3)c12"  
DZM  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.0  "Cc1cnc(c2c1n(cn2)[C@H]3C[C@@H]([C@H](O3)COP(=O)(O)O)O)N"  
DZM  SMILES            "OpenEye OEToolkits"  1.7.0  "Cc1cnc(c2c1n(cn2)C3CC(C(O3)COP(=O)(O)O)O)N"  
DZM  InChI             InChI                 1.03   "InChI=1S/C12H17N4O6P/c1-6-3-14-12(13)10-11(6)16(5-15-10)9-2-7(17)8(22-9)4-21-23(18,19)20/h3,5,7-9,17H,2,4H2,1H3,(H2,13,14)(H2,18,19,20)/t7-,8+,9+/m0/s1"  
DZM  InChIKey          InChI                 1.03   IQDCOTYILQNADN-DJLDLDEBSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
DZM  "SYSTEMATIC NAME"  ACDLabs               11.02  "1-(2-deoxy-5-O-phosphono-beta-D-erythro-pentofuranosyl)-7-methyl-1H-imidazo[4,5-c]pyridin-4-amine"  
DZM  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.6.1  "[(2R,3S,5R)-5-(4-azanyl-7-methyl-imidazo[4,5-c]pyridin-1-yl)-3-hydroxy-oxolan-2-yl]methyl dihydrogen phosphate"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
DZM  "Create component"      2009-09-24  RCSB  
DZM  "Modify aromatic_flag"  2011-06-04  RCSB  
DZM  "Modify descriptor"     2011-06-04  RCSB  
DZM  "Modify synonyms"       2021-03-13  RCSB  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     DZM
_pdbx_chem_comp_synonyms.name        "1-(2-deoxy-5-O-phosphono-beta-D-erythro-pentofuranosyl)-7-methyl-1H-imidazo[4,5-c]pyridin-4-amine"
_pdbx_chem_comp_synonyms.provenance  PDB
_pdbx_chem_comp_synonyms.type        ?
##
