data_GTM
#

_chem_comp.id                                   GTM
_chem_comp.name                                 "methyl 4-thio-beta-D-glucopyranoside"
_chem_comp.type                                 D-saccharide
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C7 H14 O5 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        
;O1-METHYL-4-DEOXY-4-THIO-BETA-D-GLUCOSE; methyl 4-thio-beta-D-glucoside; methyl 4-thio-D-glucoside; methyl
4-thio-glucoside
;

_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2003-02-07
_chem_comp.pdbx_modified_date                   2020-07-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       210.248
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    GTM
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       ?
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       1OCB
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 EBI
#   #
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1  GTM  O1-METHYL-4-DEOXY-4-THIO-BETA-D-GLUCOSE    PDB  ?  
2  GTM  "methyl 4-thio-beta-D-glucoside"           PDB  ?  
3  GTM  "methyl 4-thio-D-glucoside"                PDB  ?  
4  GTM  "methyl 4-thio-glucoside"                  PDB  ?  
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
GTM  C1    C1    C  0  1  N  N  R  3.916  -24.241  6.553  -0.039  -0.199   1.540  C1    GTM   1  
GTM  C2    C2    C  0  1  N  N  R  3.454  -23.092  7.430  -1.387   0.269   0.990  C2    GTM   2  
GTM  C3    C3    C  0  1  N  N  R  2.179  -22.442  6.870  -1.508  -0.166  -0.474  C3    GTM   3  
GTM  C4    C4    C  0  1  N  N  S  2.347  -22.009  5.419  -0.280   0.340  -1.238  C4    GTM   4  
GTM  C5    C5    C  0  1  N  N  R  2.851  -23.184  4.609   0.985  -0.133  -0.519  C5    GTM   5  
GTM  C6    C6    C  0  1  N  N  N  3.224  -22.701  3.228   2.216   0.340  -1.294  C6    GTM   6  
GTM  C7    C7    C  0  1  N  N  N  5.910  -25.538  6.063   1.340  -0.292   3.372  C7    GTM   7  
GTM  O1    O1    O  0  1  N  N  N  5.180  -24.759  6.995   0.068   0.173   2.915  O1    GTM   8  
GTM  O2    O2    O  0  1  N  N  N  3.273  -23.637  8.741  -2.445  -0.315   1.752  O2    GTM   9  
GTM  O3    O3    O  0  1  N  N  N  1.821  -21.313  7.642  -2.693   0.389  -1.047  O3    GTM  10  
GTM  S4    S4    S  0  1  N  N  N  0.783  -21.436  4.661  -0.300  -0.318  -2.929  S4    GTM  11  
GTM  O5    O5    O  0  1  N  N  N  4.005  -23.793  5.215   1.020   0.403   0.800  O5    GTM  12  
GTM  O6    O6    O  0  1  N  N  N  3.681  -23.835  2.564   3.399  -0.107  -0.629  O6    GTM  13  
GTM  H1    H1    H  0  1  N  N  N  3.184  -25.059  6.622   0.030  -1.284   1.453  H1    GTM  14  
GTM  H2    H2    H  0  1  N  N  N  4.195  -22.279  7.460  -1.450   1.356   1.053  H2    GTM  15  
GTM  H3    H3    H  0  1  N  N  N  1.387  -23.203  6.918  -1.550  -1.254  -0.530  H3    GTM  16  
GTM  H4    H4    H  0  1  N  N  N  3.057  -21.169  5.416  -0.294   1.429  -1.271  H4    GTM  17  
GTM  H5    H5    H  0  1  N  N  N  2.050  -23.937  4.562   0.986  -1.222  -0.468  H5    GTM  18  
GTM  H61   H6C1  H  0  1  N  N  N  4.016  -21.940  3.285   2.190  -0.070  -2.304  H61   GTM  19  
GTM  H62   H6C2  H  0  1  N  N  N  2.375  -22.232  2.710   2.217   1.428  -1.344  H62   GTM  20  
GTM  H7C1  H7C1  H  0  0  N  N  N  5.210  -26.082  5.412   1.468  -0.028   4.422  H7C1  GTM  21  
GTM  H7C2  H7C2  H  0  0  N  N  N  6.543  -24.879  5.451   1.391  -1.375   3.260  H7C2  GTM  22  
GTM  H7C3  H7C3  H  0  0  N  N  N  6.543  -26.257  6.603   2.130   0.171   2.782  H7C3  GTM  23  
GTM  HO2   HB    H  0  1  N  Y  N  2.306  -23.718  8.935  -2.331  -0.015   2.664  HO2   GTM  24  
GTM  HO3   HA    H  0  1  N  Y  N  0.835  -21.244  7.689  -3.438   0.045  -0.537  HO3   GTM  25  
GTM  HS4   HS4   H  0  1  N  N  N  0.888  -21.166  3.756  -1.459   0.202  -3.368  HS4   GTM  26  
GTM  HO6   H6    H  0  1  N  Y  N  2.908  -24.369  2.251   4.150   0.211  -1.148  HO6   GTM  27  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
GTM  C1  C2    SING  N  N   1  
GTM  C1  O1    SING  N  N   2  
GTM  C1  O5    SING  N  N   3  
GTM  C1  H1    SING  N  N   4  
GTM  C2  C3    SING  N  N   5  
GTM  C2  O2    SING  N  N   6  
GTM  C2  H2    SING  N  N   7  
GTM  C3  C4    SING  N  N   8  
GTM  C3  O3    SING  N  N   9  
GTM  C3  H3    SING  N  N  10  
GTM  C4  C5    SING  N  N  11  
GTM  C4  S4    SING  N  N  12  
GTM  C4  H4    SING  N  N  13  
GTM  C5  C6    SING  N  N  14  
GTM  C5  O5    SING  N  N  15  
GTM  C5  H5    SING  N  N  16  
GTM  C6  O6    SING  N  N  17  
GTM  C6  H61   SING  N  N  18  
GTM  C6  H62   SING  N  N  19  
GTM  C7  O1    SING  N  N  20  
GTM  C7  H7C1  SING  N  N  21  
GTM  C7  H7C2  SING  N  N  22  
GTM  C7  H7C3  SING  N  N  23  
GTM  O2  HO2   SING  N  N  24  
GTM  O3  HO3   SING  N  N  25  
GTM  S4  HS4   SING  N  N  26  
GTM  O6  HO6   SING  N  N  27  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
GTM  SMILES            ACDLabs               10.04  "OC1C(O)C(S)C(OC1OC)CO"  
GTM  SMILES_CANONICAL  CACTVS                3.341  "CO[C@@H]1O[C@H](CO)[C@@H](S)[C@H](O)[C@H]1O"  
GTM  SMILES            CACTVS                3.341  "CO[CH]1O[CH](CO)[CH](S)[CH](O)[CH]1O"  
GTM  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "CO[C@H]1[C@@H]([C@H]([C@@H]([C@H](O1)CO)S)O)O"  
GTM  SMILES            "OpenEye OEToolkits"  1.5.0  "COC1C(C(C(C(O1)CO)S)O)O"  
GTM  InChI             InChI                 1.03   "InChI=1S/C7H14O5S/c1-11-7-5(10)4(9)6(13)3(2-8)12-7/h3-10,13H,2H2,1H3/t3-,4-,5-,6-,7-/m1/s1"  
GTM  InChIKey          InChI                 1.03   PFROTWRHYMLGHR-NYMZXIIRSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
GTM  "SYSTEMATIC NAME"            ACDLabs               10.04  "methyl 4-thio-beta-D-glucopyranoside"  
GTM  "SYSTEMATIC NAME"            "OpenEye OEToolkits"  1.5.0  "(2R,3R,4R,5S,6R)-6-(hydroxymethyl)-2-methoxy-5-sulfanyl-oxane-3,4-diol"  
GTM  "IUPAC CARBOHYDRATE SYMBOL"  PDB-CARE              1.0    o1-methyl-4-deoxy-4-thio-b-D-glucose  
#   #
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
GTM  "CARBOHYDRATE ISOMER"                  D         PDB  ?  
GTM  "CARBOHYDRATE RING"                    pyranose  PDB  ?  
GTM  "CARBOHYDRATE ANOMER"                  beta      PDB  ?  
GTM  "CARBOHYDRATE PRIMARY CARBONYL GROUP"  aldose    PDB  ?  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
GTM  "Create component"          2003-02-07  EBI   
GTM  "Modify descriptor"         2011-06-04  RCSB  
GTM  "Other modification"        2020-07-03  RCSB  
GTM  "Modify name"               2020-07-17  RCSB  
GTM  "Modify synonyms"           2020-07-17  RCSB  
GTM  "Modify linking type"       2020-07-17  RCSB  
GTM  "Modify atom id"            2020-07-17  RCSB  
GTM  "Modify component atom id"  2020-07-17  RCSB  
GTM  "Modify leaving atom flag"  2020-07-17  RCSB  
##
