data_H5M
# 
_chem_comp.id                                    H5M 
_chem_comp.name                                  TRANS-3-HYDROXY-5-METHYLPROLINE 
_chem_comp.type                                  "L-PEPTIDE LINKING" 
_chem_comp.pdbx_type                             ATOMP 
_chem_comp.formula                               "C6 H11 N O3" 
_chem_comp.mon_nstd_parent_comp_id               PRO 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     1999-07-08 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        145.156 
_chem_comp.one_letter_code                       P 
_chem_comp.three_letter_code                     H5M 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        ? 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        1A7Z 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
H5M N    N    N 0 1 N N N Y Y N 0.995 20.053 19.459 1.074  -0.489 0.678  N    H5M 1  
H5M CA   CA   C 0 1 N N S Y N N 1.692 19.530 20.659 0.035  -0.519 -0.386 CA   H5M 2  
H5M C    C    C 0 1 N N N Y N Y 1.738 20.534 21.811 0.583  0.011  -1.685 C    H5M 3  
H5M O    O    O 0 1 N N N Y N Y 1.781 21.742 21.567 1.526  0.767  -1.679 O    H5M 4  
H5M OXT  OXT  O 0 1 N Y N Y N Y 1.847 20.053 23.066 0.023  -0.354 -2.849 OXT  H5M 5  
H5M CB   CB   C 0 1 N N S N N N 3.135 19.271 20.160 -1.068 0.416  0.165  CB   H5M 6  
H5M CG   CG   C 0 1 N N N N N N 3.309 20.326 19.071 -1.056 0.110  1.680  CG   H5M 7  
H5M CD   CD   C 0 1 N N S N N N 1.931 20.488 18.413 0.335  -0.486 1.959  CD   H5M 8  
H5M OB   OB   O 0 1 N N N N N N 3.300 17.946 19.713 -2.339 0.097  -0.404 OB   H5M 9  
H5M CD1  CD1  C 0 1 N N N N N N 1.651 21.908 17.955 1.075  0.372  2.986  CD1  H5M 10 
H5M H    HN   H 0 1 N Y N Y Y N 0.347 20.800 19.706 1.569  -1.367 0.625  H    H5M 11 
H5M HA   HA   H 0 1 N N N Y N N 1.167 18.632 21.061 -0.348 -1.531 -0.517 HA   H5M 12 
H5M HXT  HXT  H 0 1 N Y N Y N Y 1.875 20.676 23.781 0.375  -0.013 -3.683 HXT  H5M 13 
H5M HB   HB   H 0 1 N N N N N N 3.916 19.363 20.950 -0.816 1.461  -0.018 HB   H5M 14 
H5M HG2  1HG  H 0 1 N N N N N N 3.738 21.284 19.445 -1.834 -0.612 1.927  HG2  H5M 15 
H5M HG3  2HG  H 0 1 N N N N N N 4.122 20.087 18.346 -1.195 1.027  2.253  HG3  H5M 16 
H5M HD   HD   H 0 1 N N N N N N 1.846 19.890 17.475 0.234  -1.506 2.331  HD   H5M 17 
H5M HOB  HOB  H 0 1 N N N N N N 4.185 17.787 19.406 -2.992 0.658  0.035  HOB  H5M 18 
H5M HD11 1HD1 H 0 0 N N N N N N 2.361 22.238 17.161 2.061  -0.052 3.172  HD11 H5M 19 
H5M HD12 2HD1 H 0 0 N N N N N N 0.592 22.025 17.625 1.183  1.386  2.601  HD12 H5M 20 
H5M HD13 3HD1 H 0 0 N N N N N N 1.647 22.617 18.815 0.508  0.395  3.916  HD13 H5M 21 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
H5M N   CA   SING N N 1  
H5M N   CD   SING N N 2  
H5M N   H    SING N N 3  
H5M CA  C    SING N N 4  
H5M CA  CB   SING N N 5  
H5M CA  HA   SING N N 6  
H5M C   O    DOUB N N 7  
H5M C   OXT  SING N N 8  
H5M OXT HXT  SING N N 9  
H5M CB  CG   SING N N 10 
H5M CB  OB   SING N N 11 
H5M CB  HB   SING N N 12 
H5M CG  CD   SING N N 13 
H5M CG  HG2  SING N N 14 
H5M CG  HG3  SING N N 15 
H5M CD  CD1  SING N N 16 
H5M CD  HD   SING N N 17 
H5M OB  HOB  SING N N 18 
H5M CD1 HD11 SING N N 19 
H5M CD1 HD12 SING N N 20 
H5M CD1 HD13 SING N N 21 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
H5M SMILES           ACDLabs              10.04 "O=C(O)C1NC(C)CC1O"                                                                    
H5M SMILES_CANONICAL CACTVS               3.341 "C[C@H]1C[C@H](O)[C@H](N1)C(O)=O"                                                      
H5M SMILES           CACTVS               3.341 "C[CH]1C[CH](O)[CH](N1)C(O)=O"                                                         
H5M SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C[C@H]1C[C@@H]([C@H](N1)C(=O)O)O"                                                     
H5M SMILES           "OpenEye OEToolkits" 1.5.0 "CC1CC(C(N1)C(=O)O)O"                                                                  
H5M InChI            InChI                1.03  "InChI=1S/C6H11NO3/c1-3-2-4(8)5(7-3)6(9)10/h3-5,7-8H,2H2,1H3,(H,9,10)/t3-,4-,5-/m0/s1" 
H5M InChIKey         InChI                1.03  RVIGBNHLNBRMFX-YUPRTTJUSA-N                                                            
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
H5M "SYSTEMATIC NAME" ACDLabs              10.04 "(3S,5S)-3-hydroxy-5-methyl-L-proline"                        
H5M "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2S,3S,5S)-3-hydroxy-5-methyl-pyrrolidine-2-carboxylic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
H5M "Create component"  1999-07-08 RCSB 
H5M "Modify descriptor" 2011-06-04 RCSB 
H5M "Modify backbone"   2023-11-03 PDBE 
H5M "Modify PCM"        2024-09-27 PDBE 
# 
loop_
_pdbx_chem_comp_pcm.pcm_id 
_pdbx_chem_comp_pcm.comp_id 
_pdbx_chem_comp_pcm.modified_residue_id 
_pdbx_chem_comp_pcm.type 
_pdbx_chem_comp_pcm.category 
_pdbx_chem_comp_pcm.position 
_pdbx_chem_comp_pcm.polypeptide_position 
_pdbx_chem_comp_pcm.comp_id_linking_atom 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession 
1 H5M PRO Methylation   "Named protein modification" "Amino-acid side chain" "Any position" ? ? ? ? 
2 H5M PRO Hydroxylation "Named protein modification" "Amino-acid side chain" "Any position" ? ? ? ? 
# 
