data_KYM
#

_chem_comp.id                                   KYM
_chem_comp.name                                 "(2Z)-2-{[4-(3-cyclopropyl-5,6-dihydro[1,2,4]triazolo[4,3-a]pyrazine-7(8H)-carbonyl)phenyl]methylidene}-3-oxo-2,3-dihydro-1-benzofuran-7-carboxamide"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C25 H21 N5 O4"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2019-01-24
_chem_comp.pdbx_modified_date                   2019-08-09
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       455.465
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    KYM
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6NRI
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
KYM  O2   O1   O  0  1  N  N  N  21.165   -9.711   6.774  -2.048  -1.194  -2.932  O2   KYM   1  
KYM  C13  C1   C  0  1  N  N  N  22.174  -10.325   7.060  -2.158  -0.289  -2.127  C13  KYM   2  
KYM  N1   N1   N  0  1  N  N  N  22.282  -11.654   6.852  -3.380   0.107  -1.721  N1   KYM   3  
KYM  C17  C2   C  0  1  N  N  N  23.354  -12.469   7.421  -3.542   1.262  -0.818  C17  KYM   4  
KYM  C16  C3   C  0  1  Y  N  N  22.569  -13.093   8.539  -4.572   0.871   0.215  C16  KYM   5  
KYM  N3   N2   N  0  1  Y  N  N  22.934  -13.284   9.783  -4.894   1.487   1.311  N3   KYM   6  
KYM  N4   N3   N  0  1  Y  N  N  21.853  -13.873  10.439  -5.826   0.830   1.913  N4   KYM   7  
KYM  C18  C4   C  0  1  Y  N  N  20.888  -14.013   9.556  -6.133  -0.237   1.220  C18  KYM   8  
KYM  C19  C5   C  0  1  N  N  N  19.547  -14.633   9.809  -7.175  -1.266   1.577  C19  KYM   9  
KYM  C21  C6   C  0  1  N  N  N  19.063  -15.745   8.916  -7.816  -1.173   2.963  C21  KYM  10  
KYM  C20  C7   C  0  1  N  N  N  19.423  -16.044  10.319  -8.621  -0.788   1.720  C20  KYM  11  
KYM  N2   N4   N  0  1  Y  N  N  21.282  -13.526   8.331  -5.343  -0.242   0.128  N2   KYM  12  
KYM  C15  C8   C  0  1  N  N  N  20.558  -13.418   7.046  -5.286  -1.225  -0.952  C15  KYM  13  
KYM  C14  C9   C  0  1  N  N  N  21.282  -12.442   6.116  -4.591  -0.596  -2.171  C14  KYM  14  
KYM  C12  C10  C  0  1  Y  N  N  23.380   -9.565   7.511  -0.950   0.373  -1.590  C12  KYM  15  
KYM  C11  C11  C  0  1  Y  N  N  24.494   -9.519   6.677   0.157  -0.393  -1.214  C11  KYM  16  
KYM  C10  C12  C  0  1  Y  N  N  25.605   -8.774   7.023   1.278   0.219  -0.715  C10  KYM  17  
KYM  C22  C13  C  0  1  Y  N  N  23.415   -8.851   8.706  -0.914   1.764  -1.463  C22  KYM  18  
KYM  C23  C14  C  0  1  Y  N  N  24.521   -8.088   9.041   0.205   2.379  -0.965  C23  KYM  19  
KYM  C9   C15  C  0  1  Y  N  N  25.636   -8.021   8.198   1.313   1.612  -0.582  C9   KYM  20  
KYM  C8   C16  C  0  1  N  N  N  26.836   -7.216   8.387   2.513   2.270  -0.047  C8   KYM  21  
KYM  C7   C17  C  0  1  N  N  N  27.169   -6.320   9.319   3.631   1.543   0.203  C7   KYM  22  
KYM  C6   C18  C  0  1  N  N  N  28.286   -5.378   9.248   4.935   2.072   0.639  C6   KYM  23  
KYM  O1   O2   O  0  1  N  N  N  29.125   -5.302   8.351   5.238   3.233   0.850  O1   KYM  24  
KYM  O3   O3   O  0  1  N  N  N  26.437   -6.070  10.464   3.750   0.199   0.101  O3   KYM  25  
KYM  C24  C19  C  0  1  Y  N  N  27.019   -5.017  11.144   4.991  -0.221   0.418  C24  KYM  26  
KYM  C1   C20  C  0  1  Y  N  N  26.663   -4.474  12.383   5.555  -1.508   0.451  C1   KYM  27  
KYM  C    C21  C  0  1  N  N  N  25.504   -4.928  13.207   4.737  -2.683   0.095  C    KYM  28  
KYM  O    O4   O  0  1  N  N  N  25.167   -4.269  14.205   3.574  -2.539  -0.228  O    KYM  29  
KYM  N    N5   N  0  1  N  N  N  24.870   -6.042  12.831   5.280  -3.917   0.127  N    KYM  30  
KYM  C5   C22  C  0  1  Y  N  N  28.136   -4.549  10.463   5.793   0.876   0.764  C5   KYM  31  
KYM  C4   C23  C  0  1  Y  N  N  28.923   -3.546  11.020   7.123   0.692   1.134  C4   KYM  32  
KYM  C3   C24  C  0  1  Y  N  N  28.578   -3.011  12.250   7.664  -0.578   1.159  C3   KYM  33  
KYM  C2   C25  C  0  1  Y  N  N  27.457   -3.460  12.921   6.890  -1.672   0.821  C2   KYM  34  
KYM  H1   H1   H  0  1  N  N  N  23.732  -13.217   6.709  -2.594   1.489  -0.331  H1   KYM  35  
KYM  H2   H2   H  0  1  N  N  N  24.191  -11.858   7.790  -3.889   2.128  -1.380  H2   KYM  36  
KYM  H3   H3   H  0  1  N  N  N  18.767  -13.940  10.157  -7.012  -2.262   1.163  H3   KYM  37  
KYM  H4   H4   H  0  1  N  N  N  18.009  -15.777   8.601  -8.075  -2.106   3.461  H4   KYM  38  
KYM  H5   H5   H  0  1  N  N  N  19.701  -16.108   8.097  -7.484  -0.366   3.617  H5   KYM  39  
KYM  H6   H6   H  0  1  N  N  N  18.636  -16.298  11.045  -8.819   0.271   1.556  H6   KYM  40  
KYM  H7   H7   H  0  1  N  N  N  20.328  -16.629  10.540  -9.410  -1.469   1.401  H7   KYM  41  
KYM  H8   H8   H  0  1  N  N  N  19.537  -13.053   7.233  -4.725  -2.099  -0.621  H8   KYM  42  
KYM  H9   H9   H  0  1  N  N  N  20.512  -14.408   6.570  -6.298  -1.525  -1.225  H9   KYM  43  
KYM  H10  H10  H  0  1  N  N  N  20.545  -11.759   5.668  -5.265   0.112  -2.653  H10  KYM  44  
KYM  H11  H11  H  0  1  N  N  N  21.787  -13.010   5.321  -4.316  -1.377  -2.880  H11  KYM  45  
KYM  H12  H12  H  0  1  N  N  N  24.490  -10.072   5.749   0.129  -1.468  -1.317  H12  KYM  46  
KYM  H13  H13  H  0  1  N  N  N  26.466   -8.774   6.372   2.132  -0.373  -0.424  H13  KYM  47  
KYM  H14  H14  H  0  1  N  N  N  22.571   -8.893   9.378  -1.768   2.355  -1.758  H14  KYM  48  
KYM  H15  H15  H  0  1  N  N  N  24.523   -7.535   9.969   0.233   3.454  -0.868  H15  KYM  49  
KYM  H16  H16  H  0  1  N  N  N  27.595   -7.373   7.635   2.506   3.332   0.148  H16  KYM  50  
KYM  H17  H17  H  0  1  N  N  N  24.090   -6.376  13.360   6.208  -4.032   0.385  H17  KYM  51  
KYM  H18  H18  H  0  1  N  N  N  25.175   -6.542  12.020   4.742  -4.689  -0.107  H18  KYM  52  
KYM  H19  H19  H  0  1  N  N  N  29.797   -3.187  10.497   7.732   1.543   1.401  H19  KYM  53  
KYM  H20  H20  H  0  1  N  N  N  29.190   -2.237  12.688   8.696  -0.718   1.446  H20  KYM  54  
KYM  H21  H21  H  0  1  N  N  N  27.192   -3.022  13.872   7.322  -2.661   0.846  H21  KYM  55  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
KYM  C14  N1   SING  N  N   1  
KYM  C14  C15  SING  N  N   2  
KYM  C11  C10  DOUB  Y  N   3  
KYM  C11  C12  SING  Y  N   4  
KYM  O2   C13  DOUB  N  N   5  
KYM  N1   C13  SING  N  N   6  
KYM  N1   C17  SING  N  N   7  
KYM  C10  C9   SING  Y  N   8  
KYM  C15  N2   SING  N  N   9  
KYM  C13  C12  SING  N  N  10  
KYM  C17  C16  SING  N  N  11  
KYM  C12  C22  DOUB  Y  N  12  
KYM  C9   C8   SING  N  N  13  
KYM  C9   C23  DOUB  Y  N  14  
KYM  N2   C16  SING  Y  N  15  
KYM  N2   C18  SING  Y  N  16  
KYM  O1   C6   DOUB  N  N  17  
KYM  C8   C7   DOUB  N  Z  18  
KYM  C16  N3   DOUB  Y  N  19  
KYM  C22  C23  SING  Y  N  20  
KYM  C21  C19  SING  N  N  21  
KYM  C21  C20  SING  N  N  22  
KYM  C6   C7   SING  N  N  23  
KYM  C6   C5   SING  N  N  24  
KYM  C7   O3   SING  N  N  25  
KYM  C18  C19  SING  N  N  26  
KYM  C18  N4   DOUB  Y  N  27  
KYM  N3   N4   SING  Y  N  28  
KYM  C19  C20  SING  N  N  29  
KYM  C5   C4   DOUB  Y  N  30  
KYM  C5   C24  SING  Y  N  31  
KYM  O3   C24  SING  N  N  32  
KYM  C4   C3   SING  Y  N  33  
KYM  C24  C1   DOUB  Y  N  34  
KYM  C3   C2   DOUB  Y  N  35  
KYM  C1   C2   SING  Y  N  36  
KYM  C1   C    SING  N  N  37  
KYM  N    C    SING  N  N  38  
KYM  C    O    DOUB  N  N  39  
KYM  C17  H1   SING  N  N  40  
KYM  C17  H2   SING  N  N  41  
KYM  C19  H3   SING  N  N  42  
KYM  C21  H4   SING  N  N  43  
KYM  C21  H5   SING  N  N  44  
KYM  C20  H6   SING  N  N  45  
KYM  C20  H7   SING  N  N  46  
KYM  C15  H8   SING  N  N  47  
KYM  C15  H9   SING  N  N  48  
KYM  C14  H10  SING  N  N  49  
KYM  C14  H11  SING  N  N  50  
KYM  C11  H12  SING  N  N  51  
KYM  C10  H13  SING  N  N  52  
KYM  C22  H14  SING  N  N  53  
KYM  C23  H15  SING  N  N  54  
KYM  C8   H16  SING  N  N  55  
KYM  N    H17  SING  N  N  56  
KYM  N    H18  SING  N  N  57  
KYM  C4   H19  SING  N  N  58  
KYM  C3   H20  SING  N  N  59  
KYM  C2   H21  SING  N  N  60  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
KYM  SMILES            ACDLabs               12.01  "O=C(c1ccc(cc1)\C=C2/Oc3c(cccc3C2=O)C(=O)N)N6Cc5nnc(C4CC4)n5CC6"  
KYM  InChI             InChI                 1.03   "InChI=1S/C25H21N5O4/c26-23(32)18-3-1-2-17-21(31)19(34-22(17)18)12-14-4-6-16(7-5-14)25(33)29-10-11-30-20(13-29)27-28-24(30)15-8-9-15/h1-7,12,15H,8-11,13H2,(H2,26,32)/b19-12-"  
KYM  InChIKey          InChI                 1.03   JJCAYWVTBMMQMQ-UNOMPAQXSA-N  
KYM  SMILES_CANONICAL  CACTVS                3.385  "NC(=O)c1cccc2C(=O)/C(Oc12)=C/c3ccc(cc3)C(=O)N4CCn5c(C4)nnc5C6CC6"  
KYM  SMILES            CACTVS                3.385  "NC(=O)c1cccc2C(=O)C(Oc12)=Cc3ccc(cc3)C(=O)N4CCn5c(C4)nnc5C6CC6"  
KYM  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "c1cc2c(c(c1)C(=O)N)O/C(=C\c3ccc(cc3)C(=O)N4CCn5c(nnc5C6CC6)C4)/C2=O"  
KYM  SMILES            "OpenEye OEToolkits"  2.0.7  "c1cc2c(c(c1)C(=O)N)OC(=Cc3ccc(cc3)C(=O)N4CCn5c(nnc5C6CC6)C4)C2=O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
KYM  "SYSTEMATIC NAME"  ACDLabs               12.01  "(2Z)-2-{[4-(3-cyclopropyl-5,6-dihydro[1,2,4]triazolo[4,3-a]pyrazine-7(8H)-carbonyl)phenyl]methylidene}-3-oxo-2,3-dihydro-1-benzofuran-7-carboxamide"  
KYM  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "(2~{Z})-2-[[4-[(3-cyclopropyl-6,8-dihydro-5~{H}-[1,2,4]triazolo[4,3-a]pyrazin-7-yl)carbonyl]phenyl]methylidene]-3-oxidanylidene-1-benzofuran-7-carboxamide"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
KYM  "Create component"  2019-01-24  RCSB  
KYM  "Initial release"   2019-08-14  RCSB  
##
