data_OPM
#

_chem_comp.id                                   OPM
_chem_comp.name                                 "pentyl alpha-D-mannopyranoside"
_chem_comp.type                                 D-saccharide
_chem_comp.pdbx_type                            ATOMS
_chem_comp.formula                              "C11 H22 O6"
_chem_comp.mon_nstd_parent_comp_id              MAN
_chem_comp.pdbx_synonyms                        "O1-PENTYL-MANNOSE; pentyl alpha-D-mannoside; pentyl D-mannoside; pentyl mannoside"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2002-07-10
_chem_comp.pdbx_modified_date                   2020-07-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       250.289
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    OPM
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       ?
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       1M5J
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1  OPM  O1-PENTYL-MANNOSE           PDB  ?  
2  OPM  "pentyl alpha-D-mannoside"  PDB  ?  
3  OPM  "pentyl D-mannoside"        PDB  ?  
4  OPM  "pentyl mannoside"          PDB  ?  
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
OPM  "C3'"   "C3'"   C  0  1  N  N  N  21.035  59.110  140.405   0.319  -0.129   3.969  "C3'"   OPM   1  
OPM  "C4'"   "C4'"   C  0  1  N  N  N  21.709  60.205  141.264   0.485   0.884   5.103  "C4'"   OPM   2  
OPM  "C5'"   "C5'"   C  0  1  N  N  N  22.768  59.599  142.196  -0.056   0.287   6.404  "C5'"   OPM   3  
OPM  "C1'"   "C1'"   C  0  1  N  N  N  20.476  60.255  138.120   0.695  -0.547   1.534  "C1'"   OPM   4  
OPM  "C2'"   "C2'"   C  0  1  N  N  N  19.954  59.632  139.436   0.860   0.466   2.668  "C2'"   OPM   5  
OPM  C2      C2      C  0  1  N  N  S  21.039  57.251  136.028   1.546  -0.443  -2.028  C2      OPM   6  
OPM  O2      O2      O  0  1  N  N  N  20.218  56.108  135.831   1.339  -1.417  -3.052  O2      OPM   7  
OPM  C3      C3      C  0  1  N  N  S  21.660  57.705  134.674   0.793   0.842  -2.383  C3      OPM   8  
OPM  O3      O3      O  0  1  N  N  N  22.163  56.575  133.910   1.166   1.274  -3.693  O3      OPM   9  
OPM  C4      C4      C  0  1  N  N  S  20.638  58.458  133.808  -0.712   0.554  -2.347  C4      OPM  10  
OPM  O4      O4      O  0  1  N  N  N  21.307  59.040  132.701  -1.438   1.771  -2.530  O4      OPM  11  
OPM  C5      C5      C  0  1  N  N  R  19.927  59.551  134.616  -1.069  -0.056  -0.990  C5      OPM  12  
OPM  O5      O5      O  0  1  N  N  N  19.286  58.960  135.771  -0.368  -1.286  -0.814  O5      OPM  13  
OPM  C6      C6      C  0  1  N  N  N  18.855  60.316  133.826  -2.576  -0.317  -0.932  C6      OPM  14  
OPM  O6      O6      O  0  1  N  N  N  18.131  59.423  132.946  -2.914  -0.881   0.336  O6      OPM  15  
OPM  O1      O1      O  0  1  N  N  N  21.058  59.364  137.186   1.200   0.009   0.319  O1      OPM  16  
OPM  C1      C1      C  0  1  N  N  S  20.221  58.370  136.698   1.018  -0.979  -0.695  C1      OPM  17  
OPM  "H3'1"  "H3'1"  H  0  0  N  N  N  21.804  58.524  139.849   0.872  -1.037   4.210  "H3'1"  OPM  18  
OPM  "H3'2"  "H3'2"  H  0  0  N  N  N  20.617  58.307  141.056  -0.736  -0.369   3.847  "H3'2"  OPM  19  
OPM  "H4'1"  "H4'1"  H  0  0  N  N  N  22.134  61.019  140.632  -0.067   1.792   4.862  "H4'1"  OPM  20  
OPM  "H4'2"  "H4'2"  H  0  0  N  N  N  20.957  60.804  141.829   1.541   1.123   5.225  "H4'2"  OPM  21  
OPM  "H5'1"  "H5'1"  H  0  0  N  N  N  23.254  60.388  142.815   0.061   1.010   7.211  "H5'1"  OPM  22  
OPM  "H5'2"  "H5'2"  H  0  0  N  N  N  22.342  58.784  142.827  -1.112   0.048   6.282  "H5'2"  OPM  23  
OPM  "H5'3"  "H5'3"  H  0  0  N  N  N  23.519  58.999  141.630   0.496  -0.620   6.644  "H5'3"  OPM  24  
OPM  "H1'1"  "H1'1"  H  0  0  N  N  N  19.658  60.832  137.628   1.248  -1.455   1.775  "H1'1"  OPM  25  
OPM  "H1'2"  "H1'2"  H  0  0  N  N  N  21.193  61.076  138.352  -0.361  -0.786   1.412  "H1'2"  OPM  26  
OPM  "H2'1"  "H2'1"  H  0  0  N  N  N  19.223  58.820  139.209   0.308   1.374   2.427  "H2'1"  OPM  27  
OPM  "H2'2"  "H2'2"  H  0  0  N  N  N  19.289  60.356  139.962   1.917   0.706   2.790  "H2'2"  OPM  28  
OPM  H2      H2      H  0  1  N  N  N  21.883  56.996  136.709   2.610  -0.229  -1.938  H2      OPM  29  
OPM  HO2     HO2     H  0  1  N  Y  N  19.839  55.831  136.657   1.829  -2.208  -2.789  HO2     OPM  30  
OPM  H3      H3      H  0  1  N  N  N  22.504  58.385  134.932   1.034   1.620  -1.659  H3      OPM  31  
OPM  HO3     HO3     H  0  1  N  Y  N  22.541  56.852  133.084   2.118   1.443  -3.671  HO3     OPM  32  
OPM  H4      H4      H  0  1  N  N  N  19.867  57.733  133.453  -0.968  -0.146  -3.141  H4      OPM  33  
OPM  HO4     HO4     H  0  1  N  Y  N  20.675  59.505  132.165  -1.183   2.121  -3.394  HO4     OPM  34  
OPM  H5      H5      H  0  1  N  N  N  20.720  60.280  134.900  -0.791   0.635  -0.196  H5      OPM  35  
OPM  H61     H61     H  0  1  N  N  N  18.167  60.878  134.500  -3.112   0.622  -1.067  H61     OPM  36  
OPM  H62     H62     H  0  1  N  N  N  19.289  61.180  133.271  -2.855  -1.011  -1.725  H62     OPM  37  
OPM  HO6     HO6     H  0  1  N  Y  N  17.467  59.896  132.457  -3.869  -1.029   0.330  HO6     OPM  38  
OPM  H1      H1      H  0  1  N  N  N  19.656  57.907  137.541   1.567  -1.881  -0.424  H1      OPM  39  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
OPM  "C3'"  "C4'"   SING  N  N   1  
OPM  "C3'"  "C2'"   SING  N  N   2  
OPM  "C3'"  "H3'1"  SING  N  N   3  
OPM  "C3'"  "H3'2"  SING  N  N   4  
OPM  "C4'"  "C5'"   SING  N  N   5  
OPM  "C4'"  "H4'1"  SING  N  N   6  
OPM  "C4'"  "H4'2"  SING  N  N   7  
OPM  "C5'"  "H5'1"  SING  N  N   8  
OPM  "C5'"  "H5'2"  SING  N  N   9  
OPM  "C5'"  "H5'3"  SING  N  N  10  
OPM  "C1'"  "C2'"   SING  N  N  11  
OPM  "C1'"  O1      SING  N  N  12  
OPM  "C1'"  "H1'1"  SING  N  N  13  
OPM  "C1'"  "H1'2"  SING  N  N  14  
OPM  "C2'"  "H2'1"  SING  N  N  15  
OPM  "C2'"  "H2'2"  SING  N  N  16  
OPM  C2     O2      SING  N  N  17  
OPM  C2     C3      SING  N  N  18  
OPM  C2     C1      SING  N  N  19  
OPM  C2     H2      SING  N  N  20  
OPM  O2     HO2     SING  N  N  21  
OPM  C3     O3      SING  N  N  22  
OPM  C3     C4      SING  N  N  23  
OPM  C3     H3      SING  N  N  24  
OPM  O3     HO3     SING  N  N  25  
OPM  C4     O4      SING  N  N  26  
OPM  C4     C5      SING  N  N  27  
OPM  C4     H4      SING  N  N  28  
OPM  O4     HO4     SING  N  N  29  
OPM  C5     O5      SING  N  N  30  
OPM  C5     C6      SING  N  N  31  
OPM  C5     H5      SING  N  N  32  
OPM  O5     C1      SING  N  N  33  
OPM  C6     O6      SING  N  N  34  
OPM  C6     H61     SING  N  N  35  
OPM  C6     H62     SING  N  N  36  
OPM  O6     HO6     SING  N  N  37  
OPM  O1     C1      SING  N  N  38  
OPM  C1     H1      SING  N  N  39  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
OPM  SMILES            ACDLabs               10.04  "O(CCCCC)C1OC(C(O)C(O)C1O)CO"  
OPM  SMILES_CANONICAL  CACTVS                3.341  "CCCCCO[C@H]1O[C@H](CO)[C@@H](O)[C@H](O)[C@@H]1O"  
OPM  SMILES            CACTVS                3.341  "CCCCCO[CH]1O[CH](CO)[CH](O)[CH](O)[CH]1O"  
OPM  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "CCCCCO[C@@H]1[C@H]([C@H]([C@@H]([C@H](O1)CO)O)O)O"  
OPM  SMILES            "OpenEye OEToolkits"  1.5.0  "CCCCCOC1C(C(C(C(O1)CO)O)O)O"  
OPM  InChI             InChI                 1.03   "InChI=1S/C11H22O6/c1-2-3-4-5-16-11-10(15)9(14)8(13)7(6-12)17-11/h7-15H,2-6H2,1H3/t7-,8-,9+,10+,11+/m1/s1"  
OPM  InChIKey          InChI                 1.03   RYIWDDCNJPSPRA-UVOCVTCTSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
OPM  "SYSTEMATIC NAME"            ACDLabs               10.04  "pentyl alpha-D-mannopyranoside"  
OPM  "SYSTEMATIC NAME"            "OpenEye OEToolkits"  1.5.0  "(2R,3S,4S,5S,6S)-2-(hydroxymethyl)-6-pentoxy-oxane-3,4,5-triol"  
OPM  "IUPAC CARBOHYDRATE SYMBOL"  PDB-CARE              1.0    O1-pentyl-mannose  
#
_pdbx_chem_comp_related.comp_id            OPM
_pdbx_chem_comp_related.related_comp_id    MAN
_pdbx_chem_comp_related.relationship_type  "Carbohydrate core"
_pdbx_chem_comp_related.details            ?
#   #
loop_
_pdbx_chem_comp_atom_related.ordinal
_pdbx_chem_comp_atom_related.comp_id
_pdbx_chem_comp_atom_related.atom_id
_pdbx_chem_comp_atom_related.related_comp_id
_pdbx_chem_comp_atom_related.related_atom_id
_pdbx_chem_comp_atom_related.related_type
 1  OPM  C1   MAN  C1   "Carbohydrate core"  
 2  OPM  C2   MAN  C2   "Carbohydrate core"  
 3  OPM  C3   MAN  C3   "Carbohydrate core"  
 4  OPM  C4   MAN  C4   "Carbohydrate core"  
 5  OPM  C5   MAN  C5   "Carbohydrate core"  
 6  OPM  C6   MAN  C6   "Carbohydrate core"  
 7  OPM  O1   MAN  O1   "Carbohydrate core"  
 8  OPM  O2   MAN  O2   "Carbohydrate core"  
 9  OPM  O3   MAN  O3   "Carbohydrate core"  
10  OPM  O4   MAN  O4   "Carbohydrate core"  
11  OPM  O5   MAN  O5   "Carbohydrate core"  
12  OPM  O6   MAN  O6   "Carbohydrate core"  
13  OPM  H1   MAN  H1   "Carbohydrate core"  
14  OPM  H2   MAN  H2   "Carbohydrate core"  
15  OPM  H3   MAN  H3   "Carbohydrate core"  
16  OPM  H4   MAN  H4   "Carbohydrate core"  
17  OPM  H5   MAN  H5   "Carbohydrate core"  
18  OPM  H61  MAN  H61  "Carbohydrate core"  
19  OPM  H62  MAN  H62  "Carbohydrate core"  
20  OPM  HO2  MAN  HO2  "Carbohydrate core"  
21  OPM  HO3  MAN  HO3  "Carbohydrate core"  
22  OPM  HO4  MAN  HO4  "Carbohydrate core"  
23  OPM  HO6  MAN  HO6  "Carbohydrate core"  
#   #
loop_
_pdbx_chem_comp_feature.comp_id
_pdbx_chem_comp_feature.type
_pdbx_chem_comp_feature.value
_pdbx_chem_comp_feature.source
_pdbx_chem_comp_feature.support
OPM  "CARBOHYDRATE ISOMER"                  D         PDB  ?  
OPM  "CARBOHYDRATE RING"                    pyranose  PDB  ?  
OPM  "CARBOHYDRATE ANOMER"                  alpha     PDB  ?  
OPM  "CARBOHYDRATE PRIMARY CARBONYL GROUP"  aldose    PDB  ?  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
OPM  "Create component"          2002-07-10  RCSB  
OPM  "Modify descriptor"         2011-06-04  RCSB  
OPM  "Other modification"        2020-07-03  RCSB  
OPM  "Modify parent residue"     2020-07-17  RCSB  
OPM  "Modify name"               2020-07-17  RCSB  
OPM  "Modify synonyms"           2020-07-17  RCSB  
OPM  "Modify linking type"       2020-07-17  RCSB  
OPM  "Modify leaving atom flag"  2020-07-17  RCSB  
##
