data_Q3M
#

_chem_comp.id                                   Q3M
_chem_comp.name                                 "Methyl 2-(acetylamino)-2-deoxy-1-thio-alpha-D-galactopyranose"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C10 H19 N O4 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "N-[(1R,2R,3S,4R,6S)-2,3-dihydroxy-4-(hydroxymethyl)-6-(methylsulfanyl)cyclohexyl]acetamide"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2019-09-16
_chem_comp.pdbx_modified_date                   2021-03-26
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       249.327
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    Q3M
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       6U70
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
Q3M  C01  C1   C  0  1  N  N  N  -14.051  -12.779  5.714   1.006  -3.743  -0.026  C01  Q3M   1  
Q3M  S02  S1   S  0  1  N  N  N  -13.686  -11.118  4.998  -0.417  -2.645   0.219  S02  Q3M   2  
Q3M  C03  C2   C  0  1  N  N  S  -15.216  -10.079  4.995   0.345  -1.002   0.308  C03  Q3M   3  
Q3M  C04  C3   C  0  1  N  N  N  -15.930  -10.185  6.324   0.986  -0.663  -1.039  C04  Q3M   4  
Q3M  C05  C4   C  0  1  N  N  R  -15.063   -9.572  7.423   1.630   0.723  -0.964  C05  Q3M   5  
Q3M  C06  C5   C  0  1  N  N  N  -15.799   -9.738  8.771   2.703   0.729   0.127  C06  Q3M   6  
Q3M  O07  O1   O  0  1  N  N  N  -15.873  -11.126  9.000   3.782  -0.123  -0.262  O07  Q3M   7  
Q3M  C08  C6   C  0  1  N  N  S  -14.738   -8.093  7.199   0.559   1.765  -0.632  C08  Q3M   8  
Q3M  O09  O2   O  0  1  N  N  N  -15.902   -7.312  7.296   1.160   3.059  -0.561  O09  Q3M   9  
Q3M  C10  C7   C  0  1  N  N  R  -14.083   -7.872  5.824  -0.082   1.426   0.716  C10  Q3M  10  
Q3M  O11  O3   O  0  1  N  N  N  -13.986   -6.483  5.594   0.920   1.431   1.735  O11  Q3M  11  
Q3M  C12  C8   C  0  1  N  N  R  -14.874   -8.579  4.711  -0.725   0.040   0.640  C12  Q3M  12  
Q3M  N13  N1   N  0  1  N  N  N  -14.097   -8.572  3.492  -1.752   0.034  -0.404  N13  Q3M  13  
Q3M  C14  C9   C  0  1  N  N  N  -14.737   -8.416  2.208  -3.001   0.457  -0.124  C14  Q3M  14  
Q3M  C15  C10  C  0  1  N  N  N  -13.828   -8.412  0.985  -4.057   0.451  -1.198  C15  Q3M  15  
Q3M  O16  O4   O  0  1  N  N  N  -15.922   -8.259  2.119  -3.274   0.841   0.994  O16  Q3M  16  
Q3M  H1   H1   H  0  1  N  N  N  -13.136  -13.389  5.712   0.661  -4.775  -0.095  H1   Q3M  17  
Q3M  H2   H2   H  0  1  N  N  N  -14.411  -12.662  6.747   1.522  -3.470  -0.946  H2   Q3M  18  
Q3M  H3   H3   H  0  1  N  N  N  -14.825  -13.276  5.111   1.690  -3.644   0.817  H3   Q3M  19  
Q3M  H4   H4   H  0  1  N  N  N  -15.855  -10.469  4.189   1.110  -0.998   1.085  H4   Q3M  20  
Q3M  H5   H5   H  0  1  N  N  N  -16.887   -9.646  6.269   1.749  -1.405  -1.276  H5   Q3M  21  
Q3M  H6   H6   H  0  1  N  N  N  -16.119  -11.244  6.555   0.222  -0.667  -1.816  H6   Q3M  22  
Q3M  H7   H7   H  0  1  N  N  N  -14.118  -10.132  7.475   2.086   0.965  -1.923  H7   Q3M  23  
Q3M  H8   H8   H  0  1  N  N  N  -15.236   -9.246  9.578   3.073   1.744   0.267  H8   Q3M  24  
Q3M  H9   H9   H  0  1  N  N  N  -16.809   -9.305  8.712   2.273   0.367   1.061  H9   Q3M  25  
Q3M  H10  H10  H  0  1  N  N  N  -16.320  -11.288  9.823   4.500  -0.168   0.384  H10  Q3M  26  
Q3M  H11  H11  H  0  1  N  N  N  -14.018   -7.782  7.970  -0.205   1.761  -1.409  H11  Q3M  27  
Q3M  H12  H12  H  0  1  N  N  N  -16.306   -7.449  8.145   0.539   3.771  -0.354  H12  Q3M  28  
Q3M  H13  H13  H  0  1  N  N  N  -13.075   -8.312  5.855  -0.844   2.168   0.952  H13  Q3M  29  
Q3M  H14  H14  H  0  1  N  N  N  -13.493   -6.079  6.298   1.371   2.280   1.839  H14  Q3M  30  
Q3M  H15  H15  H  0  1  N  N  N  -15.817   -8.036  4.554  -1.181  -0.202   1.600  H15  Q3M  31  
Q3M  H16  H16  H  0  1  N  N  N  -13.104   -8.677  3.539  -1.533  -0.273  -1.298  H16  Q3M  32  
Q3M  H17  H17  H  0  1  N  N  N  -14.431   -8.249  0.080  -4.576  -0.507  -1.192  H17  Q3M  33  
Q3M  H18  H18  H  0  1  N  N  N  -13.087   -7.605  1.082  -4.772   1.252  -1.009  H18  Q3M  34  
Q3M  H19  H19  H  0  1  N  N  N  -13.309   -9.379  0.911  -3.588   0.605  -2.170  H19  Q3M  35  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
Q3M  C15  C14  SING  N  N   1  
Q3M  O16  C14  DOUB  N  N   2  
Q3M  C14  N13  SING  N  N   3  
Q3M  N13  C12  SING  N  N   4  
Q3M  C12  C03  SING  N  N   5  
Q3M  C12  C10  SING  N  N   6  
Q3M  C03  S02  SING  N  N   7  
Q3M  C03  C04  SING  N  N   8  
Q3M  S02  C01  SING  N  N   9  
Q3M  O11  C10  SING  N  N  10  
Q3M  C10  C08  SING  N  N  11  
Q3M  C04  C05  SING  N  N  12  
Q3M  C08  O09  SING  N  N  13  
Q3M  C08  C05  SING  N  N  14  
Q3M  C05  C06  SING  N  N  15  
Q3M  C06  O07  SING  N  N  16  
Q3M  C01  H1   SING  N  N  17  
Q3M  C01  H2   SING  N  N  18  
Q3M  C01  H3   SING  N  N  19  
Q3M  C03  H4   SING  N  N  20  
Q3M  C04  H5   SING  N  N  21  
Q3M  C04  H6   SING  N  N  22  
Q3M  C05  H7   SING  N  N  23  
Q3M  C06  H8   SING  N  N  24  
Q3M  C06  H9   SING  N  N  25  
Q3M  O07  H10  SING  N  N  26  
Q3M  C08  H11  SING  N  N  27  
Q3M  O09  H12  SING  N  N  28  
Q3M  C10  H13  SING  N  N  29  
Q3M  O11  H14  SING  N  N  30  
Q3M  C12  H15  SING  N  N  31  
Q3M  N13  H16  SING  N  N  32  
Q3M  C15  H17  SING  N  N  33  
Q3M  C15  H18  SING  N  N  34  
Q3M  C15  H19  SING  N  N  35  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
Q3M  SMILES            ACDLabs               12.01  "CSC1CC(CO)C(O)C(O)C1NC(C)=O"  
Q3M  InChI             InChI                 1.03   "InChI=1S/C10H19NO4S/c1-5(13)11-8-7(16-2)3-6(4-12)9(14)10(8)15/h6-10,12,14-15H,3-4H2,1-2H3,(H,11,13)/t6-,7+,8+,9+,10-/m1/s1"  
Q3M  InChIKey          InChI                 1.03   ZYKRTEHWXBHGOU-SQQIUAQRSA-N  
Q3M  SMILES_CANONICAL  CACTVS                3.385  "CS[C@H]1C[C@H](CO)[C@H](O)[C@H](O)[C@H]1NC(C)=O"  
Q3M  SMILES            CACTVS                3.385  "CS[CH]1C[CH](CO)[CH](O)[CH](O)[CH]1NC(C)=O"  
Q3M  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "CC(=O)N[C@H]1[C@H](C[C@@H]([C@@H]([C@@H]1O)O)CO)SC"  
Q3M  SMILES            "OpenEye OEToolkits"  2.0.7  "CC(=O)NC1C(CC(C(C1O)O)CO)SC"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
Q3M  "SYSTEMATIC NAME"  ACDLabs               12.01  "N-[(1R,2R,3S,4R,6S)-2,3-dihydroxy-4-(hydroxymethyl)-6-(methylsulfanyl)cyclohexyl]acetamide"  
Q3M  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "~{N}-[(1~{R},2~{R},3~{S},4~{R},6~{S})-4-(hydroxymethyl)-6-methylsulfanyl-2,3-bis(oxidanyl)cyclohexyl]ethanamide"  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     Q3M
_pdbx_chem_comp_synonyms.name        "N-[(1R,2R,3S,4R,6S)-2,3-dihydroxy-4-(hydroxymethyl)-6-(methylsulfanyl)cyclohexyl]acetamide"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
Q3M  "Create component"     2019-09-16  RCSB  
Q3M  "Modify synonyms"      2019-09-25  RCSB  
Q3M  "Modify synonyms"      2020-06-05  PDBE  
Q3M  "Modify linking type"  2020-07-23  RCSB  
Q3M  "Initial release"      2021-03-31  RCSB  
##
