data_XIM
#

_chem_comp.id                                   XIM
_chem_comp.name                                 "5,6,7,8-TETRAHYDRO-IMIDAZO[1,2-A]PYRIDINE-6,7,8-TRIOL"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C7 H10 N2 O3"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "XYLOSE-DERIVED IMIDAZOLE"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2000-08-17
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       170.166
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    XIM
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       1FHD
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
XIM  C1   C1   C  0  1  Y  N  N  -64.977  19.679  53.893   1.030  -0.422   0.168  C1   XIM   1  
XIM  C2   C2   C  0  1  N  N  S  -65.795  19.730  55.236  -0.227  -1.247   0.321  C2   XIM   2  
XIM  C3   C3   C  0  1  N  N  S  -64.827  19.536  56.428  -1.401  -0.441  -0.248  C3   XIM   3  
XIM  C4   C4   C  0  1  N  N  R  -63.719  18.524  56.095  -1.365   0.978   0.327  C4   XIM   4  
XIM  C5   C5   C  0  1  N  N  N  -62.779  19.051  54.993  -0.163   1.734  -0.251  C5   XIM   5  
XIM  N1   N1   N  0  1  Y  N  N  -63.624  19.365  53.880   1.036   0.907  -0.089  N1   XIM   6  
XIM  C17  C17  C  0  1  Y  N  N  -63.329  19.426  52.539   2.339   1.303  -0.161  C17  XIM   7  
XIM  C18  C18  C  0  1  Y  N  N  -64.429  19.752  51.826   3.089   0.203   0.054  C18  XIM   8  
XIM  N21  N21  N  0  1  Y  N  N  -65.462  19.912  52.661   2.261  -0.836   0.247  N21  XIM   9  
XIM  O2   O2   O  0  1  N  N  N  -66.553  20.904  55.446  -0.089  -2.473  -0.400  O2   XIM  10  
XIM  O3   O3   O  0  1  N  N  N  -65.556  19.087  57.552  -2.632  -1.071   0.114  O3   XIM  11  
XIM  O4   O4   O  0  1  N  N  N  -62.937  18.288  57.248  -2.569   1.664  -0.020  O4   XIM  12  
XIM  H2   H2   H  0  1  N  N  N  -66.475  18.866  55.227  -0.402  -1.457   1.376  H2   XIM  13  
XIM  H3   H3   H  0  1  N  N  N  -64.355  20.505  56.648  -1.320  -0.396  -1.334  H3   XIM  14  
XIM  H4   H4   H  0  1  N  N  N  -64.184  17.590  55.746  -1.275   0.929   1.412  H4   XIM  15  
XIM  H51  H51  H  0  1  N  N  N  -62.250  19.951  55.339  -0.330   1.931  -1.309  H51  XIM  16  
XIM  H52  H52  H  0  1  N  N  N  -62.046  18.280  54.713  -0.032   2.675   0.282  H52  XIM  17  
XIM  H17  H17  H  0  1  N  N  N  -62.354  19.239  52.114   2.699   2.302  -0.354  H17  XIM  18  
XIM  H18  H18  H  0  1  N  N  N  -64.468  19.865  50.753   4.168   0.164   0.066  H18  XIM  19  
XIM  HO2  HO2  H  0  1  N  N  N  -67.009  20.843  56.277   0.648  -3.023  -0.103  HO2  XIM  20  
XIM  HO3  HO3  H  0  1  N  N  N  -64.965  18.967  58.286  -2.722  -1.976  -0.214  HO3  XIM  21  
XIM  HO4  HO4  H  0  1  N  N  N  -62.252  17.663  57.044  -2.615   2.571   0.312  HO4  XIM  22  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
XIM  C1   C2   SING  N  N   1  
XIM  C1   N1   SING  Y  N   2  
XIM  C1   N21  DOUB  Y  N   3  
XIM  C2   C3   SING  N  N   4  
XIM  C2   O2   SING  N  N   5  
XIM  C2   H2   SING  N  N   6  
XIM  C3   C4   SING  N  N   7  
XIM  C3   O3   SING  N  N   8  
XIM  C3   H3   SING  N  N   9  
XIM  C4   C5   SING  N  N  10  
XIM  C4   O4   SING  N  N  11  
XIM  C4   H4   SING  N  N  12  
XIM  C5   N1   SING  N  N  13  
XIM  C5   H51  SING  N  N  14  
XIM  C5   H52  SING  N  N  15  
XIM  N1   C17  SING  Y  N  16  
XIM  C17  C18  DOUB  Y  N  17  
XIM  C17  H17  SING  N  N  18  
XIM  C18  N21  SING  Y  N  19  
XIM  C18  H18  SING  N  N  20  
XIM  O2   HO2  SING  N  N  21  
XIM  O3   HO3  SING  N  N  22  
XIM  O4   HO4  SING  N  N  23  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
XIM  SMILES            ACDLabs               12.01  "n1ccn2c1C(O)C(O)C(O)C2"  
XIM  InChI             InChI                 1.03   "InChI=1S/C7H10N2O3/c10-4-3-9-2-1-8-7(9)6(12)5(4)11/h1-2,4-6,10-12H,3H2/t4-,5+,6-/m1/s1"  
XIM  InChIKey          InChI                 1.03   QMHSBFMMOLGPGR-NGJCXOISSA-N  
XIM  SMILES_CANONICAL  CACTVS                3.370  "O[C@@H]1Cn2ccnc2[C@H](O)[C@H]1O"  
XIM  SMILES            CACTVS                3.370  "O[CH]1Cn2ccnc2[CH](O)[CH]1O"  
XIM  SMILES_CANONICAL  "OpenEye OEToolkits"  1.7.6  "c1cn2c(n1)[C@@H]([C@H]([C@@H](C2)O)O)O"  
XIM  SMILES            "OpenEye OEToolkits"  1.7.6  "c1cn2c(n1)C(C(C(C2)O)O)O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
XIM  "SYSTEMATIC NAME"  ACDLabs               12.01  "(6R,7S,8S)-5,6,7,8-tetrahydroimidazo[1,2-a]pyridine-6,7,8-triol"  
XIM  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.7.6  "(6R,7S,8S)-5,6,7,8-tetrahydroimidazo[1,2-a]pyridine-6,7,8-triol"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
XIM  "Create component"     2000-08-17  RCSB  
XIM  "Modify descriptor"    2011-06-04  RCSB  
XIM  "Modify linking type"  2012-12-21  RCSB  
XIM  "Modify synonyms"      2020-06-05  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     XIM
_pdbx_chem_comp_synonyms.name        "XYLOSE-DERIVED IMIDAZOLE"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
