data_XKM
# 
_chem_comp.id                                    XKM 
_chem_comp.name                                  "3-(4-{[(4P)-5-{[(1R)-cyclohex-2-en-1-yl]sulfanyl}-4-(pyridin-3-yl)-4H-1,2,4-triazol-3-yl]methoxy}-2,6-difluorophenyl)prop-2-yn-1-yl (1-methylpiperidin-4-yl)carbamate" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C30 H32 F2 N6 O3 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-11-03 
_chem_comp.pdbx_modified_date                    2024-09-23 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        594.675 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     XKM 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8UV2 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
XKM C12 C1  C 0 1 N N N N N N 185.659 234.540 199.720 -5.976  1.658  1.031  C12 XKM 1  
XKM C13 C2  C 0 1 N N N N N N 184.285 233.848 199.428 -4.543  1.333  0.952  C13 XKM 2  
XKM C14 C3  C 0 1 N N N N N N 183.204 233.360 199.153 -3.399  1.074  0.889  C14 XKM 3  
XKM C15 C4  C 0 1 Y N N N N N 181.917 232.810 198.800 -2.005  0.758  0.812  C15 XKM 4  
XKM C16 C5  C 0 1 Y N N N N N 180.959 233.436 198.069 -1.572  -0.321 0.036  C16 XKM 5  
XKM C18 C6  C 0 1 Y N N N N N 179.754 232.919 197.746 -0.226  -0.621 -0.036 C18 XKM 6  
XKM C19 C7  C 0 1 Y N N N N N 179.399 231.702 198.132 0.697   0.147  0.661  C19 XKM 7  
XKM C21 C8  C 0 1 N N N N N N 177.989 230.343 196.685 2.915   0.678  1.330  C21 XKM 8  
XKM C22 C9  C 0 1 Y N N N N N 176.772 229.426 196.717 4.329   0.198  1.129  C22 XKM 9  
XKM C01 C10 C 0 1 N N N N N N 190.307 234.484 203.212 -10.836 -0.402 -1.867 C01 XKM 10 
XKM C02 C11 C 0 1 N N N N N N 190.007 234.801 204.708 -10.545 -1.904 -1.886 C02 XKM 11 
XKM C04 C12 C 0 1 N N N N N N 189.149 234.118 206.704 -11.031 -4.001 -0.778 C04 XKM 12 
XKM C05 C13 C 0 1 N N N N N N 189.311 232.470 205.092 -10.621 -2.008 0.534  C05 XKM 13 
XKM C06 C14 C 0 1 N N N N N N 189.617 232.112 203.627 -10.914 -0.509 0.625  C06 XKM 14 
XKM C07 C15 C 0 1 N N N N N N 189.582 233.279 202.645 -10.282 0.204  -0.574 C07 XKM 15 
XKM C09 C16 C 0 1 N N N N N N 187.742 234.266 201.014 -8.068  0.873  0.192  C09 XKM 16 
XKM C25 C17 C 0 1 Y N N N N N 175.284 227.831 197.376 6.351   -0.091 0.362  C25 XKM 17 
XKM C27 C18 C 0 1 N N R N N N 172.793 226.432 197.557 8.862   -1.177 0.300  C27 XKM 18 
XKM C28 C19 C 0 1 N N N N N N 172.559 224.983 197.929 10.274  -1.164 -0.288 C28 XKM 19 
XKM C29 C20 C 0 1 N N N N N N 171.205 224.557 197.443 11.053  -2.351 0.293  C29 XKM 20 
XKM C30 C21 C 0 1 N N N N N N 170.653 225.095 196.163 10.436  -3.644 -0.242 C30 XKM 21 
XKM C31 C22 C 0 1 N N N N N N 171.142 226.511 196.117 8.947   -3.620 -0.060 C31 XKM 22 
XKM C32 C23 C 0 1 N N N N N N 172.596 226.474 196.072 8.262   -2.547 0.172  C32 XKM 23 
XKM C34 C24 C 0 1 Y N N N N N 176.917 228.183 198.879 4.946   1.548  -0.862 C34 XKM 24 
XKM C35 C25 C 0 1 Y N N N N N 178.287 227.734 198.953 4.715   2.879  -0.543 C35 XKM 25 
XKM C37 C26 C 0 1 Y N N N N N 177.868 227.425 201.285 4.470   3.434  -2.765 C37 XKM 26 
XKM C38 C27 C 0 1 Y N N N N N 176.559 227.826 201.288 4.692   2.128  -3.161 C38 XKM 27 
XKM C39 C28 C 0 1 Y N N N N N 176.018 228.261 199.896 4.936   1.162  -2.199 C39 XKM 28 
XKM C40 C29 C 0 1 Y N N N N N 180.284 230.910 198.887 0.272   1.220  1.433  C40 XKM 29 
XKM C41 C30 C 0 1 Y N N N N N 181.487 231.503 199.180 -1.071  1.532  1.507  C41 XKM 30 
XKM F17 F1  F 0 1 N N N N N N 181.135 234.642 197.610 -2.469  -1.069 -0.643 F17 XKM 31 
XKM F42 F2  F 0 1 N N N N N N 182.326 230.794 199.886 -1.483  2.579  2.255  F42 XKM 32 
XKM N03 N1  N 0 1 N N N N N N 190.006 233.637 205.650 -11.171 -2.540 -0.720 N03 XKM 33 
XKM N08 N2  N 0 1 N N N N N N 188.127 233.601 202.302 -8.828  0.031  -0.536 N08 XKM 34 
XKM N23 N3  N 0 1 Y N N N N N 175.757 229.181 195.802 4.954   -0.688 1.852  N23 XKM 35 
XKM N24 N4  N 0 1 Y N N N N N 174.891 228.272 196.181 6.147   -0.863 1.405  N24 XKM 36 
XKM N33 N5  N 0 1 Y N N N N N 176.407 228.535 197.684 5.194   0.607  0.148  N33 XKM 37 
XKM N36 N6  N 0 1 Y N N N N N 178.663 227.397 200.139 4.487   3.767  -1.490 N36 XKM 38 
XKM O10 O1  O 0 1 N N N N N N 188.253 235.319 200.673 -8.589  1.776  0.816  O10 XKM 39 
XKM O11 O2  O 0 1 N N N N N N 186.747 233.694 200.176 -6.732  0.714  0.227  O11 XKM 40 
XKM O20 O3  O 0 1 N N N N N N 178.156 231.412 197.681 2.020   -0.152 0.588  O20 XKM 41 
XKM S26 S1  S 0 1 N N N N N N 174.407 226.666 198.159 7.831   0.016  -0.588 S26 XKM 42 
XKM H1  H1  H 0 1 N N N N N N 185.987 235.028 198.790 -6.306  1.596  2.069  H1  XKM 43 
XKM H2  H2  H 0 1 N N N N N N 185.487 235.303 200.494 -6.141  2.668  0.657  H2  XKM 44 
XKM H3  H3  H 0 1 N N N N N N 179.065 233.510 197.161 0.109   -1.454 -0.635 H3  XKM 45 
XKM H4  H4  H 0 1 N N N N N N 178.873 229.694 196.771 2.662   0.630  2.389  H4  XKM 46 
XKM H5  H5  H 0 1 N N N N N N 177.988 230.831 195.699 2.828   1.708  0.982  H5  XKM 47 
XKM H6  H6  H 0 1 N N N N N N 191.388 234.307 203.113 -10.358 0.072  -2.724 H6  XKM 48 
XKM H7  H7  H 0 1 N N N N N N 190.023 235.363 202.615 -11.913 -0.239 -1.914 H7  XKM 49 
XKM H8  H8  H 0 1 N N N N N N 190.768 235.514 205.058 -10.951 -2.341 -2.799 H8  XKM 50 
XKM H9  H9  H 0 1 N N N N N N 189.014 235.272 204.757 -9.468  -2.066 -1.854 H9  XKM 51 
XKM H10 H10 H 0 1 N N N N N N 189.056 233.347 207.483 -9.974  -4.264 -0.794 H10 XKM 52 
XKM H11 H11 H 0 1 N N N N N N 189.582 235.030 207.141 -11.503 -4.447 0.098  H11 XKM 53 
XKM H12 H12 H 0 1 N N N N N N 188.154 234.345 206.293 -11.513 -4.377 -1.681 H12 XKM 54 
XKM H13 H13 H 0 1 N N N N N N 188.230 232.659 205.169 -9.544  -2.170 0.555  H13 XKM 55 
XKM H14 H14 H 0 1 N N N N N N 189.576 231.599 205.709 -11.082 -2.520 1.379  H14 XKM 56 
XKM H15 H15 H 0 1 N N N N N N 188.875 231.369 203.298 -11.992 -0.347 0.618  H15 XKM 57 
XKM H16 H16 H 0 1 N N N N N N 190.623 231.668 203.590 -10.493 -0.112 1.549  H16 XKM 58 
XKM H17 H17 H 0 1 N N N N N N 190.093 232.969 201.722 -10.525 1.265  -0.536 H17 XKM 59 
XKM H18 H18 H 0 1 N N N N N N 172.109 227.110 198.088 8.907   -0.902 1.354  H18 XKM 60 
XKM H19 H19 H 0 1 N N N N N N 172.608 224.872 199.022 10.221  -1.257 -1.373 H19 XKM 61 
XKM H20 H20 H 0 1 N N N N N N 173.331 224.355 197.461 10.772  -0.230 -0.025 H20 XKM 62 
XKM H21 H21 H 0 1 N N N N N N 170.488 224.826 198.233 12.098  -2.289 -0.013 H21 XKM 63 
XKM H22 H22 H 0 1 N N N N N N 171.239 223.463 197.336 10.989  -2.333 1.381  H22 XKM 64 
XKM H23 H23 H 0 1 N N N N N N 169.553 225.062 196.168 10.669  -3.743 -1.303 H23 XKM 65 
XKM H24 H24 H 0 1 N N N N N N 171.033 224.523 195.304 10.851  -4.494 0.300  H24 XKM 66 
XKM H25 H25 H 0 1 N N N N N N 170.526 227.398 196.117 8.413   -4.557 -0.126 H25 XKM 67 
XKM H27 H27 H 0 1 N N N N N N 173.295 226.476 195.249 7.191   -2.642 0.280  H27 XKM 68 
XKM H29 H29 H 0 1 N N N N N N 178.938 227.685 198.093 4.721   3.189  0.492  H29 XKM 69 
XKM H30 H30 H 0 1 N N N N N N 178.309 227.114 202.220 4.279   4.192  -3.511 H30 XKM 70 
XKM H31 H31 H 0 1 N N N N N N 175.953 227.839 202.182 4.676   1.865  -4.209 H31 XKM 71 
XKM H32 H32 H 0 1 N N N N N N 175.003 228.600 199.748 5.113   0.134  -2.480 H32 XKM 72 
XKM H33 H33 H 0 1 N N N N N N 180.035 229.910 199.212 0.994   1.814  1.974  H33 XKM 73 
XKM H35 H35 H 0 1 N N N N N N 187.410 233.361 202.957 -8.412  -0.690 -1.034 H35 XKM 74 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
XKM N23 N24 SING Y N 1  
XKM N23 C22 DOUB Y N 2  
XKM C32 C31 DOUB N N 3  
XKM C32 C27 SING N N 4  
XKM C31 C30 SING N N 5  
XKM C30 C29 SING N N 6  
XKM N24 C25 DOUB Y N 7  
XKM C21 C22 SING N N 8  
XKM C21 O20 SING N N 9  
XKM C22 N33 SING Y N 10 
XKM C25 N33 SING Y N 11 
XKM C25 S26 SING N N 12 
XKM C29 C28 SING N N 13 
XKM C27 C28 SING N N 14 
XKM C27 S26 SING N N 15 
XKM F17 C16 SING N N 16 
XKM O20 C19 SING N N 17 
XKM N33 C34 SING N N 18 
XKM C18 C16 DOUB Y N 19 
XKM C18 C19 SING Y N 20 
XKM C16 C15 SING Y N 21 
XKM C19 C40 DOUB Y N 22 
XKM C15 C14 SING N N 23 
XKM C15 C41 DOUB Y N 24 
XKM C34 C35 DOUB Y N 25 
XKM C34 C39 SING Y N 26 
XKM C40 C41 SING Y N 27 
XKM C35 N36 SING Y N 28 
XKM C14 C13 TRIP N N 29 
XKM C41 F42 SING N N 30 
XKM C13 C12 SING N N 31 
XKM C12 O11 SING N N 32 
XKM C39 C38 DOUB Y N 33 
XKM N36 C37 DOUB Y N 34 
XKM O11 C09 SING N N 35 
XKM O10 C09 DOUB N N 36 
XKM C09 N08 SING N N 37 
XKM C37 C38 SING Y N 38 
XKM N08 C07 SING N N 39 
XKM C07 C01 SING N N 40 
XKM C07 C06 SING N N 41 
XKM C01 C02 SING N N 42 
XKM C06 C05 SING N N 43 
XKM C02 N03 SING N N 44 
XKM C05 N03 SING N N 45 
XKM N03 C04 SING N N 46 
XKM C12 H1  SING N N 47 
XKM C12 H2  SING N N 48 
XKM C18 H3  SING N N 49 
XKM C21 H4  SING N N 50 
XKM C21 H5  SING N N 51 
XKM C01 H6  SING N N 52 
XKM C01 H7  SING N N 53 
XKM C02 H8  SING N N 54 
XKM C02 H9  SING N N 55 
XKM C04 H10 SING N N 56 
XKM C04 H11 SING N N 57 
XKM C04 H12 SING N N 58 
XKM C05 H13 SING N N 59 
XKM C05 H14 SING N N 60 
XKM C06 H15 SING N N 61 
XKM C06 H16 SING N N 62 
XKM C07 H17 SING N N 63 
XKM C27 H18 SING N N 64 
XKM C28 H19 SING N N 65 
XKM C28 H20 SING N N 66 
XKM C29 H21 SING N N 67 
XKM C29 H22 SING N N 68 
XKM C30 H23 SING N N 69 
XKM C30 H24 SING N N 70 
XKM C31 H25 SING N N 71 
XKM C32 H27 SING N N 72 
XKM C35 H29 SING N N 73 
XKM C37 H30 SING N N 74 
XKM C38 H31 SING N N 75 
XKM C39 H32 SING N N 76 
XKM C40 H33 SING N N 77 
XKM N08 H35 SING N N 78 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
XKM SMILES           ACDLabs              14.52 "CN1CCC(NC(=O)OCC#Cc2c(F)cc(OCc3nnc(SC4C=CCCC4)n3c3cccnc3)cc2F)CC1"                                                                                                                                                                    
XKM InChI            InChI                1.06  "InChI=1S/C30H32F2N6O3S/c1-37-14-11-21(12-15-37)34-30(39)40-16-6-10-25-26(31)17-23(18-27(25)32)41-20-28-35-36-29(42-24-8-3-2-4-9-24)38(28)22-7-5-13-33-19-22/h3,5,7-8,13,17-19,21,24H,2,4,9,11-12,14-16,20H2,1H3,(H,34,39)/t24-/m0/s1" 
XKM InChIKey         InChI                1.06  JLJRMQXDMKAJCA-DEOSSOPVSA-N                                                                                                                                                                                                            
XKM SMILES_CANONICAL CACTVS               3.385 "CN1CCC(CC1)NC(=O)OCC#Cc2c(F)cc(OCc3nnc(S[C@@H]4CCCC=C4)n3c5cccnc5)cc2F"                                                                                                                                                               
XKM SMILES           CACTVS               3.385 "CN1CCC(CC1)NC(=O)OCC#Cc2c(F)cc(OCc3nnc(S[CH]4CCCC=C4)n3c5cccnc5)cc2F"                                                                                                                                                                 
XKM SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN1CCC(CC1)NC(=O)OCC#Cc2c(cc(cc2F)OCc3nnc(n3c4cccnc4)SC5CCCC=C5)F"                                                                                                                                                                    
XKM SMILES           "OpenEye OEToolkits" 2.0.7 "CN1CCC(CC1)NC(=O)OCC#Cc2c(cc(cc2F)OCc3nnc(n3c4cccnc4)SC5CCCC=C5)F"                                                                                                                                                                    
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
XKM "SYSTEMATIC NAME" ACDLabs              14.52 "3-(4-{[(4P)-5-{[(1R)-cyclohex-2-en-1-yl]sulfanyl}-4-(pyridin-3-yl)-4H-1,2,4-triazol-3-yl]methoxy}-2,6-difluorophenyl)prop-2-yn-1-yl (1-methylpiperidin-4-yl)carbamate" 
XKM "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "3-[4-[(5-cyclohex-2-en-1-ylsulfanyl-4-pyridin-3-yl-1,2,4-triazol-3-yl)methoxy]-2,6-bis(fluoranyl)phenyl]prop-2-ynyl ~{N}-(1-methylpiperidin-4-yl)carbamate"            
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
XKM "Create component"   2023-11-03 RCSB 
XKM "Initial release"    2024-08-21 RCSB 
XKM "Modify coordinates" 2024-09-21 RCSB 
# 
