data_Y3M
# 
_chem_comp.id                                    Y3M 
_chem_comp.name                                  "ethyl (9S)-9-[5-(1H-benzimidazol-2-ylsulfanyl)furan-2-yl]-8-hydroxy-5,6,7,9-tetrahydro-2H-pyrrolo[3,4-b]quinoline-3-carboxylate" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C25 H22 N4 O4 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2014-09-02 
_chem_comp.pdbx_modified_date                    2014-11-14 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        474.532 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     Y3M 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        4UYN 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
Y3M O17  O17  O 0 1 N N N 25.411 -9.661 10.671 4.071  -0.233 0.992  O17  Y3M 1  
Y3M C16  C16  C 0 1 N N N 25.958 -8.584 10.856 3.971  -0.310 -0.219 C16  Y3M 2  
Y3M O18  O18  O 0 1 N N N 26.417 -7.830 9.700  4.957  0.164  -1.010 O18  Y3M 3  
Y3M C19  C19  C 0 1 N N N 26.207 -8.337 8.384  6.089  0.743  -0.358 C19  Y3M 4  
Y3M C20  C20  C 0 1 N N N 24.928 -7.755 7.817  7.094  1.221  -1.408 C20  Y3M 5  
Y3M C7   C7   C 0 1 Y N N 26.173 -8.029 12.229 2.825  -0.901 -0.797 C7   Y3M 6  
Y3M C3   C3   C 0 1 Y N N 26.862 -6.712 12.382 1.732  -1.437 -0.109 C3   Y3M 7  
Y3M N6   N6   N 0 1 Y N N 25.838 -8.532 13.448 2.572  -1.051 -2.148 N6   Y3M 8  
Y3M C5   C5   C 0 1 Y N N 26.250 -7.675 14.432 1.369  -1.663 -2.306 C5   Y3M 9  
Y3M C4   C4   C 0 1 Y N N 26.889 -6.560 13.825 0.837  -1.909 -1.098 C4   Y3M 10 
Y3M C2   C2   C 0 1 N N S 27.495 -5.425 14.497 -0.452 -2.549 -0.632 C2   Y3M 11 
Y3M C8   C8   C 0 1 N N N 28.063 -4.479 13.524 -0.651 -2.616 0.872  C8   Y3M 12 
Y3M C13  C13  C 0 1 N N N 28.741 -3.248 14.053 -1.769 -3.164 1.369  C13  Y3M 13 
Y3M O14  O14  O 0 1 N N N 28.794 -3.050 15.256 -2.700 -3.649 0.521  O14  Y3M 14 
Y3M C12  C12  C 0 1 N N N 29.330 -2.258 13.090 -2.006 -3.251 2.853  C12  Y3M 15 
Y3M C11  C11  C 0 1 N N N 29.756 -2.951 11.794 -1.295 -2.087 3.548  C11  Y3M 16 
Y3M C10  C10  C 0 1 N N N 28.579 -3.674 11.107 0.196  -2.142 3.203  C10  Y3M 17 
Y3M C9   C9   C 0 1 N N N 27.978 -4.706 12.046 0.361  -2.089 1.701  C9   Y3M 18 
Y3M N1   N1   N 0 1 N N N 27.388 -5.808 11.534 1.444  -1.554 1.207  N1   Y3M 19 
Y3M C15  C15  C 0 1 Y N N 26.444 -4.821 15.334 -1.602 -1.778 -1.225 C15  Y3M 20 
Y3M O24  O24  O 0 1 Y N N 26.071 -5.419 16.491 -1.858 -0.471 -1.028 O24  Y3M 21 
Y3M C23  C23  C 0 1 Y N N 25.066 -4.613 16.884 -2.961 -0.122 -1.711 C23  Y3M 22 
Y3M C22  C22  C 0 1 Y N N 24.814 -3.523 16.044 -3.424 -1.218 -2.358 C22  Y3M 23 
Y3M C21  C21  C 0 1 Y N N 25.734 -3.667 15.007 -2.543 -2.278 -2.047 C21  Y3M 24 
Y3M S25  S25  S 0 1 N N N 24.207 -5.009 18.347 -3.683 1.485  -1.757 S25  Y3M 25 
Y3M C26  C26  C 0 1 Y N N 25.049 -4.476 19.774 -2.562 2.353  -0.709 C26  Y3M 26 
Y3M N28  N28  N 0 1 Y N N 24.662 -4.749 21.021 -1.518 1.824  -0.121 N28  Y3M 27 
Y3M C29  C29  C 0 1 Y N N 25.566 -4.087 21.778 -0.877 2.772  0.610  C29  Y3M 28 
Y3M C34  C34  C 0 1 Y N N 25.693 -3.947 23.153 0.265  2.754  1.415  C34  Y3M 29 
Y3M C33  C33  C 0 1 Y N N 26.715 -3.153 23.669 0.677  3.908  2.043  C33  Y3M 30 
Y3M C32  C32  C 0 1 Y N N 27.621 -2.516 22.822 -0.033 5.089  1.883  C32  Y3M 31 
Y3M C31  C31  C 0 1 Y N N 27.518 -2.672 21.451 -1.162 5.123  1.091  C31  Y3M 32 
Y3M C30  C30  C 0 1 Y N N 26.481 -3.446 20.928 -1.591 3.971  0.451  C30  Y3M 33 
Y3M N27  N27  N 0 1 Y N N 26.136 -3.711 19.659 -2.650 3.679  -0.393 N27  Y3M 34 
Y3M H191 H191 H 0 0 N N N 27.055 -8.054 7.742  5.766  1.591  0.248  H191 Y3M 35 
Y3M H192 H192 H 0 0 N N N 26.126 -9.433 8.422  6.560  -0.002 0.283  H192 Y3M 36 
Y3M H201 H201 H 0 0 N N N 24.765 -8.146 6.802  7.957  1.663  -0.911 H201 Y3M 37 
Y3M H202 H202 H 0 0 N N N 24.081 -8.038 8.459  7.417  0.374  -2.013 H202 Y3M 38 
Y3M H203 H203 H 0 0 N N N 25.009 -6.659 7.779  6.623  1.966  -2.049 H203 Y3M 39 
Y3M H6   H6   H 0 1 N N N 25.362 -9.398 13.602 3.159  -0.765 -2.866 H6   Y3M 40 
Y3M H5   H5   H 0 1 N N N 26.113 -7.821 15.493 0.913  -1.910 -3.253 H5   Y3M 41 
Y3M H2   H2   H 0 1 N N N 28.302 -5.786 15.151 -0.490 -3.565 -1.026 H2   Y3M 42 
Y3M H14  H14  H 0 1 N N N 29.252 -2.235 15.423 -3.474 -4.026 0.962  H14  Y3M 43 
Y3M H121 H121 H 0 0 N N N 28.578 -1.489 12.858 -3.076 -3.197 3.054  H121 Y3M 44 
Y3M H122 H122 H 0 0 N N N 30.209 -1.784 13.552 -1.612 -4.195 3.230  H122 Y3M 45 
Y3M H111 H111 H 0 0 N N N 30.159 -2.195 11.104 -1.715 -1.143 3.201  H111 Y3M 46 
Y3M H112 H112 H 0 0 N N N 30.538 -3.689 12.027 -1.424 -2.171 4.627  H112 Y3M 47 
Y3M H101 H101 H 0 0 N N N 27.809 -2.937 10.835 0.706  -1.291 3.656  H101 Y3M 48 
Y3M H102 H102 H 0 0 N N N 28.942 -4.177 10.198 0.623  -3.069 3.584  H102 Y3M 49 
Y3M H21  H21  H 0 1 N N N 25.867 -3.029 14.146 -2.612 -3.296 -2.399 H21  Y3M 50 
Y3M H22  H22  H 0 1 N N N 24.074 -2.746 16.170 -4.296 -1.271 -2.993 H22  Y3M 51 
Y3M H27  H27  H 0 1 N N N 26.589 -3.406 18.821 -3.329 4.300  -0.701 H27  Y3M 52 
Y3M H34  H34  H 0 1 N N N 25.005 -4.449 23.817 0.822  1.838  1.545  H34  Y3M 53 
Y3M H33  H33  H 0 1 N N N 26.807 -3.029 24.738 1.560  3.894  2.666  H33  Y3M 54 
Y3M H32  H32  H 0 1 N N N 28.405 -1.900 23.237 0.301  5.987  2.382  H32  Y3M 55 
Y3M H31  H31  H 0 1 N N N 28.232 -2.200 20.793 -1.710 6.046  0.970  H31  Y3M 56 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
Y3M O17 C16  DOUB N N 1  
Y3M C16 O18  SING N N 2  
Y3M C16 C7   SING N N 3  
Y3M O18 C19  SING N N 4  
Y3M C19 C20  SING N N 5  
Y3M C7  C3   DOUB Y N 6  
Y3M C7  N6   SING Y N 7  
Y3M C3  C4   SING Y N 8  
Y3M C3  N1   SING N N 9  
Y3M N6  C5   SING Y N 10 
Y3M C5  C4   DOUB Y N 11 
Y3M C4  C2   SING N N 12 
Y3M C2  C8   SING N N 13 
Y3M C2  C15  SING N N 14 
Y3M C8  C13  DOUB N N 15 
Y3M C8  C9   SING N N 16 
Y3M C13 O14  SING N N 17 
Y3M C13 C12  SING N N 18 
Y3M C12 C11  SING N N 19 
Y3M C11 C10  SING N N 20 
Y3M C10 C9   SING N N 21 
Y3M C9  N1   DOUB N N 22 
Y3M C15 O24  SING Y N 23 
Y3M C15 C21  DOUB Y N 24 
Y3M O24 C23  SING Y N 25 
Y3M C23 C22  DOUB Y N 26 
Y3M C23 S25  SING N N 27 
Y3M C22 C21  SING Y N 28 
Y3M S25 C26  SING N N 29 
Y3M C26 N28  DOUB Y N 30 
Y3M C26 N27  SING Y N 31 
Y3M N28 C29  SING Y N 32 
Y3M C29 C34  SING Y N 33 
Y3M C29 C30  DOUB Y N 34 
Y3M C34 C33  DOUB Y N 35 
Y3M C33 C32  SING Y N 36 
Y3M C32 C31  DOUB Y N 37 
Y3M C31 C30  SING Y N 38 
Y3M C30 N27  SING Y N 39 
Y3M C19 H191 SING N N 40 
Y3M C19 H192 SING N N 41 
Y3M C20 H201 SING N N 42 
Y3M C20 H202 SING N N 43 
Y3M C20 H203 SING N N 44 
Y3M N6  H6   SING N N 45 
Y3M C5  H5   SING N N 46 
Y3M C2  H2   SING N N 47 
Y3M O14 H14  SING N N 48 
Y3M C12 H121 SING N N 49 
Y3M C12 H122 SING N N 50 
Y3M C11 H111 SING N N 51 
Y3M C11 H112 SING N N 52 
Y3M C10 H101 SING N N 53 
Y3M C10 H102 SING N N 54 
Y3M C21 H21  SING N N 55 
Y3M C22 H22  SING N N 56 
Y3M N27 H27  SING N N 57 
Y3M C34 H34  SING N N 58 
Y3M C33 H33  SING N N 59 
Y3M C32 H32  SING N N 60 
Y3M C31 H31  SING N N 61 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
Y3M SMILES           ACDLabs              12.01 "O=C(OCC)c6c5N=C1C(=C(O)CCC1)C(c4oc(Sc2nc3c(n2)cccc3)cc4)c5cn6"                                                                                                                                    
Y3M InChI            InChI                1.03  "InChI=1S/C25H22N4O4S/c1-2-32-24(31)23-22-13(12-26-23)20(21-16(27-22)8-5-9-17(21)30)18-10-11-19(33-18)34-25-28-14-6-3-4-7-15(14)29-25/h3-4,6-7,10-12,20,26,30H,2,5,8-9H2,1H3,(H,28,29)/t20-/m1/s1" 
Y3M InChIKey         InChI                1.03  POXQKNUAFHJFKI-HXUWFJFHSA-N                                                                                                                                                                        
Y3M SMILES_CANONICAL CACTVS               3.385 "CCOC(=O)c1[nH]cc2[C@H](c3oc(Sc4[nH]c5ccccc5n4)cc3)C6=C(O)CCCC6=Nc12"                                                                                                                              
Y3M SMILES           CACTVS               3.385 "CCOC(=O)c1[nH]cc2[CH](c3oc(Sc4[nH]c5ccccc5n4)cc3)C6=C(O)CCCC6=Nc12"                                                                                                                               
Y3M SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CCOC(=O)c1c2c(c[nH]1)[C@@H](C3=C(CCCC3=N2)O)c4ccc(o4)Sc5[nH]c6ccccc6n5"                                                                                                                           
Y3M SMILES           "OpenEye OEToolkits" 1.7.6 "CCOC(=O)c1c2c(c[nH]1)C(C3=C(CCCC3=N2)O)c4ccc(o4)Sc5[nH]c6ccccc6n5"                                                                                                                                
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
Y3M "SYSTEMATIC NAME" ACDLabs              12.01 "ethyl (9S)-9-[5-(1H-benzimidazol-2-ylsulfanyl)furan-2-yl]-8-hydroxy-5,6,7,9-tetrahydro-2H-pyrrolo[3,4-b]quinoline-3-carboxylate"  
Y3M "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "ethyl (9S)-9-[5-(1H-benzimidazol-2-ylsulfanyl)furan-2-yl]-8-oxidanyl-5,6,7,9-tetrahydro-2H-pyrrolo[3,4-b]quinoline-3-carboxylate" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
Y3M "Create component" 2014-09-02 EBI  
Y3M "Initial release"  2014-11-19 RCSB 
# 
