data_YTM
#

_chem_comp.id                                   YTM
_chem_comp.name                                 "5-{3-[3-chloro-5-(2-phenylethoxy)phenyl]-2-oxo-2H-[1,3'-bipyridin]-5-yl}pyrimidine-2,4(1H,3H)-dione"
_chem_comp.type                                 non-polymer
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C28 H21 Cl N4 O4"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        ?
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2021-03-31
_chem_comp.pdbx_modified_date                   2021-06-25
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       512.944
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    YTM
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       7M8Y
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
YTM  C1   C1   C   0  1  N  N  N  -13.804  -27.223   0.536  -1.535   1.503  -0.299  C1   YTM   1  
YTM  C2   C2   C   0  1  N  N  N  -14.549  -27.942  -0.386  -1.101   0.156  -0.252  C2   YTM   2  
YTM  C3   C3   C   0  1  Y  N  N  -15.894  -27.471  -0.917   0.314  -0.186  -0.526  C3   YTM   3  
YTM  C4   C4   C   0  1  Y  N  N  -16.959  -28.378  -1.011   0.646  -0.952  -1.643  C4   YTM   4  
YTM  C5   C5   C   0  1  Y  N  N  -18.187  -27.958  -1.507   1.966  -1.269  -1.895  C5   YTM   5  
YTM  C6   C6   C   0  1  Y  N  N  -18.333  -26.652  -1.894   2.962  -0.828  -1.042  C6   YTM   6  
YTM  O1   O1   O   0  1  N  N  N  -14.261  -26.011   1.021  -0.740   2.388  -0.572  O1   YTM   7  
YTM  O2   O2   O   0  1  N  N  N  -17.502  -24.445  -2.152   3.622   0.366   0.906  O2   YTM   8  
YTM  C7   C7   C   0  1  Y  N  N  -17.279  -25.762  -1.789   2.640  -0.065   0.072  C7   YTM   9  
YTM  C8   C8   C   0  1  N  N  N  -18.596  -23.991  -1.393   4.963  -0.003   0.577  C8   YTM  10  
YTM  C9   C9   C   0  1  N  N  N  -18.202  -22.741  -0.626   5.921   0.569   1.623  C9   YTM  11  
YTM  O3   O3   O   0  1  N  N  N  -11.454  -31.926   1.151  -4.246  -2.536  -1.466  O3   YTM  12  
YTM  O4   O4   O   0  1  N  N  N  -10.826  -34.275  -2.870  -7.024  -4.304   1.509  O4   YTM  13  
YTM  C10  C10  C   0  1  Y  N  N  -18.000  -21.690  -1.688   7.335   0.179   1.276  C10  YTM  14  
YTM  C11  C11  C   0  1  Y  N  N  -19.021  -20.781  -1.951   8.098   0.998   0.465  C11  YTM  15  
YTM  C12  C12  C   0  1  Y  N  N  -18.827  -19.832  -2.945   9.395   0.641   0.146  C12  YTM  16  
YTM  C13  C13  C   0  1  Y  N  N  -17.627  -19.815  -3.648   9.928  -0.536   0.637  C13  YTM  17  
YTM  C14  C14  C   0  1  Y  N  N  -16.618  -20.733  -3.382   9.165  -1.356   1.448  C14  YTM  18  
YTM  C15  C15  C   0  1  Y  N  N  -16.809  -21.685  -2.397   7.870  -0.995   1.772  C15  YTM  19  
YTM  C16  C16  C   0  1  Y  N  N  -16.059  -26.156  -1.282   1.319   0.262   0.329  C16  YTM  20  
YTM  C17  C17  C   0  1  N  N  N  -14.038  -29.137  -0.875  -2.016  -0.837   0.052  C17  YTM  21  
YTM  C18  C18  C   0  1  N  N  N  -12.813  -29.606  -0.410  -3.354  -0.478   0.307  C18  YTM  22  
YTM  C19  C19  C   0  1  N  N  N  -12.256  -30.916  -0.970  -4.356  -1.522   0.637  C19  YTM  23  
YTM  C20  C20  C   0  1  N  N  N  -11.636  -31.941  -0.240  -4.742  -2.535  -0.354  C20  YTM  24  
YTM  C21  C21  C   0  1  N  N  N  -12.344  -31.064  -2.349  -4.937  -1.568   1.868  C21  YTM  25  
YTM  C22  C22  C   0  1  N  N  N  -11.305  -33.129  -2.225  -6.201  -3.457   1.221  C22  YTM  26  
YTM  C23  C23  C   0  1  N  N  N  -12.116  -28.854   0.519  -3.728   0.844   0.250  C23  YTM  27  
YTM  C24  C24  C   0  1  Y  N  N  -11.906  -26.955   1.961  -3.232   3.148  -0.106  C24  YTM  28  
YTM  C25  C25  C   0  1  Y  N  N  -10.819  -26.146   1.703  -3.241   3.834  -1.317  C25  YTM  29  
YTM  C26  C26  C   0  1  Y  N  N  -10.219  -25.495   2.778  -3.662   5.154  -1.323  C26  YTM  30  
YTM  C27  C27  C   0  1  Y  N  N  -10.716  -25.682   4.071  -4.056   5.742  -0.135  C27  YTM  31  
YTM  C28  C28  C   0  1  Y  N  N  -12.353  -27.111   3.266  -3.643   3.807   1.045  C28  YTM  32  
YTM  N1   N1   N   0  1  N  N  N  -11.196  -33.022  -0.893  -5.657  -3.464  -0.009  N1   YTM  33  
YTM  N2   N2   N   0  1  N  N  N  -11.873  -32.160  -2.951  -5.857  -2.542   2.142  N2   YTM  34  
YTM  N3   N3   N   0  1  N  N  N  -12.619  -27.695   0.950  -2.821   1.811  -0.050  N3   YTM  35  
YTM  N4   N4   N   0  1  Y  N  N  -11.782  -26.481   4.294  -4.036   5.064   0.996  N4   YTM  36  
YTM  CL1  CL1  CL  0  0  N  N  N  -19.607  -29.032  -1.695   2.377  -2.224  -3.286  CL1  YTM  37  
YTM  H1   H1   H   0  1  N  N  N  -16.825  -29.403  -0.698  -0.130  -1.298  -2.310  H1   YTM  38  
YTM  H2   H2   H   0  1  N  N  N  -19.281  -26.314  -2.285   3.993  -1.082  -1.241  H2   YTM  39  
YTM  H4   H3   H   0  1  N  N  N  -19.436  -23.759  -2.064   5.047  -1.090   0.562  H4   YTM  40  
YTM  H3   H4   H   0  1  N  N  N  -18.900  -24.775  -0.684   5.218   0.394  -0.405  H3   YTM  41  
YTM  H6   H5   H   0  1  N  N  N  -17.272  -22.908  -0.063   5.837   1.655   1.638  H6   YTM  42  
YTM  H5   H6   H   0  1  N  N  N  -19.002  -22.443   0.068   5.666   0.171   2.606  H5   YTM  43  
YTM  H7   H7   H   0  1  N  N  N  -19.945  -20.814  -1.393   7.682   1.918   0.082  H7   YTM  44  
YTM  H8   H8   H   0  1  N  N  N  -19.601  -19.113  -3.171   9.991   1.281  -0.487  H8   YTM  45  
YTM  H9   H9   H   0  1  N  N  N  -17.476  -19.072  -4.417  10.939  -0.818   0.384  H9   YTM  46  
YTM  H10  H10  H   0  1  N  N  N  -15.693  -20.703  -3.939   9.581  -2.275   1.832  H10  YTM  47  
YTM  H11  H11  H   0  1  N  N  N  -16.041  -22.414  -2.183   7.274  -1.635   2.405  H11  YTM  48  
YTM  H12  H12  H   0  1  N  N  N  -15.251  -25.447  -1.174   1.068   0.857   1.196  H12  YTM  49  
YTM  H13  H13  H   0  1  N  N  N  -14.589  -29.700  -1.613  -1.708  -1.872   0.093  H13  YTM  50  
YTM  H15  H14  H   0  1  N  N  N  -12.799  -30.284  -2.941  -4.673  -0.842   2.622  H15  YTM  51  
YTM  H17  H15  H   0  1  N  N  N  -11.166  -29.204   0.895  -4.754   1.118   0.445  H17  YTM  52  
YTM  H18  H16  H   0  1  N  N  N  -10.445  -26.021   0.698  -2.927   3.350  -2.230  H18  YTM  53  
YTM  H19  H17  H   0  1  N  N  N   -9.371  -24.847   2.613  -3.682   5.718  -2.244  H19  YTM  54  
YTM  H20  H18  H   0  1  N  N  N  -10.242  -25.181   4.902  -4.385   6.771  -0.134  H20  YTM  55  
YTM  H21  H19  H   0  1  N  N  N  -13.192  -27.765   3.455  -3.641   3.285   1.990  H21  YTM  56  
YTM  H14  H20  H   0  1  N  N  N  -10.776  -33.768  -0.376  -5.927  -4.139  -0.651  H14  YTM  57  
YTM  H16  H21  H   0  1  N  N  N  -11.945  -32.256  -3.944  -6.269  -2.573   3.020  H16  YTM  58  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
YTM  C13  C14  DOUB  Y  N   1  
YTM  C13  C12  SING  Y  N   2  
YTM  C14  C15  SING  Y  N   3  
YTM  N2   C21  SING  N  N   4  
YTM  N2   C22  SING  N  N   5  
YTM  C12  C11  DOUB  Y  N   6  
YTM  O4   C22  DOUB  N  N   7  
YTM  C15  C10  DOUB  Y  N   8  
YTM  C21  C19  DOUB  N  N   9  
YTM  C22  N1   SING  N  N  10  
YTM  O2   C7   SING  N  N  11  
YTM  O2   C8   SING  N  N  12  
YTM  C11  C10  SING  Y  N  13  
YTM  C6   C7   DOUB  Y  N  14  
YTM  C6   C5   SING  Y  N  15  
YTM  C7   C16  SING  Y  N  16  
YTM  CL1  C5   SING  N  N  17  
YTM  C10  C9   SING  N  N  18  
YTM  C5   C4   DOUB  Y  N  19  
YTM  C8   C9   SING  N  N  20  
YTM  C16  C3   DOUB  Y  N  21  
YTM  C4   C3   SING  Y  N  22  
YTM  C19  C18  SING  N  N  23  
YTM  C19  C20  SING  N  N  24  
YTM  C3   C2   SING  N  N  25  
YTM  N1   C20  SING  N  N  26  
YTM  C17  C18  SING  N  N  27  
YTM  C17  C2   DOUB  N  N  28  
YTM  C18  C23  DOUB  N  N  29  
YTM  C2   C1   SING  N  N  30  
YTM  C20  O3   DOUB  N  N  31  
YTM  C23  N3   SING  N  N  32  
YTM  C1   N3   SING  N  N  33  
YTM  C1   O1   DOUB  N  N  34  
YTM  N3   C24  SING  N  N  35  
YTM  C25  C24  DOUB  Y  N  36  
YTM  C25  C26  SING  Y  N  37  
YTM  C24  C28  SING  Y  N  38  
YTM  C26  C27  DOUB  Y  N  39  
YTM  C28  N4   DOUB  Y  N  40  
YTM  C27  N4   SING  Y  N  41  
YTM  C4   H1   SING  N  N  42  
YTM  C6   H2   SING  N  N  43  
YTM  C8   H4   SING  N  N  44  
YTM  C8   H3   SING  N  N  45  
YTM  C9   H6   SING  N  N  46  
YTM  C9   H5   SING  N  N  47  
YTM  C11  H7   SING  N  N  48  
YTM  C12  H8   SING  N  N  49  
YTM  C13  H9   SING  N  N  50  
YTM  C14  H10  SING  N  N  51  
YTM  C15  H11  SING  N  N  52  
YTM  C16  H12  SING  N  N  53  
YTM  C17  H13  SING  N  N  54  
YTM  C21  H15  SING  N  N  55  
YTM  C23  H17  SING  N  N  56  
YTM  C25  H18  SING  N  N  57  
YTM  C26  H19  SING  N  N  58  
YTM  C27  H20  SING  N  N  59  
YTM  C28  H21  SING  N  N  60  
YTM  N1   H14  SING  N  N  61  
YTM  N2   H16  SING  N  N  62  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
YTM  SMILES            ACDLabs               12.01  "O=C1NC=C(C2=CN(c3cnccc3)C(=O)C(=C2)c2cc(OCCc3ccccc3)cc(Cl)c2)C(=O)N1"  
YTM  InChI             InChI                 1.03   "InChI=1S/C28H21ClN4O4/c29-21-11-19(12-23(14-21)37-10-8-18-5-2-1-3-6-18)24-13-20(25-16-31-28(36)32-26(25)34)17-33(27(24)35)22-7-4-9-30-15-22/h1-7,9,11-17H,8,10H2,(H2,31,32,34,36)"  
YTM  InChIKey          InChI                 1.03   JVSFPWJWCIUVJO-UHFFFAOYSA-N  
YTM  SMILES_CANONICAL  CACTVS                3.385  "Clc1cc(OCCc2ccccc2)cc(c1)C3=CC(=CN(C3=O)c4cccnc4)C5=CNC(=O)NC5=O"  
YTM  SMILES            CACTVS                3.385  "Clc1cc(OCCc2ccccc2)cc(c1)C3=CC(=CN(C3=O)c4cccnc4)C5=CNC(=O)NC5=O"  
YTM  SMILES_CANONICAL  "OpenEye OEToolkits"  2.0.7  "c1ccc(cc1)CCOc2cc(cc(c2)Cl)C3=CC(=CN(C3=O)c4cccnc4)C5=CNC(=O)NC5=O"  
YTM  SMILES            "OpenEye OEToolkits"  2.0.7  "c1ccc(cc1)CCOc2cc(cc(c2)Cl)C3=CC(=CN(C3=O)c4cccnc4)C5=CNC(=O)NC5=O"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
YTM  "SYSTEMATIC NAME"  ACDLabs               12.01  "5-{3-[3-chloro-5-(2-phenylethoxy)phenyl]-2-oxo-2H-[1,3'-bipyridin]-5-yl}pyrimidine-2,4(1H,3H)-dione"  
YTM  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  2.0.7  "5-[5-[3-chloranyl-5-(2-phenylethoxy)phenyl]-6-oxidanylidene-1-pyridin-3-yl-pyridin-3-yl]-1~{H}-pyrimidine-2,4-dione"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
YTM  "Create component"  2021-03-31  RCSB  
YTM  "Initial release"   2021-06-30  RCSB  
##
