data_7ON
# 
_chem_comp.id                                    7ON 
_chem_comp.name                                  "Leritrelvir bound form" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C31 H46 F3 N5 O6" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         ? 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-03-01 
_chem_comp.pdbx_modified_date                    2026-01-18 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        641.722 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     7ON 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8IGN 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  PDBC 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
7ON O1  O1  O 0 1 N N N N N N 12.717 -10.249 -8.255  -0.235 -2.572 0.032  O1  7ON 1  
7ON O4  O2  O 0 1 N N N N N N 16.908 -12.784 -9.403  1.559  -0.824 0.192  O4  7ON 2  
7ON O5  O3  O 0 1 N N N N N N 20.825 -15.625 -9.161  3.388  -0.698 -1.136 O5  7ON 3  
7ON N2  N1  N 0 1 N N N N N N 13.938 -9.129  -15.535 -4.111 1.226  -1.308 N2  7ON 4  
7ON C1  C1  C 0 1 N N S N N N 13.598 -11.298 -10.292 -1.519 -3.446 -1.826 C1  7ON 5  
7ON C3  C2  C 0 1 N N N N N N 12.194 -13.239 -10.006 -1.149 -5.722 -1.168 C3  7ON 6  
7ON C4  C3  C 0 1 N N N N N N 12.666 -11.151 -9.104  -0.674 -3.527 -0.575 C4  7ON 7  
7ON C5  C4  C 0 1 N N N N N N 13.739 -10.073 -11.175 -2.961 -3.073 -1.475 C5  7ON 8  
7ON C6  C5  C 0 1 N N S N N N 14.757 -10.331 -12.286 -3.020 -1.604 -1.054 C6  7ON 9  
7ON C21 C6  C 0 1 N N N N N N 15.882 -17.913 -8.541  3.979  3.761  -1.739 C21 7ON 10 
7ON C22 C7  C 0 1 N N N N N N 14.624 -17.094 -8.775  2.711  4.617  -1.745 C22 7ON 11 
7ON C23 C8  C 0 1 N N N N N N 14.648 -16.404 -10.131 1.482  3.706  -1.738 C23 7ON 12 
7ON C31 C9  C 0 1 N N N N N N 21.011 -15.068 -6.864  5.431  -1.472 -0.245 C31 7ON 13 
7ON C2  C10 C 0 1 N N N N N N 13.089 -12.533 -11.013 -1.455 -4.872 -2.421 C2  7ON 14 
7ON N1  N2  N 0 1 N N N N N N 11.814 -12.162 -9.105  -0.477 -4.812 -0.232 N1  7ON 15 
7ON C7  C11 C 0 1 N N R N N N 14.819 -9.185  -13.287 -4.480 -1.182 -0.878 C7  7ON 16 
7ON C8  C12 C 0 1 N N N N N N 13.655 -9.097  -14.236 -4.538 0.266  -0.464 C8  7ON 17 
7ON O2  O4  O 0 1 N N N N N N 12.555 -8.824  -13.790 -4.970 0.567  0.629  O2  7ON 18 
7ON N3  N3  N 0 1 N N N N N N 16.099 -10.522 -11.717 -2.305 -1.429 0.213  N3  7ON 19 
7ON C9  C13 C 0 1 N N N N N N 16.784 -11.650 -11.933 -1.400 -0.439 0.345  C9  7ON 20 
7ON C10 C14 C 0 1 N N S N N N 18.235 -11.654 -11.471 -0.745 -0.190 1.679  C10 7ON 21 
7ON O3  O5  O 0 1 N N N N N N 16.294 -12.640 -12.475 -1.112 0.251  -0.610 O3  7ON 22 
7ON N4  N4  N 0 1 N N N N N N 18.578 -12.949 -10.889 0.474  0.608  1.494  N4  7ON 23 
7ON C11 C15 C 0 1 N N N N N N 19.756 -13.565 -11.514 0.309  1.893  2.193  C11 7ON 24 
7ON C12 C16 C 0 1 N N R N N N 20.407 -12.395 -12.237 -0.750 1.633  3.288  C12 7ON 25 
7ON C13 C17 C 0 1 N N S N N N 19.225 -11.497 -12.628 -1.697 0.611  2.585  C13 7ON 26 
7ON C14 C18 C 0 1 N N N N N N 21.269 -11.496 -11.336 -0.097 0.795  4.409  C14 7ON 27 
7ON C15 C19 C 0 1 N N N N N N 21.026 -10.086 -11.832 -1.207 -0.163 4.884  C15 7ON 28 
7ON C16 C20 C 0 1 N N N N N N 19.869 -10.124 -12.816 -2.204 -0.293 3.721  C16 7ON 29 
7ON C17 C21 C 0 1 N N N N N N 17.835 -13.447 -9.890  1.564  0.225  0.800  C17 7ON 30 
7ON C18 C22 C 0 1 N N S N N N 18.145 -14.854 -9.385  2.789  1.102  0.779  C18 7ON 31 
7ON C19 C23 C 0 1 N N N N N N 16.859 -15.651 -9.134  2.770  1.976  -0.477 C19 7ON 32 
7ON C20 C24 C 0 1 N N N N N N 17.155 -17.112 -8.811  3.999  2.887  -0.484 C20 7ON 33 
7ON C24 C25 C 0 1 N N N N N N 15.906 -15.558 -10.324 1.501  2.832  -0.482 C24 7ON 34 
7ON N5  N5  N 0 1 N N N N N N 18.985 -14.779 -8.199  3.990  0.263  0.771  N5  7ON 35 
7ON C25 C26 C 0 1 N N N N N N 12.940 -9.458  -16.537 -4.162 2.633  -0.902 C25 7ON 36 
7ON C26 C27 C 0 1 N N N N N N 13.458 -9.326  -17.962 -2.867 3.016  -0.157 C26 7ON 37 
7ON C27 C28 C 0 1 N N N N N N 14.031 -10.687 -18.295 -1.970 3.644  -1.252 C27 7ON 38 
7ON C28 C29 C 0 1 N N N N N N 13.180 -11.678 -17.540 -2.985 4.437  -2.112 C28 7ON 39 
7ON C29 C30 C 0 1 N N N N N N 12.468 -10.908 -16.431 -4.237 3.537  -2.145 C29 7ON 40 
7ON C30 C31 C 0 1 N N N N N N 20.254 -15.177 -8.193  4.196  -0.609 -0.237 C30 7ON 41 
7ON F1  F1  F 0 1 N N N N N N 21.154 -16.250 -6.277  5.422  -2.288 -1.381 F1  7ON 42 
7ON F2  F2  F 0 1 N N N N N N 20.375 -14.286 -6.008  6.569  -0.658 -0.265 F2  7ON 43 
7ON F3  F3  F 0 1 N N N N N N 22.229 -14.557 -7.016  5.450  -2.271 0.903  F3  7ON 44 
7ON O6  O6  O 0 1 N N N N N N 16.051 -9.102  -13.957 -5.092 -1.990 0.129  O6  7ON 45 
7ON H1  H1  H 0 1 N N N N N N 14.870 -8.919  -15.832 -3.766 0.985  -2.181 H1  7ON 46 
7ON H2  H2  H 0 1 N N N N N N 14.597 -11.536 -9.898  -1.099 -2.722 -2.524 H2  7ON 47 
7ON H3  H3  H 0 1 N N N N N N 11.312 -13.675 -10.497 -2.074 -6.097 -0.731 H3  7ON 48 
7ON H4  H4  H 0 1 N N N N N N 12.744 -14.028 -9.472  -0.490 -6.552 -1.425 H4  7ON 49 
7ON H5  H5  H 0 1 N N N N N N 14.077 -9.223  -10.564 -3.599 -3.228 -2.345 H5  7ON 50 
7ON H6  H6  H 0 1 N N N N N N 12.764 -9.836  -11.625 -3.309 -3.701 -0.654 H6  7ON 51 
7ON H7  H7  H 0 1 N N N N N N 14.460 -11.245 -12.822 -2.554 -0.987 -1.822 H7  7ON 52 
7ON H8  H8  H 0 1 N N N N N N 15.865 -18.786 -9.210  3.993  3.125  -2.625 H8  7ON 53 
7ON H9  H9  H 0 1 N N N N N N 15.893 -18.253 -7.495  4.856  4.410  -1.744 H9  7ON 54 
7ON H10 H10 H 0 1 N N N N N N 14.544 -16.330 -7.987  2.698  5.252  -0.859 H10 7ON 55 
7ON H11 H11 H 0 1 N N N N N N 13.750 -17.761 -8.729  2.697  5.240  -2.639 H11 7ON 56 
7ON H12 H12 H 0 1 N N N N N N 13.766 -15.752 -10.213 0.578  4.316  -1.742 H12 7ON 57 
7ON H13 H13 H 0 1 N N N N N N 14.612 -17.170 -10.919 1.495  3.071  -2.623 H13 7ON 58 
7ON H14 H14 H 0 1 N N N N N N 12.515 -12.249 -11.907 -2.412 -5.155 -2.860 H14 7ON 59 
7ON H15 H15 H 0 1 N N N N N N 13.927 -13.182 -11.306 -0.652 -4.953 -3.153 H15 7ON 60 
7ON H16 H16 H 0 1 N N N N N N 10.988 -12.184 -8.541  0.041  -5.101 0.535  H16 7ON 61 
7ON H18 H18 H 0 1 N N N N N N 16.506 -9.798  -11.160 -2.484 -2.026 0.956  H18 7ON 62 
7ON H19 H19 H 0 1 N N N N N N 18.393 -10.848 -10.739 -0.497 -1.141 2.151  H19 7ON 63 
7ON H20 H20 H 0 1 N N N N N N 19.462 -14.354 -12.222 1.252  2.200  2.645  H20 7ON 64 
7ON H21 H21 H 0 1 N N N N N N 20.432 -13.987 -10.755 -0.042 2.657  1.499  H21 7ON 65 
7ON H22 H22 H 0 1 N N N N N N 20.967 -12.728 -13.123 -1.241 2.538  3.647  H22 7ON 66 
7ON H23 H23 H 0 1 N N N N N N 18.775 -11.844 -13.570 -2.501 1.092  2.029  H23 7ON 67 
7ON H24 H24 H 0 1 N N N N N N 20.960 -11.594 -10.285 0.748  0.230  4.017  H24 7ON 68 
7ON H25 H25 H 0 1 N N N N N N 22.332 -11.761 -11.432 0.224  1.440  5.227  H25 7ON 69 
7ON H26 H26 H 0 1 N N N N N N 21.929 -9.706  -12.333 -0.782 -1.138 5.122  H26 7ON 70 
7ON H27 H27 H 0 1 N N N N N N 20.774 -9.431  -10.985 -1.707 0.250  5.760  H27 7ON 71 
7ON H28 H28 H 0 1 N N N N N N 20.236 -10.008 -13.847 -3.193 0.034  4.042  H28 7ON 72 
7ON H29 H29 H 0 1 N N N N N N 19.146 -9.325  -12.592 -2.244 -1.328 3.381  H29 7ON 73 
7ON H30 H30 H 0 1 N N N N N N 18.706 -15.374 -10.176 2.797  1.738  1.664  H30 7ON 74 
7ON H31 H31 H 0 1 N N N N N N 16.354 -15.208 -8.263  2.783  1.341  -1.362 H31 7ON 75 
7ON H32 H32 H 0 1 N N N N N N 17.683 -17.563 -9.664  4.903  2.277  -0.480 H32 7ON 76 
7ON H33 H33 H 0 1 N N N N N N 17.796 -17.155 -7.918  3.986  3.522  0.402  H33 7ON 77 
7ON H34 H34 H 0 1 N N N N N N 16.431 -15.907 -11.225 1.488  3.468  0.403  H34 7ON 78 
7ON H35 H35 H 0 1 N N N N N N 15.608 -14.507 -10.457 0.625  2.184  -0.477 H35 7ON 79 
7ON H36 H36 H 0 1 N N N N N N 18.592 -14.414 -7.355  4.637  0.335  1.490  H36 7ON 80 
7ON H37 H37 H 0 1 N N N N N N 12.068 -8.798  -16.418 -5.027 2.806  -0.262 H37 7ON 81 
7ON H38 H38 H 0 1 N N N N N N 14.238 -8.553  -18.020 -3.078 3.743  0.627  H38 7ON 82 
7ON H39 H39 H 0 1 N N N N N N 12.638 -9.072  -18.650 -2.393 2.129  0.264  H39 7ON 83 
7ON H40 H40 H 0 1 N N N N N N 13.971 -10.875 -19.377 -1.232 4.313  -0.810 H40 7ON 84 
7ON H41 H41 H 0 1 N N N N N N 15.079 -10.753 -17.969 -1.484 2.869  -1.845 H41 7ON 85 
7ON H42 H42 H 0 1 N N N N N N 12.442 -12.133 -18.217 -3.216 5.394  -1.644 H42 7ON 86 
7ON H43 H43 H 0 1 N N N N N N 13.814 -12.465 -17.105 -2.596 4.588  -3.119 H43 7ON 87 
7ON H44 H44 H 0 1 N N N N N N 11.378 -10.964 -16.569 -4.236 2.929  -3.050 H44 7ON 88 
7ON H45 H45 H 0 1 N N N N N N 12.735 -11.324 -15.448 -5.138 4.149  -2.108 H45 7ON 89 
7ON H17 H17 H 0 1 N N N N N N 14.749 -8.276  -12.672 -5.012 -1.312 -1.821 H17 7ON 90 
7ON H46 H46 H 0 1 N N N N N N 16.759 -9.161  -13.327 -4.669 -1.925 0.996  H46 7ON 91 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
7ON C27 C26 SING N N 1  
7ON C27 C28 SING N N 2  
7ON C26 C25 SING N N 3  
7ON C28 C29 SING N N 4  
7ON C25 C29 SING N N 5  
7ON C25 N2  SING N N 6  
7ON N2  C8  SING N N 7  
7ON C8  O2  DOUB N N 8  
7ON C8  C7  SING N N 9  
7ON O6  C7  SING N N 10 
7ON C7  C6  SING N N 11 
7ON C16 C13 SING N N 12 
7ON C16 C15 SING N N 13 
7ON C13 C12 SING N N 14 
7ON C13 C10 SING N N 15 
7ON O3  C9  DOUB N N 16 
7ON C6  N3  SING N N 17 
7ON C6  C5  SING N N 18 
7ON C12 C11 SING N N 19 
7ON C12 C14 SING N N 20 
7ON C9  N3  SING N N 21 
7ON C9  C10 SING N N 22 
7ON C15 C14 SING N N 23 
7ON C11 N4  SING N N 24 
7ON C10 N4  SING N N 25 
7ON C5  C1  SING N N 26 
7ON C2  C1  SING N N 27 
7ON C2  C3  SING N N 28 
7ON N4  C17 SING N N 29 
7ON C24 C23 SING N N 30 
7ON C24 C19 SING N N 31 
7ON C1  C4  SING N N 32 
7ON C23 C22 SING N N 33 
7ON C3  N1  SING N N 34 
7ON C17 O4  DOUB N N 35 
7ON C17 C18 SING N N 36 
7ON C18 C19 SING N N 37 
7ON C18 N5  SING N N 38 
7ON O5  C30 DOUB N N 39 
7ON C19 C20 SING N N 40 
7ON N1  C4  SING N N 41 
7ON C4  O1  DOUB N N 42 
7ON C20 C21 SING N N 43 
7ON C22 C21 SING N N 44 
7ON N5  C30 SING N N 45 
7ON C30 C31 SING N N 46 
7ON F3  C31 SING N N 47 
7ON C31 F1  SING N N 48 
7ON C31 F2  SING N N 49 
7ON N2  H1  SING N N 50 
7ON C1  H2  SING N N 51 
7ON C3  H3  SING N N 52 
7ON C3  H4  SING N N 53 
7ON C5  H5  SING N N 54 
7ON C5  H6  SING N N 55 
7ON C6  H7  SING N N 56 
7ON C21 H8  SING N N 57 
7ON C21 H9  SING N N 58 
7ON C22 H10 SING N N 59 
7ON C22 H11 SING N N 60 
7ON C23 H12 SING N N 61 
7ON C23 H13 SING N N 62 
7ON C2  H14 SING N N 63 
7ON C2  H15 SING N N 64 
7ON N1  H16 SING N N 65 
7ON N3  H18 SING N N 66 
7ON C10 H19 SING N N 67 
7ON C11 H20 SING N N 68 
7ON C11 H21 SING N N 69 
7ON C12 H22 SING N N 70 
7ON C13 H23 SING N N 71 
7ON C14 H24 SING N N 72 
7ON C14 H25 SING N N 73 
7ON C15 H26 SING N N 74 
7ON C15 H27 SING N N 75 
7ON C16 H28 SING N N 76 
7ON C16 H29 SING N N 77 
7ON C18 H30 SING N N 78 
7ON C19 H31 SING N N 79 
7ON C20 H32 SING N N 80 
7ON C20 H33 SING N N 81 
7ON C24 H34 SING N N 82 
7ON C24 H35 SING N N 83 
7ON N5  H36 SING N N 84 
7ON C25 H37 SING N N 85 
7ON C26 H38 SING N N 86 
7ON C26 H39 SING N N 87 
7ON C27 H40 SING N N 88 
7ON C27 H41 SING N N 89 
7ON C28 H42 SING N N 90 
7ON C28 H43 SING N N 91 
7ON C29 H44 SING N N 92 
7ON C29 H45 SING N N 93 
7ON C7  H17 SING N N 94 
7ON O6  H46 SING N N 95 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
7ON InChI            InChI                1.06  "InChI=1S/C31H46F3N5O6/c32-31(33,34)30(45)38-23(17-7-2-1-3-8-17)29(44)39-16-19-9-6-12-21(19)24(39)27(42)37-22(15-18-13-14-35-26(18)41)25(40)28(43)36-20-10-4-5-11-20/h17-25,40H,1-16H2,(H,35,41)(H,36,43)(H,37,42)(H,38,45)/t18-,19-,21-,22-,23-,24-,25+/m0/s1" 
7ON InChIKey         InChI                1.06  FMXUVDFVVNRAMG-IFCRGVKQSA-N                                                                                                                                                                                                                                     
7ON SMILES_CANONICAL CACTVS               3.385 "O[C@H]([C@H](C[C@@H]1CCNC1=O)NC(=O)[C@@H]2[C@H]3CCC[C@H]3CN2C(=O)[C@@H](NC(=O)C(F)(F)F)C4CCCCC4)C(=O)NC5CCCC5"                                                                                                                                                 
7ON SMILES           CACTVS               3.385 "O[CH]([CH](C[CH]1CCNC1=O)NC(=O)[CH]2[CH]3CCC[CH]3CN2C(=O)[CH](NC(=O)C(F)(F)F)C4CCCCC4)C(=O)NC5CCCC5"                                                                                                                                                           
7ON SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C1CCC(CC1)[C@@H](C(=O)N2C[C@@H]3CCC[C@@H]3[C@H]2C(=O)N[C@@H](C[C@@H]4CCNC4=O)[C@H](C(=O)NC5CCCC5)O)NC(=O)C(F)(F)F"                                                                                                                                             
7ON SMILES           "OpenEye OEToolkits" 2.0.7 "C1CCC(CC1)C(C(=O)N2CC3CCCC3C2C(=O)NC(CC4CCNC4=O)C(C(=O)NC5CCCC5)O)NC(=O)C(F)(F)F"                                                                                                                                                                              
# 
_pdbx_chem_comp_identifier.comp_id           7ON 
_pdbx_chem_comp_identifier.type              "SYSTEMATIC NAME" 
_pdbx_chem_comp_identifier.program           "OpenEye OEToolkits" 
_pdbx_chem_comp_identifier.program_version   2.0.7 
_pdbx_chem_comp_identifier.identifier        "(3~{S},3~{a}~{S},6~{a}~{R})-2-[(2~{S})-2-cyclohexyl-2-[2,2,2-tris(fluoranyl)ethanoylamino]ethanoyl]-~{N}-[(2~{S},3~{R})-4-(cyclopentylamino)-3-oxidanyl-4-oxidanylidene-1-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]butan-2-yl]-3,3~{a},4,5,6,6~{a}-hexahydro-1~{H}-cyclopenta[c]pyrrole-3-carboxamide" 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            7ON 
_pdbx_chem_comp_pcm.modified_residue_id                CYS 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           "Covalent chemical modification" 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C7 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   SG 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
7ON "Create component"  2023-03-01 PDBC 
7ON "Initial release"   2023-04-05 RCSB 
7ON "Modify PCM"        2024-09-27 PDBE 
7ON "Modify descriptor" 2025-03-21 PDBC 
7ON "Modify name"       2026-01-18 PDBC 
# 
