data_38O
#

_chem_comp.id                                   38O
_chem_comp.name                                 "4-amino-5-fluoro-3-[5-(4-methylpiperazin-1-yl)-1H-benzimidazol-2-yl]quinolin-2(1H)-one"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C21 H21 F N6 O"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        Dovitinib
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2014-07-09
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       392.429
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    38O
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       4TYI
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 EBI
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
38O  C1   C1   C  0  1  N  N  N  -3.399   -5.392  5.855   8.683   1.536   0.419  C1   38O   1  
38O  C3   C2   C  0  1  N  N  N  -2.708   -7.655  5.251   7.170  -0.059  -0.597  C3   38O   2  
38O  C4   C3   C  0  1  N  N  N  -1.488   -8.437  4.743   5.827  -0.772  -0.421  C4   38O   3  
38O  C6   C4   C  0  1  N  N  N  -0.045   -7.104  6.231   4.947   1.168   0.727  C6   38O   4  
38O  C7   C5   C  0  1  N  N  N  -1.268   -6.257  6.615   6.289   1.882   0.551  C7   38O   5  
38O  C8   C6   C  0  1  Y  N  N   0.057   -9.672  6.398   3.496  -0.396  -0.294  C8   38O   6  
38O  C12  C7   C  0  1  Y  N  N   0.358  -14.149  7.461  -1.013  -0.782  -0.041  C12  38O   7  
38O  N13  N1   N  0  1  Y  N  N   1.346  -13.360  7.875  -0.322  -1.965  -0.051  N13  38O   8  
38O  C15  C8   C  0  1  Y  N  N   1.796  -10.860  7.640   2.186  -2.409  -0.170  C15  38O   9  
38O  C16  C9   C  0  1  Y  N  N   1.285   -9.699  7.103   3.413  -1.786  -0.256  C16  38O  10  
38O  C17  C10  C  0  1  N  N  N   0.271  -15.629  7.679  -2.478  -0.657   0.035  C17  38O  11  
38O  C18  C11  C  0  1  N  N  N  -0.538  -16.505  6.893  -3.084   0.596  -0.093  C18  38O  12  
38O  C21  C12  C  0  1  Y  N  N  -1.306  -18.901  6.485  -5.216   1.892  -0.131  C21  38O  13  
38O  C23  C13  C  0  1  Y  N  N  -1.258  -20.248  6.810  -6.593   1.926  -0.048  C23  38O  14  
38O  C24  C14  C  0  1  Y  N  N  -0.444  -20.696  7.846  -7.312   0.757   0.153  C24  38O  15  
38O  O29  O1   O  0  1  N  N  N   1.757  -15.527  9.418  -2.744  -2.894   0.340  O29  38O  16  
38O  N2   N2   N  0  1  N  N  N  -2.271   -6.279  5.538   7.369   0.885   0.512  N2   38O  17  
38O  N5   N3   N  0  1  N  N  N  -0.475   -8.470  5.832   4.748   0.224  -0.382  N5   38O  18  
38O  C9   C15  C  0  1  Y  N  N  -0.619  -10.894  6.264   2.349   0.374  -0.250  C9   38O  19  
38O  C10  C16  C  0  1  Y  N  N  -0.098  -12.067  6.794   1.099  -0.248  -0.169  C10  38O  20  
38O  N11  N4   N  0  1  Y  N  N  -0.552  -13.362  6.792  -0.171   0.224  -0.111  N11  38O  21  
38O  C14  C17  C  0  1  Y  N  N   1.115  -12.076  7.491   1.025  -1.651  -0.131  C14  38O  22  
38O  N19  N5   N  0  1  N  N  N  -1.326  -16.080  5.839  -2.331   1.728  -0.292  N19  38O  23  
38O  C20  C18  C  0  1  Y  N  N  -0.528  -17.960  7.204  -4.547   0.668  -0.010  C20  38O  24  
38O  F22  F1   F  0  1  N  N  N  -2.106  -18.504  5.471  -4.519   3.032  -0.328  F22  38O  25  
38O  C25  C19  C  0  1  Y  N  N   0.328  -19.800  8.567  -6.666  -0.455   0.275  C25  38O  26  
38O  C26  C20  C  0  1  Y  N  N   0.295  -18.436  8.256  -5.279  -0.516   0.194  C26  38O  27  
38O  N27  N6   N  0  1  N  N  N   1.058  -17.543  8.980  -4.619  -1.723   0.313  N27  38O  28  
38O  C28  C21  C  0  1  N  N  N   1.051  -16.222  8.720  -3.281  -1.804   0.233  C28  38O  29  
38O  H1   H1   H  0  1  N  N  N  -3.023   -4.379  6.061   8.753   2.082  -0.521  H1   38O  30  
38O  H2   H2   H  0  1  N  N  N  -4.091   -5.359  5.000   8.804   2.229   1.252  H2   38O  31  
38O  H3   H3   H  0  1  N  N  N  -3.928   -5.774  6.741   9.467   0.780   0.460  H3   38O  32  
38O  H4   H4   H  0  1  N  N  N  -3.494   -7.645  4.481   7.975  -0.794  -0.598  H4   38O  33  
38O  H5   H5   H  0  1  N  N  N  -3.098   -8.123  6.167   7.173   0.484  -1.542  H5   38O  34  
38O  H6   H6   H  0  1  N  N  N  -1.786   -9.463  4.479   5.665  -1.452  -1.258  H6   38O  35  
38O  H7   H7   H  0  1  N  N  N  -1.067   -7.938  3.857   5.835  -1.337   0.511  H7   38O  36  
38O  H8   H8   H  0  1  N  N  N   0.635   -7.174  7.093   4.944   0.625   1.672  H8   38O  37  
38O  H9   H9   H  0  1  N  N  N   0.478   -6.627  5.389   4.142   1.903   0.728  H9   38O  38  
38O  H10  H10  H  0  1  N  N  N  -0.948   -5.219  6.791   6.282   2.447  -0.381  H10  38O  39  
38O  H11  H11  H  0  1  N  N  N  -1.715   -6.663  7.534   6.452   2.561   1.388  H11  38O  40  
38O  H12  H12  H  0  1  N  N  N   2.144  -13.667  8.394  -0.704  -2.855  -0.009  H12  38O  41  
38O  H13  H13  H  0  1  N  N  N   2.730  -10.833  8.181   2.128  -3.487  -0.141  H13  38O  42  
38O  H14  H14  H  0  1  N  N  N   1.839   -8.780  7.223   4.315  -2.379  -0.295  H14  38O  43  
38O  H15  H15  H  0  1  N  N  N  -1.857  -20.955  6.255  -7.114   2.867  -0.140  H15  38O  44  
38O  H16  H16  H  0  1  N  N  N  -0.414  -21.748  8.089  -8.389   0.796   0.216  H16  38O  45  
38O  H18  H18  H  0  1  N  N  N  -1.562  -10.923  5.739   2.418   1.452  -0.279  H18  38O  46  
38O  H20  H20  H  0  1  N  N  N  -1.242  -15.089  5.738  -2.703   2.600  -0.087  H20  38O  47  
38O  H21  H21  H  0  1  N  N  N  -1.025  -16.527  4.997  -1.428   1.655  -0.639  H21  38O  48  
38O  H22  H22  H  0  1  N  N  N   0.956  -20.155  9.371  -7.237  -1.358   0.431  H22  38O  49  
38O  H23  H23  H  0  1  N  N  N   1.634  -17.888  9.721  -5.135  -2.532   0.454  H23  38O  50  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
38O  C4   C3   SING  N  N   1  
38O  C4   N5   SING  N  N   2  
38O  C3   N2   SING  N  N   3  
38O  F22  C21  SING  N  N   4  
38O  N2   C1   SING  N  N   5  
38O  N2   C7   SING  N  N   6  
38O  N5   C6   SING  N  N   7  
38O  N5   C8   SING  N  N   8  
38O  N19  C18  SING  N  N   9  
38O  C6   C7   SING  N  N  10  
38O  C9   C8   DOUB  Y  N  11  
38O  C9   C10  SING  Y  N  12  
38O  C8   C16  SING  Y  N  13  
38O  C21  C23  DOUB  Y  N  14  
38O  C21  C20  SING  Y  N  15  
38O  N11  C10  SING  Y  N  16  
38O  N11  C12  DOUB  Y  N  17  
38O  C10  C14  DOUB  Y  N  18  
38O  C23  C24  SING  Y  N  19  
38O  C18  C20  SING  N  N  20  
38O  C18  C17  DOUB  N  N  21  
38O  C16  C15  DOUB  Y  N  22  
38O  C20  C26  DOUB  Y  N  23  
38O  C12  C17  SING  N  N  24  
38O  C12  N13  SING  Y  N  25  
38O  C14  C15  SING  Y  N  26  
38O  C14  N13  SING  Y  N  27  
38O  C17  C28  SING  N  N  28  
38O  C24  C25  DOUB  Y  N  29  
38O  C26  C25  SING  Y  N  30  
38O  C26  N27  SING  N  N  31  
38O  C28  N27  SING  N  N  32  
38O  C28  O29  DOUB  N  N  33  
38O  C1   H1   SING  N  N  34  
38O  C1   H2   SING  N  N  35  
38O  C1   H3   SING  N  N  36  
38O  C3   H4   SING  N  N  37  
38O  C3   H5   SING  N  N  38  
38O  C4   H6   SING  N  N  39  
38O  C4   H7   SING  N  N  40  
38O  C6   H8   SING  N  N  41  
38O  C6   H9   SING  N  N  42  
38O  C7   H10  SING  N  N  43  
38O  C7   H11  SING  N  N  44  
38O  N13  H12  SING  N  N  45  
38O  C15  H13  SING  N  N  46  
38O  C16  H14  SING  N  N  47  
38O  C23  H15  SING  N  N  48  
38O  C24  H16  SING  N  N  49  
38O  C9   H18  SING  N  N  50  
38O  N19  H20  SING  N  N  51  
38O  N19  H21  SING  N  N  52  
38O  C25  H22  SING  N  N  53  
38O  N27  H23  SING  N  N  54  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
38O  SMILES            ACDLabs               12.01  "Fc1cccc2c1C(N)=C(C(=O)N2)c4nc5cc(N3CCN(C)CC3)ccc5n4"  
38O  InChI             InChI                 1.03   "InChI=1S/C21H21FN6O/c1-27-7-9-28(10-8-27)12-5-6-14-16(11-12)25-20(24-14)18-19(23)17-13(22)3-2-4-15(17)26-21(18)29/h2-6,11H,7-10H2,1H3,(H,24,25)(H3,23,26,29)"  
38O  InChIKey          InChI                 1.03   PIQCTGMSNWUMAF-UHFFFAOYSA-N  
38O  SMILES_CANONICAL  CACTVS                3.385  "CN1CCN(CC1)c2ccc3[nH]c(nc3c2)C4=C(N)c5c(F)cccc5NC4=O"  
38O  SMILES            CACTVS                3.385  "CN1CCN(CC1)c2ccc3[nH]c(nc3c2)C4=C(N)c5c(F)cccc5NC4=O"  
38O  SMILES_CANONICAL  "OpenEye OEToolkits"  1.9.2  "CN1CCN(CC1)c2ccc3c(c2)nc([nH]3)C4=C(c5c(cccc5F)NC4=O)N"  
38O  SMILES            "OpenEye OEToolkits"  1.9.2  "CN1CCN(CC1)c2ccc3c(c2)nc([nH]3)C4=C(c5c(cccc5F)NC4=O)N"  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
38O  "SYSTEMATIC NAME"  ACDLabs               12.01  "4-amino-5-fluoro-3-[5-(4-methylpiperazin-1-yl)-1H-benzimidazol-2-yl]quinolin-2(1H)-one"  
38O  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.9.2  "4-azanyl-5-fluoranyl-3-[5-(4-methylpiperazin-1-yl)-1H-benzimidazol-2-yl]-1H-quinolin-2-one"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
38O  "Create component"   2014-07-09  EBI   
38O  "Modify descriptor"  2014-09-05  RCSB  
38O  "Initial release"    2014-09-24  RCSB  
38O  "Modify synonyms"    2020-06-05  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     38O
_pdbx_chem_comp_synonyms.name        Dovitinib
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##
